Experiment set6IT089 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -7.3 -3.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -6.8 -4.7 NUDIX domain-containing protein compare
ABZR87_RS05100 -6.1 -6.5 RNA polymerase-binding protein DksA compare
ABZR87_RS07355 -5.5 -6.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS02550 -5.2 -3.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS00970 -5.1 -3.1 molecular chaperone DnaJ compare
ABZR87_RS08695 -5.1 -18.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS02565 -5.0 -6.9 glutamate synthase subunit beta compare
ABZR87_RS02555 -4.5 -6.8 ABC transporter ATP-binding protein compare
ABZR87_RS02445 -4.3 -6.5 Sec-independent protein translocase protein TatB compare
ABZR87_RS02535 -4.2 -5.8 phospholipid-binding protein MlaC compare
ABZR87_RS03435 -4.2 -6.1 type II secretion system protein GspL compare
ABZR87_RS02545 -4.1 -7.4 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS08625 -4.0 -2.7 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS01855 -3.9 -13.1 A24 family peptidase compare
ABZR87_RS01675 -3.9 -2.7 carbohydrate kinase family protein compare
ABZR87_RS04865 -3.8 -6.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS04945 -3.7 -2.6 DUF4390 domain-containing protein compare
ABZR87_RS19010 -3.7 -3.2 acyloxyacyl hydrolase compare
ABZR87_RS13645 -3.7 -1.0 hypothetical protein compare
ABZR87_RS08630 -3.7 -9.2 dihydroorotase compare
ABZR87_RS04975 -3.7 -4.4 peptide deformylase compare
ABZR87_RS03430 -3.6 -14.8 type II secretion system minor pseudopilin GspK compare
ABZR87_RS10170 -3.6 -5.6 RseA family anti-sigma factor compare
ABZR87_RS01615 -3.6 -1.2 RNB domain-containing ribonuclease compare
ABZR87_RS14535 -3.5 -6.3 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS08645 -3.5 -1.0 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS01035 -3.5 -6.1 histidine utilization repressor compare
ABZR87_RS03075 -3.5 -9.8 AGE family epimerase/isomerase compare
ABZR87_RS07735 -3.4 -4.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS08750 -3.3 -6.2 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS13175 -3.3 -1.8 tRNA-Leu compare
ABZR87_RS14490 -3.2 -10.9 tryptophan synthase subunit alpha compare
ABZR87_RS02590 -3.2 -10.6 3-dehydroquinate synthase compare
ABZR87_RS13790 -3.2 -10.9 chorismate synthase compare
ABZR87_RS12785 -3.2 -4.3 endopeptidase La compare
ABZR87_RS00435 -3.1 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS04940 -3.1 -3.1 PAS domain-containing sensor histidine kinase compare
ABZR87_RS03460 -3.1 -12.3 type II secretion system inner membrane protein GspF compare
ABZR87_RS03450 -3.1 -13.7 type II secretion system secretin GspD compare
ABZR87_RS12970 -3.1 -3.0 putative holin compare
ABZR87_RS02640 -3.1 -12.2 diaminopimelate decarboxylase compare
ABZR87_RS05590 -3.1 -2.1 orotate phosphoribosyltransferase compare
ABZR87_RS06760 -3.1 -5.9 glutaredoxin 3 compare
ABZR87_RS07665 -3.1 -11.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS09465 -3.1 -7.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14530 -3.0 -10.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS02440 -3.0 -11.5 twin-arginine translocase subunit TatC compare
ABZR87_RS10085 -3.0 -1.6 Rne/Rng family ribonuclease compare
ABZR87_RS09500 -3.0 -4.4 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS10980 -3.0 -1.1 tRNA-Leu compare
ABZR87_RS03455 -3.0 -9.2 type II secretion system ATPase GspE compare
ABZR87_RS02380 -2.9 -13.9 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS02540 -2.9 -8.1 VacJ family lipoprotein compare
ABZR87_RS08795 -2.9 -4.2 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS10870 -2.8 -6.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS02595 -2.8 -9.5 shikimate kinase compare
ABZR87_RS06745 -2.8 -8.0 S41 family peptidase compare
ABZR87_RS11790 -2.8 -2.2 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS00360 -2.7 -1.6 acyl-CoA desaturase compare
ABZR87_RS07380 -2.7 -13.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS16960 -2.7 -4.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS03425 -2.7 -5.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS14500 -2.6 -11.5 tryptophan synthase subunit beta compare
ABZR87_RS02570 -2.6 -17.9 glutamate synthase-related protein compare
ABZR87_RS13705 -2.6 -1.2 integration host factor subunit alpha compare
ABZR87_RS05305 -2.6 -8.2 TetR family transcriptional regulator compare
ABZR87_RS02850 -2.6 -3.0 elongation factor Tu compare
ABZR87_RS14540 -2.6 -5.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS03440 -2.6 -5.2 type II secretion system protein GspM compare
ABZR87_RS06350 -2.5 -11.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS14505 -2.5 -3.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS02145 -2.5 -1.8 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02160 -2.5 -5.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS03410 -2.5 -6.9 type II secretion system major pseudopilin GspG compare
ABZR87_RS07035 -2.5 -7.7 RNase adapter RapZ compare
ABZR87_RS08640 -2.5 -4.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS16125 -2.4 -8.1 heme biosynthesis protein HemY compare
ABZR87_RS11940 -2.4 -3.7 SsrA-binding protein SmpB compare
ABZR87_RS09710 -2.4 -3.0 tRNA-Arg compare
ABZR87_RS00325 -2.4 -1.6 peptidylprolyl isomerase compare
ABZR87_RS00875 -2.4 -5.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS07730 -2.4 -1.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS08700 -2.4 -7.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS02140 -2.3 -12.3 anthranilate synthase component I compare
ABZR87_RS22920 -2.3 -3.1 phosphogluconate dehydratase compare
ABZR87_RS06845 -2.3 -7.4 heme o synthase compare
ABZR87_RS01555 -2.3 -0.9 barstar family protein compare
ABZR87_RS01685 -2.3 -3.8 histone H1-like DNA-binding protein compare
ABZR87_RS16735 -2.3 -15.2 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS02075 -2.3 -1.5 23S ribosomal RNA compare
ABZR87_RS13285 -2.3 -9.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS12345 -2.3 -0.9 dethiobiotin synthase compare
ABZR87_RS03415 -2.3 -8.1 GspH/FimT family pseudopilin compare
ABZR87_RS06400 -2.3 -4.6 response regulator transcription factor compare
ABZR87_RS14605 -2.2 -11.2 aconitate hydratase AcnA compare
ABZR87_RS18630 -2.2 -2.0 class II fumarate hydratase compare
ABZR87_RS07360 -2.2 -8.2 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02655 -2.2 -7.6 anti-sigma factor compare
ABZR87_RS20875 -2.2 -7.4 LysR family transcriptional regulator compare
ABZR87_RS16730 -2.2 -6.1 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS02375 -2.2 -7.6 cytochrome c1 compare
ABZR87_RS09505 -2.2 -5.0 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS02385 -2.1 -4.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS13250 -2.1 -2.7 phosphoserine phosphatase SerB compare
ABZR87_RS16660 -2.1 -4.3 helix-turn-helix domain-containing protein compare
ABZR87_RS03445 -2.0 -7.0 type II secretion system protein N compare
ABZR87_RS02155 -2.0 -5.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS09445 -2.0 -9.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS22520 -2.0 -2.5 ABATE domain-containing protein compare
ABZR87_RS08980 -2.0 -2.9 cell envelope integrity protein TolA compare
ABZR87_RS12965 -2.0 -3.1 tail protein X compare
ABZR87_RS14965 -2.0 -2.7 DUF3619 family protein compare
ABZR87_RS12790 -2.0 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00795 -2.0 -1.9 site-specific tyrosine recombinase XerD compare
ABZR87_RS05200 -2.0 -10.8 homoserine O-acetyltransferase compare
ABZR87_RS14095 -2.0 -3.5 phosphate ABC transporter permease PstC compare
ABZR87_RS10610 -2.0 -1.0 inositol monophosphatase family protein compare
ABZR87_RS20440 -1.9 -0.7 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS08040 -1.9 -6.4 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS06385 -1.9 -6.4 CHASE3 domain-containing protein compare
ABZR87_RS22970 -1.9 -6.5 cystathionine gamma-synthase family protein compare
ABZR87_RS08970 -1.9 -4.5 protein TolQ compare
ABZR87_RS07625 -1.9 -1.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS10195 -1.9 -4.0 signal peptidase I compare
ABZR87_RS08985 -1.9 -7.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS09515 -1.8 -1.1 cysteine synthase CysM compare
ABZR87_RS01810 -1.8 -2.8 glutamate 5-kinase compare
ABZR87_RS09615 -1.8 -1.5 50S ribosomal protein L19 compare
ABZR87_RS09635 -1.8 -1.2 ribosome small subunit-dependent GTPase A compare
ABZR87_RS14970 -1.8 -3.3 DUF3106 domain-containing protein compare
ABZR87_RS13300 -1.8 -5.9 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS10190 -1.8 -6.4 translation elongation factor 4 compare
ABZR87_RS16820 -1.8 -6.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14375 -1.8 -1.2 fumarate hydratase compare
ABZR87_RS18165 -1.8 -1.3 hypothetical protein compare
ABZR87_RS14510 -1.7 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS20880 -1.7 -6.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS06495 -1.7 -1.2 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS22910 -1.7 -1.7 6-phosphogluconolactonase compare
ABZR87_RS20785 -1.7 -0.8 DUF2783 domain-containing protein compare
ABZR87_RS22645 -1.7 -1.6 hypothetical protein compare
ABZR87_RS03420 -1.7 -0.9 type II secretion system minor pseudopilin GspI compare
ABZR87_RS11625 -1.7 -6.8 malate synthase A compare
ABZR87_RS14360 -1.7 -6.1 acetate--CoA ligase compare
ABZR87_RS08670 -1.7 -8.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS10400 -1.7 -1.1 hypothetical protein compare
ABZR87_RS10565 -1.7 -2.0 cupin domain-containing protein compare
ABZR87_RS19050 -1.6 -2.9 glycosyltransferase family 39 protein compare
ABZR87_RS05350 -1.6 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS15485 -1.6 -4.2 glycosyltransferase family 2 protein compare
ABZR87_RS01225 -1.6 -2.3 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS11815 -1.6 -7.6 [protein-PII] uridylyltransferase compare
ABZR87_RS10350 -1.6 -1.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS10275 -1.6 -1.3 DUF5818 domain-containing protein compare
ABZR87_RS13145 -1.6 -3.1 hypothetical protein compare
ABZR87_RS01085 -1.6 -3.3 rhombosortase compare
ABZR87_RS15990 -1.6 -5.8 aldehyde dehydrogenase family protein compare
ABZR87_RS01275 -1.6 -2.0 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS13415 -1.6 -4.7 IclR family transcriptional regulator compare
ABZR87_RS11435 -1.6 -2.3 Mth938-like domain-containing protein compare
ABZR87_RS11265 -1.6 -1.2 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS09625 -1.5 -8.2 CobD/CbiB family protein compare
ABZR87_RS17730 -1.5 -3.0 GntR family transcriptional regulator compare
ABZR87_RS11470 -1.5 -4.0 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS16185 -1.5 -0.9 dCTP deaminase compare
ABZR87_RS07290 -1.5 -2.1 DUF6691 family protein compare
ABZR87_RS06840 -1.5 -4.8 COX15/CtaA family protein compare
ABZR87_RS17310 -1.5 -4.2 PadR family transcriptional regulator compare
ABZR87_RS05645 -1.5 -1.8 SDR family oxidoreductase compare
ABZR87_RS11420 -1.5 -1.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS20140 -1.5 -1.4 PAAR domain-containing protein compare
ABZR87_RS07705 -1.5 -1.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS10525 -1.5 -1.1 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS10175 -1.4 -3.8 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01450 -1.4 -1.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS03565 -1.4 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13475 -1.4 -4.1 PAS domain S-box protein compare
ABZR87_RS00085 -1.4 -2.0 ABC transporter ATP-binding protein compare
ABZR87_RS16845 -1.4 -0.8 hypothetical protein compare
ABZR87_RS20555 -1.4 -1.8 helix-turn-helix transcriptional regulator compare
ABZR87_RS17650 -1.4 -2.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16130 -1.4 -2.7 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS06705 -1.4 -7.4 glutamate--cysteine ligase compare
ABZR87_RS11015 -1.4 -3.5 amino-acid N-acetyltransferase compare
ABZR87_RS16170 -1.4 -1.0 argininosuccinate lyase compare
ABZR87_RS23265 -1.4 -2.2 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS01980 -1.4 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS17235 -1.4 -2.9 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS09450 -1.4 -3.6 prephenate dehydratase compare
ABZR87_RS01420 -1.4 -1.8 outer membrane protein assembly factor BamE compare
ABZR87_RS10620 -1.4 -2.8 serine O-acetyltransferase compare
ABZR87_RS07510 -1.4 -2.1 LysR family transcriptional regulator compare
ABZR87_RS04880 -1.4 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS08875 -1.4 -2.6 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS05145 -1.4 -0.9 copper chaperone PCu(A)C compare
ABZR87_RS11195 -1.3 -5.3 pseudouridine synthase compare
ABZR87_RS21095 -1.3 -0.6 TRAP transporter small permease compare
ABZR87_RS12945 -1.3 -3.5 GPO family capsid scaffolding protein compare
ABZR87_RS11010 -1.3 -1.9 oxidative damage protection protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB in Ralstonia sp. UNC404CL21Col

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms