Experiment set6IT090 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Green bean; 13 days

200 most important genes:

  gene name fitness t score description  
Psyr_4860 -4.9 -1.2 Integrase, catalytic region compare
Psyr_4581 -4.9 -2.0 anthranilate synthase, component II compare
Psyr_1984 -4.4 -2.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_4580 -4.3 -2.8 anthranilate phosphoribosyltransferase compare
Psyr_2312 -4.3 -1.0 Protein of unknown function DUF24 compare
Psyr_1009 -4.1 -1.9 Peptidylprolyl isomerase, FKBP-type compare
Psyr_0231 -4.1 -2.3 conserved hypothetical protein compare
Psyr_0214 -4.0 -2.2 conserved hypothetical protein compare
Psyr_2872 -3.9 -1.6 hypothetical protein compare
Psyr_4609 -3.8 -8.5 anthranilate synthase, component I compare
Psyr_4270 -3.7 -7.4 serine hydroxymethyltransferase compare
Psyr_4183 -3.7 -1.2 protein translocase subunit secG compare
Psyr_0827 -3.7 -4.5 pantothenate synthetase compare
Psyr_1121 -3.7 -1.7 6-phosphogluconolactonase compare
Psyr_1056 -3.6 -2.5 Poly(beta-D-mannuronate) lyase compare
Psyr_0549 -3.6 -1.9 Metallophosphoesterase compare
Psyr_1983 -3.6 -4.2 3-isopropylmalate dehydratase, large subunit compare
Psyr_1985 -3.6 -5.9 3-isopropylmalate dehydrogenase compare
Psyr_3886 -3.5 -1.6 methionyl-tRNA synthetase compare
Psyr_4369 -3.5 -3.3 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0356 -3.4 -1.1 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_0704 -3.4 -8.4 glutamate 5-kinase compare
Psyr_1663 -3.4 -2.3 phosphoribosylanthranilate isomerase compare
Psyr_4852 -3.4 -8.1 D-3-phosphoglycerate dehydrogenase compare
Psyr_0557 -3.4 -5.5 phosphoserine phosphatase compare
Psyr_1210 -3.4 -5.9 type III secretion protein HrcQa compare
Psyr_1212 -3.2 -1.7 type III secretion protein HrpO compare
Psyr_1350 -3.2 -3.0 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1613 -3.1 -5.2 septum site-determining protein MinC compare
Psyr_0469 -3.1 -10.0 dihydroxyacid dehydratase compare
Psyr_4512 -3.1 -5.1 putative phage-related protein compare
Psyr_0033 -3.1 -3.0 tryptophan synthase, alpha chain compare
Psyr_0784 -3.0 -1.6 CheW-like protein compare
Psyr_3179 -3.0 -3.6 DNA translocase FtsK compare
Psyr_3958 -3.0 -8.7 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_0848 -3.0 -9.7 ketol-acid reductoisomerase compare
Psyr_0473 -3.0 -6.8 Methionine biosynthesis MetW compare
Psyr_0219 -3.0 -10.6 phosphomannomutase compare
Psyr_1668 -3.0 -2.0 amidophosphoribosyltransferase compare
Psyr_1807 -2.9 -2.9 Allantoicase compare
Psyr_0576 -2.9 -3.2 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4897 -2.9 -3.2 imidazoleglycerol-phosphate dehydratase compare
Psyr_4262 -2.8 -0.9 lipoprotein, putative compare
Psyr_4133 -2.7 -12.7 histidinol dehydrogenase compare
Psyr_2171 -2.7 -2.1 HpcH/HpaI aldolase compare
Psyr_0426 -2.7 -1.2 lipoprotein, putative compare
Psyr_1269 -2.7 -1.9 phosphoribosylformylglycinamidine synthase compare
Psyr_1616 -2.7 -1.7 Rieske [2Fe-2S] region compare
Psyr_0846 -2.7 -9.9 acetolactate synthase, large subunit compare
Psyr_4407 -2.7 -1.7 phosphoribosylamine--glycine ligase compare
Psyr_2077 -2.7 -5.3 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0915 -2.7 -10.6 NAD-dependent epimerase/dehydratase compare
Psyr_1669 -2.6 -6.5 O-succinylhomoserine sulfhydrylase compare
Psyr_0378 -2.6 -7.6 Glycosyl transferase, family 2 compare
Psyr_0474 -2.6 -7.2 homoserine O-acetyltransferase compare
Psyr_1483 -2.6 -4.8 hypothetical protein compare
Psyr_0791 -2.5 -1.1 MOSC compare
Psyr_0826 -2.5 -3.4 glucose-6-phosphate isomerase compare
Psyr_3008 -2.5 -4.9 Undecaprenyl-diphosphatase compare
Psyr_1544 -2.5 -1.7 SirA-like protein compare
Psyr_3854 -2.5 -0.9 OmpA/MotB compare
Psyr_3174 -2.5 -4.0 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_0917 -2.5 -4.4 ABC-2 compare
Psyr_1195 -2.4 -8.7 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
Psyr_2266 -2.4 -2.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4940 -2.4 -1.8 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_1213 -2.4 -5.7 type III secretion cytoplasmic ATPase HrcN compare
Psyr_3342 -2.4 -2.0 conserved hypothetical protein compare
Psyr_0951 -2.4 -2.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1614 -2.4 -2.6 lipid A biosynthesis acyltransferase compare
Psyr_0184 -2.3 -2.4 Protein of unknown function DUF484 compare
Psyr_1008 -2.3 -1.9 conserved hypothetical protein compare
Psyr_0377 -2.3 -7.2 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0034 -2.3 -4.0 tryptophan synthase, beta chain compare
Psyr_4018 -2.3 -7.8 Formyltetrahydrofolate deformylase compare
Psyr_0918 -2.2 -6.9 ABC transporter compare
Psyr_2150 -2.2 -2.4 protein of unknown function DUF903 compare
Psyr_4683 -2.2 -2.6 dethiobiotin synthase compare
Psyr_1973 -2.2 -2.4 Aspartate transaminase compare
Psyr_2031 -2.2 -3.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3202 -2.2 -1.3 NADH dehydrogenase subunit G compare
Psyr_1198 -2.2 -1.8 type III secretion protein HrpF compare
Psyr_4588 -2.2 -3.6 Phage GP46 compare
Psyr_0847 -2.2 -6.2 acetolactate synthase, small subunit compare
Psyr_1191 -2.2 -8.6 type III transcriptional regulator HrpS compare
Psyr_0919 -2.2 -10.6 Chromosome segregation ATPase-like protein compare
Psyr_0920 -2.1 -14.7 Glycosyl transferase, group 1 compare
Psyr_0085 -2.1 -4.9 conserved hypothetical protein compare
Psyr_1200 -2.1 -10.4 outer-membrane type III secretion protein HrcC compare
Psyr_1688 -2.1 -1.6 Protein of unknown function DUF1315 compare
Psyr_2540 -2.1 -1.3 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4380 -2.1 -2.4 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_1621 -2.1 -4.3 Autoinducer synthesis protein compare
Psyr_0444 -2.1 -0.8 Malonate decarboxylase delta subunit compare
Psyr_1193 -2.1 -2.1 type III helper protein HrpZ1 compare
Psyr_3255 -2.1 -1.8 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_1196 -2.1 -2.1 type III secretion protein HrpD compare
Psyr_4130 -2.1 -7.1 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1748 -2.0 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4894 -2.0 -4.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_2929 -2.0 -3.2 transcriptional regulator, LysR family compare
Psyr_1791 -2.0 -2.6 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_1218 -2.0 -9.0 type III helper protein HrpK1 compare
Psyr_1040 -2.0 -3.3 RNA polymerase sigma factor, ECF subfamily compare
Psyr_4340 -2.0 -7.3 phosphomethylpyrimidine kinase, putative compare
Psyr_0199 -2.0 -1.3 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_2471 -2.0 -1.5 hydroxymethylglutaryl-CoA lyase compare
Psyr_3446 -2.0 -1.3 Surface presentation of antigens (SPOA) protein compare
Psyr_3674 -1.9 -2.0 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_1247 -1.9 -2.1 conserved hypothetical protein compare
Psyr_3691 -1.9 -4.9 conserved hypothetical protein compare
Psyr_4754 -1.9 -1.3 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0025 -1.9 -3.2 shikimate dehydrogenase compare
Psyr_0317 -1.9 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
Psyr_0555 -1.9 -5.3 Protein of unknown function DUF330 compare
Psyr_4136 -1.9 -1.7 BolA-like protein compare
Psyr_2294 -1.9 -2.6 conserved hypothetical protein compare
Psyr_2088 -1.9 -1.9 2-methylaconitate cis-trans isomerase compare
Psyr_0454 -1.9 -4.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4408 -1.9 -6.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3014 -1.8 -2.4 protoporphyrin IX magnesium-chelatase compare
Psyr_0386 -1.8 -3.5 phosphoribosyl-AMP cyclohydrolase compare
Psyr_1017 -1.8 -1.6 type III effector HopJ1 compare
Psyr_3844 -1.8 -2.6 conserved hypothetical protein compare
Psyr_0372 -1.8 -2.5 CDS compare
Psyr_4687 -1.8 -4.8 biotin synthase compare
Psyr_1206 -1.8 -4.6 type III secretion protein HrcT compare
Psyr_2557 -1.8 -2.0 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_3459 -1.8 -1.9 Helix-turn-helix, Fis-type compare
Psyr_2851 -1.8 -1.7 conserved hypothetical protein compare
Psyr_4686 -1.8 -5.0 8-amino-7-oxononanoate synthase compare
Psyr_1197 -1.8 -3.0 type III secretion protein HrpE compare
Psyr_4068 -1.8 -2.8 conserved hypothetical protein compare
Psyr_0493 -1.8 -1.9 CheW-like protein compare
Psyr_0531 -1.8 -1.6 LmbE-like protein compare
Psyr_4417 -1.8 -1.5 Ferredoxin--nitrite reductase compare
Psyr_0445 -1.8 -2.4 malonate decarboxylase, beta subunit compare
Psyr_2221 -1.8 -1.1 sarcosine oxidase, gamma subunit compare
Psyr_1447 -1.8 -1.7 conserved hypothetical protein compare
Psyr_4254 -1.8 -1.4 conserved hypothetical protein compare
Psyr_4856 -1.8 -3.0 conserved hypothetical protein compare
Psyr_3208 -1.8 -2.0 NADH dehydrogenase subunit M compare
Psyr_2552 -1.8 -2.5 cyclase/dehydrase compare
Psyr_4087 -1.7 -1.0 Protein of unknown function DUF520 compare
Psyr_4285 -1.7 -1.6 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_1215 -1.7 -5.7 Type III secretion protein HrcV compare
Psyr_1208 -1.7 -6.8 type III secretion protein HrcR compare
Psyr_4140 -1.7 -1.8 Protein of unknown function DUF140 compare
Psyr_3473 -1.7 -1.6 Flagellar P-ring protein compare
Psyr_1718 -1.7 -2.2 von Willebrand factor, type A compare
Psyr_5072 -1.7 -0.9 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4362 -1.7 -2.2 Rare lipoprotein A compare
Psyr_0550 -1.7 -2.6 Protein of unknown function UPF0227 compare
Psyr_0781 -1.7 -2.9 Protein-glutamate methylesterase compare
Psyr_1190 -1.7 -1.7 type III transcriptional regulator HrpR compare
Psyr_2340 -1.7 -2.8 Peptidylprolyl isomerase, FKBP-type compare
Psyr_4070 -1.7 -4.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1216 -1.7 -5.8 type III secretion outer membrane protein PopN compare
Psyr_1566 -1.7 -4.0 Nitroreductase compare
Psyr_4361 -1.7 -2.7 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_1747 -1.7 -2.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_4091 -1.7 -4.7 8-oxo-dGTPase compare
Psyr_3591 -1.6 -2.9 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1780 -1.6 -1.2 transcriptional regulator, TetR family compare
Psyr_3672 -1.6 -2.2 cobalamin-5'-phosphate synthase compare
Psyr_1720 -1.6 -2.6 Protein of unknown function DUF58 compare
Psyr_3805 -1.6 -2.3 hypothetical protein compare
Psyr_2786 -1.6 -3.1 phage-related conserved hypothetical protein compare
Psyr_3120 -1.6 -1.4 D-glucarate dehydratase compare
Psyr_2476 -1.6 -2.7 Exodeoxyribonuclease III compare
Psyr_3583 -1.6 -2.8 condensin subunit ScpB compare
Psyr_2180 -1.6 -2.0 transcriptional regulator, LysR family compare
Psyr_3782 -1.6 -2.4 CsbD-like protein compare
Psyr_2830 -1.6 -1.7 conserved hypothetical protein compare
Psyr_4920 -1.6 -1.0 conserved hypothetical bacteriophage protein compare
Psyr_0291 -1.6 -2.6 DedA compare
Psyr_0132 -1.6 -2.0 conserved hypothetical protein compare
Psyr_1257 -1.6 -4.9 2-isopropylmalate synthase compare
Psyr_3475 -1.6 -2.2 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_0822 -1.6 -1.0 1-phosphofructokinase compare
Psyr_0835 -1.6 -3.8 transcriptional regulator, TraR/DksA family compare
Psyr_4115 -1.6 -1.6 phosphoheptose isomerase compare
Psyr_2285 -1.6 -1.2 Twin-arginine translocation pathway signal compare
Psyr_1547 -1.5 -2.6 glycine cleavage system transcriptional repressor compare
Psyr_4480 -1.5 -1.1 outer membrane transport energization protein TonB compare
Psyr_1630 -1.5 -2.4 ABC transporter compare
Psyr_4658 -1.5 -1.6 CDS compare
Psyr_2056 -1.5 -3.4 CHAD compare
Psyr_3198 -1.5 -1.8 NADH dehydrogenase subunit B compare
Psyr_0436 -1.5 -1.8 Phosphopantetheine-binding protein compare
Psyr_1615 -1.5 -1.8 Patatin compare
Psyr_2095 -1.5 -2.9 Conserved TM helix compare
Psyr_3690 -1.5 -4.2 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_1596 -1.5 -1.2 Helix-turn-helix motif protein compare
Psyr_2489 -1.5 -5.0 Alpha amylase, catalytic region compare
Psyr_1124 -1.5 -2.5 conserved hypothetical protein compare
Psyr_4404 -1.5 -2.0 tRNA-U20-dihydrouridine synthase compare
Psyr_4132 -1.5 -5.0 histidinol phosphate aminotransferase apoenzyme compare
Psyr_3636 -1.5 -6.8 Polysaccharide biosynthesis protein CapD compare
Psyr_4843 -1.5 -3.1 NUDIX hydrolase compare


Specific Phenotypes

For 7 genes in this experiment