Experiment set6IT090 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -9.8 -5.7 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS05100 -6.5 -8.5 RNA polymerase-binding protein DksA compare
ABZR87_RS21795 -6.0 -4.1 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.8 -9.7 dihydroorotase compare
ABZR87_RS14535 -4.7 -4.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS08695 -4.7 -13.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS07735 -4.4 -5.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS09505 -4.4 -9.7 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS18975 -4.3 -2.0 entericidin A/B family lipoprotein compare
ABZR87_RS03440 -4.3 -7.7 type II secretion system protein GspM compare
ABZR87_RS19675 -4.3 -1.0 cold-shock protein compare
ABZR87_RS03075 -4.3 -10.8 AGE family epimerase/isomerase compare
ABZR87_RS03425 -4.3 -6.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS09500 -4.2 -4.3 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS03420 -4.1 -0.9 type II secretion system minor pseudopilin GspI compare
ABZR87_RS03450 -4.1 -16.1 type II secretion system secretin GspD compare
ABZR87_RS07355 -4.0 -6.3 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS03455 -4.0 -14.3 type II secretion system ATPase GspE compare
ABZR87_RS08750 -4.0 -6.7 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS01855 -3.9 -13.7 A24 family peptidase compare
ABZR87_RS03435 -3.9 -7.6 type II secretion system protein GspL compare
ABZR87_RS14530 -3.8 -7.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS04865 -3.7 -2.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS03430 -3.7 -13.1 type II secretion system minor pseudopilin GspK compare
ABZR87_RS02535 -3.7 -3.6 phospholipid-binding protein MlaC compare
ABZR87_RS13790 -3.7 -7.1 chorismate synthase compare
ABZR87_RS08795 -3.6 -2.5 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS11760 -3.6 -0.8 membrane protein compare
ABZR87_RS03460 -3.5 -10.7 type II secretion system inner membrane protein GspF compare
ABZR87_RS02590 -3.5 -6.8 3-dehydroquinate synthase compare
ABZR87_RS21095 -3.4 -0.8 TRAP transporter small permease compare
ABZR87_RS02640 -3.4 -13.1 diaminopimelate decarboxylase compare
ABZR87_RS09465 -3.4 -8.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14490 -3.3 -7.5 tryptophan synthase subunit alpha compare
ABZR87_RS06400 -3.3 -10.1 response regulator transcription factor compare
ABZR87_RS02550 -3.3 -5.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS00970 -3.3 -2.2 molecular chaperone DnaJ compare
ABZR87_RS03410 -3.3 -6.8 type II secretion system major pseudopilin GspG compare
ABZR87_RS02595 -3.2 -12.2 shikimate kinase compare
ABZR87_RS02565 -3.2 -5.6 glutamate synthase subunit beta compare
ABZR87_RS01615 -3.1 -0.9 RNB domain-containing ribonuclease compare
ABZR87_RS09895 -3.1 -1.2 DUF1841 family protein compare
ABZR87_RS08625 -3.0 -1.9 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS13250 -3.0 -2.3 phosphoserine phosphatase SerB compare
ABZR87_RS02440 -3.0 -7.9 twin-arginine translocase subunit TatC compare
ABZR87_RS05200 -2.9 -16.6 homoserine O-acetyltransferase compare
ABZR87_RS06350 -2.9 -9.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS14500 -2.9 -11.0 tryptophan synthase subunit beta compare
ABZR87_RS14540 -2.9 -5.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS15715 -2.9 -9.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS07380 -2.9 -14.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02445 -2.8 -4.3 Sec-independent protein translocase protein TatB compare
ABZR87_RS14965 -2.8 -2.6 DUF3619 family protein compare
ABZR87_RS02555 -2.8 -6.0 ABC transporter ATP-binding protein compare
ABZR87_RS14505 -2.8 -4.2 phosphoribosylanthranilate isomerase compare
ABZR87_RS23295 -2.7 -0.9 hypothetical protein compare
ABZR87_RS08070 -2.7 -1.6 pyruvate kinase compare
ABZR87_RS17440 -2.6 -0.8 (2Fe-2S)-binding protein compare
ABZR87_RS02570 -2.6 -17.4 glutamate synthase-related protein compare
ABZR87_RS11440 -2.6 -6.4 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS01035 -2.6 -5.4 histidine utilization repressor compare
ABZR87_RS09445 -2.6 -9.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02155 -2.6 -5.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS15505 -2.6 -0.6 DNA polymerase III subunit alpha compare
ABZR87_RS22875 -2.6 -1.8 chorismate mutase compare
ABZR87_RS02655 -2.6 -9.1 anti-sigma factor compare
ABZR87_RS00435 -2.6 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS06715 -2.5 -3.0 PTS sugar transporter subunit IIA compare
ABZR87_RS16735 -2.5 -14.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS16660 -2.5 -5.0 helix-turn-helix domain-containing protein compare
ABZR87_RS11245 -2.5 -3.4 translational GTPase TypA compare
ABZR87_RS16960 -2.5 -2.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02545 -2.5 -6.6 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS10980 -2.5 -0.8 tRNA-Leu compare
ABZR87_RS01810 -2.4 -2.5 glutamate 5-kinase compare
ABZR87_RS13175 -2.3 -1.1 tRNA-Leu compare
ABZR87_RS01675 -2.3 -2.7 carbohydrate kinase family protein compare
ABZR87_RS20690 -2.3 -1.2 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS12785 -2.3 -2.7 endopeptidase La compare
ABZR87_RS02140 -2.3 -13.1 anthranilate synthase component I compare
ABZR87_RS07665 -2.3 -9.2 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS11015 -2.3 -5.2 amino-acid N-acetyltransferase compare
ABZR87_RS04945 -2.3 -1.8 DUF4390 domain-containing protein compare
ABZR87_RS07360 -2.3 -10.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS12800 -2.2 -4.1 trigger factor compare
ABZR87_RS20880 -2.2 -6.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS00875 -2.2 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS12970 -2.2 -2.2 putative holin compare
ABZR87_RS05590 -2.2 -1.5 orotate phosphoribosyltransferase compare
ABZR87_RS22970 -2.2 -7.7 cystathionine gamma-synthase family protein compare
ABZR87_RS11940 -2.2 -2.3 SsrA-binding protein SmpB compare
ABZR87_RS22405 -2.2 -0.7 hypothetical protein compare
ABZR87_RS06840 -2.2 -5.7 COX15/CtaA family protein compare
ABZR87_RS10085 -2.1 -1.0 Rne/Rng family ribonuclease compare
ABZR87_RS16975 -2.1 -1.7 hypothetical protein compare
ABZR87_RS14080 -2.1 -2.6 phosphate signaling complex protein PhoU compare
ABZR87_RS07005 -2.1 -1.1 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS07760 -2.1 -1.9 HlyC/CorC family transporter compare
ABZR87_RS03415 -2.1 -5.8 GspH/FimT family pseudopilin compare
ABZR87_RS06845 -2.0 -7.5 heme o synthase compare
ABZR87_RS04940 -2.0 -3.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS03445 -2.0 -4.8 type II secretion system protein N compare
ABZR87_RS05570 -2.0 -8.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS02540 -2.0 -5.8 VacJ family lipoprotein compare
ABZR87_RS11625 -2.0 -8.2 malate synthase A compare
ABZR87_RS17730 -2.0 -4.3 GntR family transcriptional regulator compare
ABZR87_RS03180 -2.0 -1.3 hypothetical protein compare
ABZR87_RS01110 -2.0 -5.7 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS16540 -2.0 -2.0 MarR family transcriptional regulator compare
ABZR87_RS04975 -2.0 -2.5 peptide deformylase compare
ABZR87_RS11195 -2.0 -7.6 pseudouridine synthase compare
ABZR87_RS16820 -1.9 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07060 -1.9 -11.4 RNA polymerase factor sigma-54 compare
ABZR87_RS07710 -1.9 -5.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS02850 -1.9 -1.8 elongation factor Tu compare
ABZR87_RS22920 -1.9 -1.8 phosphogluconate dehydratase compare
ABZR87_RS08670 -1.9 -8.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS20650 -1.9 -1.1 aspartate dehydrogenase compare
ABZR87_RS02485 -1.9 -0.6 MarC family protein compare
ABZR87_RS04270 -1.9 -2.8 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS01485 -1.9 -2.2 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS13285 -1.8 -7.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS22015 -1.8 -1.5 hypothetical protein compare
ABZR87_RS20875 -1.8 -5.6 LysR family transcriptional regulator compare
ABZR87_RS02160 -1.8 -3.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS06745 -1.8 -6.3 S41 family peptidase compare
ABZR87_RS09450 -1.8 -4.7 prephenate dehydratase compare
ABZR87_RS16730 -1.8 -4.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS08040 -1.8 -7.1 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS05305 -1.8 -5.9 TetR family transcriptional regulator compare
ABZR87_RS04880 -1.7 -7.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS04785 -1.7 -8.0 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS08700 -1.7 -3.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06760 -1.7 -3.1 glutaredoxin 3 compare
ABZR87_RS17910 -1.7 -6.2 IclR family transcriptional regulator compare
ABZR87_RS05205 -1.7 -3.4 methionine biosynthesis protein MetW compare
ABZR87_RS15305 -1.7 -1.5 pyroglutamyl-peptidase I compare
ABZR87_RS17650 -1.7 -3.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08980 -1.7 -1.5 cell envelope integrity protein TolA compare
ABZR87_RS08710 -1.7 -8.9 sugar transferase compare
ABZR87_RS11265 -1.7 -1.1 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS10870 -1.7 -5.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS02385 -1.7 -3.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS08720 -1.7 -8.3 HAD family hydrolase compare
ABZR87_RS12955 -1.7 -3.9 terminase endonuclease subunit compare
ABZR87_RS15500 -1.7 -6.0 glycosyltransferase compare
ABZR87_RS15955 -1.7 -1.4 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS04160 -1.6 -2.2 LysR family transcriptional regulator compare
ABZR87_RS22000 -1.6 -1.2 hypothetical protein compare
ABZR87_RS05065 -1.6 -2.2 tyrosine recombinase XerC compare
ABZR87_RS01980 -1.6 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS02380 -1.6 -5.7 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS14415 -1.6 -0.7 hemin uptake protein HemP compare
ABZR87_RS12960 -1.6 -0.9 head completion/stabilization protein compare
ABZR87_RS01640 -1.6 -1.7 TlpA disulfide reductase family protein compare
ABZR87_RS11435 -1.6 -2.1 Mth938-like domain-containing protein compare
ABZR87_RS00205 -1.6 -2.0 DUF934 domain-containing protein compare
ABZR87_RS12070 -1.6 -1.1 porin compare
ABZR87_RS12965 -1.6 -2.1 tail protein X compare
ABZR87_RS15485 -1.6 -4.2 glycosyltransferase family 2 protein compare
ABZR87_RS04190 -1.6 -0.7 hypothetical protein compare
ABZR87_RS01645 -1.6 -3.4 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01745 -1.5 -3.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS21700 -1.5 -1.3 hypothetical protein compare
ABZR87_RS13475 -1.5 -1.8 PAS domain S-box protein compare
ABZR87_RS20680 -1.5 -1.3 SDR family oxidoreductase compare
ABZR87_RS15490 -1.5 -6.6 glycosyltransferase family 2 protein compare
ABZR87_RS18400 -1.5 -1.2 hypothetical protein compare
ABZR87_RS09650 -1.5 -5.6 molybdopterin adenylyltransferase compare
ABZR87_RS14085 -1.5 -4.4 phosphate ABC transporter ATP-binding protein PstB compare
ABZR87_RS06270 -1.5 -3.7 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS01685 -1.5 -2.8 histone H1-like DNA-binding protein compare
ABZR87_RS13645 -1.5 -0.5 hypothetical protein compare
ABZR87_RS02375 -1.5 -4.7 cytochrome c1 compare
ABZR87_RS06705 -1.5 -7.2 glutamate--cysteine ligase compare
ABZR87_RS07035 -1.5 -5.3 RNase adapter RapZ compare
ABZR87_RS13805 -1.5 -4.9 CBS domain-containing protein compare
ABZR87_RS14910 -1.5 -1.9 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS00325 -1.5 -0.9 peptidylprolyl isomerase compare
ABZR87_RS08665 -1.5 -6.2 GNAT family N-acetyltransferase compare
ABZR87_RS12330 -1.5 -1.2 hypothetical protein compare
ABZR87_RS23360 -1.5 -1.3 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS08990 -1.4 -2.4 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS11065 -1.4 -4.7 nitrogen regulation protein NR(II) compare
ABZR87_RS18695 -1.4 -4.2 sugar-binding transcriptional regulator compare
ABZR87_RS11790 -1.4 -1.4 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS15225 -1.4 -3.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS00865 -1.4 -0.6 VTT domain-containing protein compare
ABZR87_RS07730 -1.4 -1.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS01270 -1.4 -5.0 ATP-dependent DNA helicase RecG compare
ABZR87_RS07040 -1.4 -2.1 PsiF family protein compare
ABZR87_RS14125 -1.4 -2.6 YhbY family RNA-binding protein compare
ABZR87_RS20495 -1.4 -0.6 hypothetical protein compare
ABZR87_RS21375 -1.4 -1.0 DUF6566 family protein compare
ABZR87_RS06770 -1.4 -4.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS05075 -1.4 -2.3 metal-dependent hydrolase compare
ABZR87_RS11815 -1.4 -5.9 [protein-PII] uridylyltransferase compare
ABZR87_RS11140 -1.4 -0.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS06315 -1.4 -8.4 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS21110 -1.4 -1.3 GntR family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB in Ralstonia sp. UNC404CL21Col

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms