Experiment set6IT089 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 0.0025 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4071 -5.1 -3.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5679 -5.0 -3.4 hypothetical protein compare
Pf6N2E2_5237 -4.3 -2.9 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4077 -4.1 -2.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5027 -4.0 -10.8 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_2258 -4.0 -6.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5430 -3.5 -7.4 Transglycosylase, Slt family compare
Pf6N2E2_3574 -3.4 -12.1 Mannose-6-phosphate isomerase (EC 5.3.1.8) conserved
Pf6N2E2_3611 -3.4 -2.3 HflC protein compare
Pf6N2E2_1099 -3.3 -2.9 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_3948 -3.2 -8.9 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3876 -3.2 -3.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3516 -3.2 -2.6 Probable transmembrane protein compare
Pf6N2E2_4072 -3.1 -3.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4797 -3.1 -2.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_563 -3.1 -7.4 Serine transporter compare
Pf6N2E2_5714 -3.1 -2.8 Flavoprotein WrbA compare
Pf6N2E2_5527 -3.0 -2.0 Cold shock protein CspC compare
Pf6N2E2_3908 -3.0 -3.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4908 -2.9 -7.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2218 -2.9 -2.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2127 -2.9 -3.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4453 -2.9 -14.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4372 -2.8 -4.2 FIG00460773: hypothetical protein compare
Pf6N2E2_3461 -2.8 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3351 -2.7 -3.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2574 -2.7 -1.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_3665 -2.7 -1.2 serine/threonine protein kinase compare
Pf6N2E2_5902 -2.6 -2.4 hypothetical protein compare
Pf6N2E2_4369 -2.6 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1545 -2.6 -3.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2274 -2.6 -4.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4155 -2.6 -6.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4612 -2.6 -4.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3612 -2.6 -1.8 HflK protein compare
Pf6N2E2_624 -2.5 -4.7 hypothetical protein PA3071 compare
Pf6N2E2_37 -2.4 -3.3 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2181 -2.4 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_413 -2.4 -2.6 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_4447 -2.4 -12.0 Cytochrome c family protein conserved
Pf6N2E2_3537 -2.4 -3.6 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_5494 -2.4 -3.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3477 -2.3 -2.1 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3505 -2.3 -1.3 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4999 -2.3 -5.6 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2088 -2.3 -2.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_1450 -2.3 -2.0 FIG00960438: hypothetical protein compare
Pf6N2E2_3770 -2.3 -1.6 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4305 -2.3 -1.5 FIG00959590: hypothetical protein compare
Pf6N2E2_2447 -2.2 -4.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3460 -2.2 -1.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5739 -2.2 -1.4 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2823 -2.2 -4.4 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4074 -2.2 -9.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3252 -2.2 -5.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4075 -2.2 -4.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3610 -2.2 -4.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1056 -2.2 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4611 -2.1 -3.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2340 -2.1 -4.0 Transcriptional regulator, GntR family compare
Pf6N2E2_620 -2.1 -5.6 BatD compare
Pf6N2E2_3534 -2.1 -2.4 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3941 -2.1 -2.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5068 -2.1 -7.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_649 -2.1 -2.5 General secretion pathway protein L compare
Pf6N2E2_1632 -2.1 -3.6 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_2919 -2.1 -1.9 FIG00955830: hypothetical protein compare
Pf6N2E2_1626 -2.1 -5.7 Putative ATP-binding component of a transport system compare
Pf6N2E2_1499 -2.0 -1.8 ABC transporter amino acid-binding protein compare
Pf6N2E2_1987 -2.0 -1.6 hypothetical protein compare
Pf6N2E2_5671 -2.0 -2.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3258 -2.0 -2.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5869 -2.0 -2.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_5758 -2.0 -2.2 FIG00957314: hypothetical protein compare
Pf6N2E2_3257 -2.0 -1.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4391 -2.0 -4.3 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_4092 -2.0 -1.7 FIG00954395: hypothetical protein compare
Pf6N2E2_1634 -2.0 -3.6 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1606 -1.9 -4.7 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2176 -1.9 -2.2 Amidases related to nicotinamidase compare
Pf6N2E2_2010 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_5746 -1.9 -2.5 Cobalamin synthase compare
Pf6N2E2_3835 -1.9 -3.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2189 -1.9 -4.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1424 -1.9 -1.7 transcriptional regulator, TetR family compare
Pf6N2E2_2682 -1.9 -2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_760 -1.9 -8.1 Na+/H+ antiporter NhaB compare
Pf6N2E2_3271 -1.9 -2.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5711 -1.9 -5.0 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_4171 -1.8 -2.3 hypothetical protein compare
Pf6N2E2_2716 -1.8 -2.1 FIG00954793: hypothetical protein compare
Pf6N2E2_3303 -1.8 -3.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_42 -1.8 -3.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_302 -1.8 -3.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3198 -1.8 -1.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_460 -1.8 -2.4 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_4067 -1.8 -6.1 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_5342 -1.7 -2.6 21 kDa hemolysin precursor compare
Pf6N2E2_4618 -1.7 -2.9 Chemotaxis signal transduction protein compare
Pf6N2E2_1635 -1.7 -3.3 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2012 -1.7 -2.4 hypothetical protein compare
Pf6N2E2_3373 -1.7 -2.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_1352 -1.7 -2.3 Cation transport ATPase compare
Pf6N2E2_5986 -1.7 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2200 -1.7 -1.5 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_6063 -1.7 -5.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3839 -1.7 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5741 -1.7 -4.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_3199 -1.7 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5545 -1.6 -2.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_4661 -1.6 -2.6 KluA regulatory protein compare
Pf6N2E2_3698 -1.6 -2.4 Nicotinamidase family protein YcaC compare
Pf6N2E2_5742 -1.6 -4.6 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_2254 -1.6 -3.0 Cell filamentation protein fic compare
Pf6N2E2_2973 -1.6 -3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5944 -1.6 -4.2 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2674 -1.6 -1.0 FIG00953856: hypothetical protein compare
Pf6N2E2_5111 -1.6 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1625 -1.6 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4415 -1.6 -1.9 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_4825 -1.6 -3.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5793 -1.6 -4.0 Aspartyl aminopeptidase compare
Pf6N2E2_622 -1.6 -2.6 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3535 -1.6 -3.9 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_3040 -1.6 -4.4 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3607 -1.6 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4153 -1.6 -1.0 Sensory box histidine kinase compare
Pf6N2E2_5245 -1.5 -5.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5756 -1.5 -1.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5546 -1.5 -4.4 Queuosine Biosynthesis QueC ATPase conserved
Pf6N2E2_625 -1.5 -3.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_623 -1.5 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_2825 -1.5 -2.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5155 -1.5 -2.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_6064 -1.5 -3.7 2-methylaconitate isomerase compare
Pf6N2E2_5740 -1.5 -2.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_1508 -1.5 -2.1 DNA-binding response regulator compare
Pf6N2E2_634 -1.5 -6.7 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_3829 -1.5 -3.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3060 -1.5 -1.2 Outer membrane protein H precursor compare
Pf6N2E2_4476 -1.5 -3.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_5520 -1.5 -4.0 Sensory box histidine kinase compare
Pf6N2E2_2509 -1.5 -1.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5668 -1.5 -3.3 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3833 -1.5 -3.2 hypothetical protein compare
Pf6N2E2_2264 -1.5 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3847 -1.5 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_1758 -1.4 -1.5 Transcriptional regulator, MarR family compare
Pf6N2E2_6022 -1.4 -1.7 StbE replicon stabilization toxin compare
Pf6N2E2_5705 -1.4 -1.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_987 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_3039 -1.4 -3.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4187 -1.4 -3.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3328 -1.4 -1.7 transcriptional regulator compare
Pf6N2E2_3940 -1.4 -4.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_6140 -1.4 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2824 -1.4 -6.0 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3027 -1.4 -1.1 Baseplate assembly protein V compare
Pf6N2E2_5544 -1.4 -4.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3253 -1.4 -3.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3171 -1.4 -1.1 hypothetical protein compare
Pf6N2E2_2261 -1.4 -4.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_2473 -1.4 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_5001 -1.4 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_170 -1.4 -1.4 lipoprotein, putative compare
Pf6N2E2_5178 -1.4 -1.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2700 -1.3 -3.9 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_2003 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_3783 -1.3 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5727 -1.3 -4.0 FIG00955360: hypothetical protein compare
Pf6N2E2_2061 -1.3 -2.6 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_4747 -1.3 -1.4 Transmembrane sensor compare
Pf6N2E2_2896 -1.3 -2.9 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_4276 -1.3 -2.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5806 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_1534 -1.3 -1.7 Probable transmembrane protein compare
Pf6N2E2_6058 -1.3 -3.3 FIG139976: hypothetical protein compare
Pf6N2E2_3617 -1.3 -2.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2253 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_4204 -1.3 -1.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5780 -1.3 -5.2 Periplasmic protease compare
Pf6N2E2_1082 -1.3 -1.7 CopG protein compare
Pf6N2E2_62 -1.3 -2.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2708 -1.3 -2.8 Lactam utilization protein LamB compare
Pf6N2E2_1403 -1.3 -2.3 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_6038 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_5738 -1.3 -4.3 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_2281 -1.3 -1.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_6057 -1.3 -2.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2927 -1.3 -2.3 Putative signal peptide protein compare
Pf6N2E2_4043 -1.3 -3.2 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_2899 -1.2 -2.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_895 -1.2 -2.6 Transcriptional regulator, HxlR family compare
Pf6N2E2_3251 -1.2 -5.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2967 -1.2 -1.1 Cold shock protein CspA compare
Pf6N2E2_5534 -1.2 -2.7 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4113 -1.2 -1.8 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_1652 -1.2 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2060 -1.2 -5.3 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1966 -1.2 -1.3 SAM-dependent methyltransferases compare


Specific Phenotypes

For 11 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms