Experiment set6IT089 for Herbaspirillum seropedicae SmR1

Compare to:

Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS13890 +2.1 13.1 LuxR family transcriptional regulator compare
HSERO_RS13885 +2.1 9.8 histidine kinase compare
HSERO_RS14985 +2.0 9.6 transcriptional regulator compare
HSERO_RS22450 +1.9 8.3 aldose 1-epimerase compare
HSERO_RS10215 +1.5 7.5 flagellar P-ring protein FlgI compare
HSERO_RS10285 +1.4 5.7 flagellar hook-length control protein compare
HSERO_RS10145 +1.4 10.8 flagellar biosynthesis protein FlhA compare
HSERO_RS10140 +1.3 8.0 flagellar biosynthesis protein FlhB compare
HSERO_RS17105 +1.3 1.8 DNA polymerase III subunit epsilon compare
HSERO_RS10305 +1.3 11.6 flagellar motor switch protein FliG compare
HSERO_RS10200 +1.3 7.3 flagellar basal body rod protein FlgF compare
HSERO_RS10150 +1.2 10.1 flagellar biosynthesis regulator FlhF compare
HSERO_RS10175 +1.2 7.1 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS18740 +1.2 1.7 hypothetical protein compare
HSERO_RS10265 +1.2 6.6 flagellar biosynthesis protein FliO compare
HSERO_RS10290 +1.2 3.3 flagellar biosynthesis protein FliJ compare
HSERO_RS05165 +1.2 5.8 galactose-1-epimerase compare
HSERO_RS10315 +1.2 4.3 flagellar hook-basal body protein FliE compare
HSERO_RS10255 +1.2 3.1 flagellar biosynthesis protein FliQ compare
HSERO_RS10310 +1.1 6.8 flagellar M-ring protein FliF compare
HSERO_RS02815 +1.1 3.7 HxlR family transcriptional regulator compare
HSERO_RS10185 +1.1 6.2 flagellar basal body rod protein FlgC compare
HSERO_RS02800 +1.1 1.4 hypothetical protein compare
HSERO_RS10225 +1.0 5.9 flagellar hook protein FlgK compare
HSERO_RS09205 +1.0 2.6 glutathione ABC transporter permease compare
HSERO_RS09750 +1.0 4.3 8-amino-7-oxononanoate synthase compare
HSERO_RS10260 +1.0 6.2 flagellar biosynthesis protein FliP compare
HSERO_RS14975 +1.0 4.3 flagellar motor protein MotA compare
HSERO_RS03875 +1.0 1.6 hypothetical protein compare
HSERO_RS10250 +1.0 5.2 flagellar biosynthesis protein FliR compare
HSERO_RS10230 +1.0 5.3 flagellar hook-filament junction protein compare
HSERO_RS10805 +0.9 1.4 succinyldiaminopimelate aminotransferase compare
HSERO_RS10275 +0.9 5.8 flagellar motor switch protein FliM compare
HSERO_RS10295 +0.9 7.2 ATP synthase compare
HSERO_RS04525 +0.9 3.1 lysozyme compare
HSERO_RS03925 +0.9 1.8 hypothetical protein compare
HSERO_RS14970 +0.9 3.8 flagellar motor protein MotB compare
HSERO_RS05855 +0.9 5.8 flagellar motor protein MotA compare
HSERO_RS03915 +0.9 1.8 hypothetical protein compare
HSERO_RS11165 +0.9 2.9 arylesterase compare
HSERO_RS16490 +0.9 6.8 FimV compare
HSERO_RS10180 +0.9 2.1 flagellar biosynthesis protein FlgB compare
HSERO_RS10190 +0.9 2.5 flagellar basal body rod modification protein FlgD compare
HSERO_RS02790 +0.9 2.0 hypothetical protein compare
HSERO_RS10355 +0.9 4.3 flagellin compare
HSERO_RS17850 +0.9 2.5 glutamyl-Q tRNA(Asp) ligase compare
HSERO_RS10280 +0.9 2.0 flagellar basal body protein FliL compare
HSERO_RS06395 +0.8 3.0 DSBA oxidoreductase compare
HSERO_RS14025 +0.8 2.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS08530 +0.8 3.8 glycine/betaine ABC transporter permease compare
HSERO_RS19780 +0.8 4.4 chemotaxis protein CheY compare
HSERO_RS10205 +0.8 4.6 flagellar basal body rod protein FlgG compare
HSERO_RS00220 +0.8 1.1 hypothetical protein compare
HSERO_RS10160 +0.8 3.6 flagellar biosynthesis sigma factor compare
HSERO_RS02005 +0.8 2.5 membrane protein compare
HSERO_RS10970 +0.8 2.1 NfeD family protein compare
HSERO_RS10195 +0.8 5.1 flagellar hook protein FlgE compare
HSERO_RS03285 +0.7 1.0 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS18630 +0.7 1.2 hemerythrin compare
HSERO_RS19525 +0.7 1.6 PTS sugar transporter subunit IIA compare
HSERO_RS11590 +0.7 1.6 hypothetical protein compare
HSERO_RS17940 +0.7 2.2 hypothetical protein compare
HSERO_RS16305 +0.7 1.5 hypothetical protein compare
HSERO_RS09990 +0.7 1.1 glycosyl transferase compare
HSERO_RS04165 +0.7 1.0 hypothetical protein compare
HSERO_RS05315 +0.7 2.5 LacI family transcriptional regulator compare
HSERO_RS01985 +0.7 2.7 energy transducer TonB compare
HSERO_RS18550 +0.7 1.1 excinuclease ATPase subunit compare
HSERO_RS16640 +0.7 1.8 ABC transporter substrate-binding protein compare
HSERO_RS18585 +0.7 2.3 hypothetical protein compare
HSERO_RS16790 +0.7 2.4 carbonic anhydrase compare
HSERO_RS15580 +0.7 2.6 tRNA-binding protein compare
HSERO_RS02095 +0.7 1.3 Holliday junction DNA helicase RuvB compare
HSERO_RS14260 +0.6 1.5 ferredoxin compare
HSERO_RS08335 +0.6 1.8 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS04005 +0.6 2.6 type III secretion protein compare
HSERO_RS04050 +0.6 1.5 type IV Tfp pilus assembly PilP protein compare
HSERO_RS04475 +0.6 1.1 tail fiber assembly protein compare
HSERO_RS05245 +0.6 1.0 hypothetical protein compare
HSERO_RS12010 +0.6 2.1 hemerythrin compare
HSERO_RS15620 +0.6 2.1 glycosyl transferase family 1 compare
HSERO_RS03540 +0.6 1.0 dimethyladenosine transferase compare
HSERO_RS07255 +0.6 1.4 glutaminase compare
HSERO_RS09230 +0.6 2.0 2-dehydropantoate 2-reductase compare
HSERO_RS15665 +0.6 0.5 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS00895 +0.6 1.3 L-proline ABC transporter, ATPase component 1 (from data) compare
HSERO_RS08790 +0.6 0.5 hypothetical protein compare
HSERO_RS14105 +0.6 1.5 hypothetical protein compare
HSERO_RS10000 +0.6 2.6 mannose-1-phosphate guanylyltransferase compare
HSERO_RS01325 +0.6 1.7 cation/multidrug efflux protein compare
HSERO_RS05125 +0.6 1.9 DeoR family transcripitonal regulator compare
HSERO_RS19785 +0.6 2.1 sensor histidine kinase compare
HSERO_RS08465 +0.6 1.6 hypothetical protein compare
HSERO_RS04825 +0.6 1.8 XRE family transcriptional regulator compare
HSERO_RS08565 +0.6 3.1 RNA helicase compare
HSERO_RS02350 +0.6 2.7 diadenosine tetraphosphatase compare
HSERO_RS03995 +0.6 1.1 hypothetical protein compare
HSERO_RS10065 +0.6 1.5 hypothetical protein compare
HSERO_RS04665 +0.6 1.4 nitrile hydratase compare
HSERO_RS19495 +0.6 1.7 histidine triad (HIT) protein compare
HSERO_RS18260 +0.6 3.2 branched-chain amino acid ABC transporter permease compare
HSERO_RS15110 +0.6 2.2 toxin compare
HSERO_RS12950 +0.6 2.6 calcium-binding protein compare
HSERO_RS19660 +0.5 2.3 FMN-dependent NADH-azoreductase compare
HSERO_RS03700 +0.5 1.1 type VI secretion protein compare
HSERO_RS17290 +0.5 1.9 chromate transporter compare
HSERO_RS03840 +0.5 1.4 hypothetical protein compare
HSERO_RS10765 +0.5 1.4 hypothetical protein compare
HSERO_RS13560 +0.5 0.9 transcriptional regulator compare
HSERO_RS04450 +0.5 1.6 hypothetical protein compare
HSERO_RS21280 +0.5 2.1 allantoinase compare
HSERO_RS08285 +0.5 1.9 amino acid ABC transporter ATP-binding protein compare
HSERO_RS20545 +0.5 2.1 hypothetical protein compare
HSERO_RS01090 +0.5 1.2 hypothetical protein compare
HSERO_RS22145 +0.5 1.7 hypothetical protein compare
HSERO_RS20825 +0.5 1.5 ABC transporter permease compare
HSERO_RS12990 +0.5 1.6 aankyrin compare
HSERO_RS18470 +0.5 0.6 acyltransferase compare
HSERO_RS22000 +0.5 2.0 short-chain dehydrogenase compare
HSERO_RS06255 +0.5 2.1 transcriptional regulator compare
HSERO_RS09940 +0.5 1.5 peptidylprolyl isomerase compare
HSERO_RS17870 +0.5 2.9 glucokinase compare
HSERO_RS16200 +0.5 1.0 hypothetical protein compare
HSERO_RS08695 +0.5 2.4 PAS sensor protein compare
HSERO_RS20810 +0.5 2.4 amidophosphoribosyltransferase compare
HSERO_RS21265 +0.5 1.7 transcriptional regulator compare
HSERO_RS13715 +0.5 1.1 hypothetical protein compare
HSERO_RS22710 +0.5 1.6 hypothetical protein compare
HSERO_RS16380 +0.5 1.3 hypothetical protein compare
HSERO_RS11565 +0.5 2.1 cytochrome C oxidase subunit III compare
HSERO_RS08420 +0.5 1.2 hypothetical protein compare
HSERO_RS08995 +0.5 3.1 hypothetical protein compare
HSERO_RS15065 +0.5 2.0 laccase compare
HSERO_RS07530 +0.5 1.0 amino acid ABC transporter permease compare
HSERO_RS04090 +0.5 1.6 molecular chaperone Tir compare
HSERO_RS04270 +0.5 1.7 membrane protein compare
HSERO_RS20405 +0.5 1.4 GTP-binding protein YchF compare
HSERO_RS01490 +0.5 2.5 guanylate cyclase compare
HSERO_RS08425 +0.5 1.9 hypothetical protein compare
HSERO_RS06020 +0.5 2.5 response regulator compare
HSERO_RS11845 +0.5 1.1 hypothetical protein compare
HSERO_RS10080 +0.5 1.6 hypothetical protein compare
HSERO_RS23100 +0.5 2.1 hypothetical protein compare
HSERO_RS21590 +0.5 2.7 ATP-dependent DNA helicase Rep compare
HSERO_RS18220 +0.5 2.4 pilus assembly protein compare
HSERO_RS18175 +0.5 1.7 nitrate reductase compare
HSERO_RS21990 +0.5 0.9 hypothetical protein compare
HSERO_RS19005 +0.5 1.4 glutathione peroxidase compare
HSERO_RS19515 +0.5 1.0 7-cyano-7-deazaguanine reductase compare
HSERO_RS16340 +0.5 2.6 transcriptional regulator compare
HSERO_RS06700 +0.5 1.3 LuxR family transcriptional regulator compare
HSERO_RS01085 +0.5 2.1 tail protein compare
HSERO_RS10685 +0.5 1.7 serine endopeptidase compare
HSERO_RS01915 +0.5 3.2 membrane protein compare
HSERO_RS18965 +0.5 0.6 thiopurine S-methyltransferase compare
HSERO_RS14575 +0.5 2.1 hypothetical protein compare
HSERO_RS05860 +0.5 2.0 biopolymer transporter ExbD compare
HSERO_RS21585 +0.5 1.2 hypothetical protein compare
HSERO_RS23435 +0.5 0.8 MerR family transcriptional regulator compare
HSERO_RS20170 +0.5 1.7 hypothetical protein compare
HSERO_RS03845 +0.5 2.0 hypothetical protein compare
HSERO_RS21725 +0.5 1.4 polyketide cyclase compare
HSERO_RS04505 +0.4 2.2 hypothetical protein compare
HSERO_RS18255 +0.4 1.7 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS04740 +0.4 1.9 dienelactone hydrolase compare
HSERO_RS09735 +0.4 1.5 hypothetical protein compare
HSERO_RS09740 +0.4 2.0 histidine kinase compare
HSERO_RS02770 +0.4 0.9 hypothetical protein compare
HSERO_RS00200 +0.4 1.5 LysR family transcriptional regulator compare
HSERO_RS08710 +0.4 2.2 methyltransferase compare
HSERO_RS16610 +0.4 1.6 transcriptional regulator compare
HSERO_RS11055 +0.4 1.4 membrane protein compare
HSERO_RS22740 +0.4 1.3 ABC transporter permease compare
HSERO_RS00260 +0.4 1.2 hypothetical protein compare
HSERO_RS12195 +0.4 1.7 hypothetical protein compare
HSERO_RS23135 +0.4 1.6 membrane protein compare
HSERO_RS11990 +0.4 1.5 periplasmic or secreted lipoprotein compare
HSERO_RS04675 +0.4 1.5 hypothetical protein compare
HSERO_RS21140 +0.4 2.0 hydroxypyruvate isomerase compare
HSERO_RS04970 +0.4 1.8 dioxygenase compare
HSERO_RS21405 +0.4 1.1 glutathione S-transferase compare
HSERO_RS02700 +0.4 0.7 hypothetical protein compare
HSERO_RS00375 +0.4 1.0 phosphatidate cytidylyltransferase compare
HSERO_RS16800 +0.4 1.6 hypothetical protein compare
HSERO_RS01415 +0.4 1.6 5-carboxymethyl-2-hydroxymuconate isomerase compare
HSERO_RS06970 +0.4 1.0 cytochrome C553 compare
HSERO_RS03655 +0.4 1.7 ABC transporter substrate-binding protein compare
HSERO_RS10035 +0.4 1.3 hypothetical protein compare
HSERO_RS09820 +0.4 1.0 riboflavin synthase subunit beta compare
HSERO_RS00430 +0.4 1.0 glutamate--cysteine ligase compare
HSERO_RS06330 +0.4 1.5 transcriptional regulator compare
HSERO_RS15140 +0.4 2.3 chemotaxis protein CheY compare
HSERO_RS18675 +0.4 0.9 hypothetical protein compare
HSERO_RS05020 +0.4 1.5 transcriptional regulator compare
HSERO_RS07625 +0.4 0.5 tryptophanyl-tRNA synthetase compare
HSERO_RS21735 +0.4 1.1 hypothetical protein compare
HSERO_RS02780 +0.4 0.9 hypothetical protein compare
HSERO_RS21730 +0.4 2.2 short-chain dehydrogenase compare
HSERO_RS09755 +0.4 1.7 hypothetical protein compare
HSERO_RS13630 +0.4 1.6 aldo-keto reductase compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source 2-Deoxyadenosine 5-monophosphate in Herbaspirillum seropedicae SmR1

For carbon source 2-Deoxyadenosine 5-monophosphate across organisms