Experiment set6IT088 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Magnesium chloride hexahydrate 0.125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3060 -5.7 -3.9 Outer membrane protein H precursor compare
Pf6N2E2_58 -4.6 -3.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4974 -4.6 -7.1 DedA protein compare
Pf6N2E2_5544 -4.2 -6.9 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_773 -4.1 -6.8 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_5006 -4.1 -7.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3834 -3.9 -6.5 Lipoprotein NlpD compare
Pf6N2E2_4362 -3.6 -3.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4611 -3.4 -2.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2756 -3.4 -6.6 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_6140 -3.4 -1.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3617 -3.4 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4585 -3.3 -11.4 Cell division protein FtsX compare
Pf6N2E2_3062 -3.1 -4.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_74 -3.1 -3.2 DedD protein compare
Pf6N2E2_4743 -3.1 -1.5 hypothetical protein compare
Pf6N2E2_6081 -3.1 -4.1 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_4077 -3.0 -2.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2574 -3.0 -2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_3833 -2.8 -5.7 hypothetical protein compare
Pf6N2E2_1087 -2.8 -8.4 Iron siderophore sensor protein compare
Pf6N2E2_4044 -2.8 -3.1 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_3665 -2.8 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3753 -2.8 -13.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_3761 -2.8 -15.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_4187 -2.8 -3.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5255 -2.7 -9.3 Outer membrane stress sensor protease DegS compare
Pf6N2E2_4068 -2.7 -10.5 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_4993 -2.7 -3.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_1606 -2.7 -5.6 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_5342 -2.7 -3.1 21 kDa hemolysin precursor compare
Pf6N2E2_3132 -2.7 -3.6 FIG00954548: hypothetical protein compare
Pf6N2E2_5171 -2.6 -13.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5771 -2.5 -7.5 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_3285 -2.5 -3.7 Rod shape-determining protein MreD compare
Pf6N2E2_5705 -2.5 -2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3642 -2.5 -5.2 lipoprotein, putative compare
Pf6N2E2_3344 -2.4 -3.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_3460 -2.4 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5001 -2.4 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4273 -2.4 -7.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2217 -2.4 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5178 -2.4 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2853 -2.3 -9.2 Iron-regulated protein A precursor compare
Pf6N2E2_180 -2.3 -3.7 Transcriptional regulator, MerR family compare
Pf6N2E2_3661 -2.3 -3.1 hypothetical protein compare
Pf6N2E2_4477 -2.3 -3.1 Z-ring-associated protein ZapA compare
Pf6N2E2_5245 -2.3 -6.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5956 -2.2 -6.2 FIG004453: protein YceG like compare
Pf6N2E2_2934 -2.2 -2.6 lipoprotein, putative compare
Pf6N2E2_5328 -2.2 -3.0 FIG00958649: hypothetical protein compare
Pf6N2E2_2825 -2.2 -3.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5794 -2.2 -2.2 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2753 -2.2 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_4584 -2.2 -2.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_1633 -2.2 -3.9 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_4803 -2.1 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4162 -2.1 -2.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3270 -2.1 -3.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_855 -2.1 -3.3 Transcriptional regulator, IclR family compare
Pf6N2E2_5510 -2.1 -2.5 FIG00955324: hypothetical protein compare
Pf6N2E2_405 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_5671 -2.0 -3.0 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4046 -2.0 -11.7 FIG00953482: hypothetical protein compare
Pf6N2E2_4969 -2.0 -1.4 hypothetical protein compare
Pf6N2E2_2507 -2.0 -4.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_6100 -2.0 -2.2 tRNA-Val-TAC compare
Pf6N2E2_5527 -2.0 -2.2 Cold shock protein CspC compare
Pf6N2E2_5618 -1.9 -7.3 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf6N2E2_2823 -1.9 -4.4 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5346 -1.9 -2.9 rRNA small subunit methyltransferase I compare
Pf6N2E2_3243 -1.9 -10.8 FIG067310: hypothetical protein compare
Pf6N2E2_2281 -1.9 -2.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2200 -1.9 -1.8 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_4071 -1.9 -3.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2824 -1.9 -7.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4159 -1.9 -3.4 Cytochrome c4 compare
Pf6N2E2_3658 -1.9 -5.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5014 -1.8 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_724 -1.8 -2.1 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_4908 -1.8 -4.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3477 -1.8 -2.0 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_4614 -1.8 -3.5 twitching motility protein PilH compare
Pf6N2E2_2413 -1.8 -1.8 FIG074102: hypothetical protein compare
Pf6N2E2_5780 -1.8 -6.6 Periplasmic protease compare
Pf6N2E2_2021 -1.8 -6.7 Excinuclease ABC subunit C compare
Pf6N2E2_4659 -1.7 -3.4 Lipoprotein, putative compare
Pf6N2E2_4272 -1.7 -2.8 putative membrane protein compare
Pf6N2E2_2176 -1.7 -2.2 Amidases related to nicotinamidase compare
Pf6N2E2_1635 -1.7 -3.8 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_3611 -1.7 -1.6 HflC protein compare
Pf6N2E2_1545 -1.7 -3.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1336 -1.7 -2.4 AraC family transcription regulator compare
Pf6N2E2_1605 -1.7 -6.0 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_1625 -1.6 -2.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5242 -1.6 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1932 -1.6 -4.2 Transcriptional regulator, IclR family compare
Pf6N2E2_75 -1.6 -2.6 Colicin V production protein compare
Pf6N2E2_2707 -1.6 -2.6 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2940 -1.6 -3.8 OmpA family protein compare
Pf6N2E2_4499 -1.6 -2.0 protein of unknown function DUF86 compare
Pf6N2E2_4416 -1.6 -2.1 Tyrosine recombinase XerC compare
Pf6N2E2_4045 -1.6 -1.9 FIG00953248: hypothetical protein compare
Pf6N2E2_77 -1.5 -3.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2708 -1.5 -3.2 Lactam utilization protein LamB compare
Pf6N2E2_4478 -1.5 -4.4 FIG019278: hypothetical protein compare
Pf6N2E2_1636 -1.5 -5.8 Ferrichrome-iron receptor compare
Pf6N2E2_2519 -1.5 -1.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_1634 -1.5 -3.9 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_5219 -1.5 -5.3 FIG140336: TPR domain protein compare
Pf6N2E2_5156 -1.5 -1.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_6062 -1.5 -5.2 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_5453 -1.5 -2.7 hypothetical protein compare
Pf6N2E2_5250 -1.5 -2.9 Restriction endonuclease compare
Pf6N2E2_5821 -1.5 -5.8 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf6N2E2_5609 -1.4 -4.4 DNA-binding response regulator ColR compare
Pf6N2E2_5172 -1.4 -2.8 FOG: TPR repeat compare
Pf6N2E2_1632 -1.4 -3.6 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_638 -1.4 -2.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_6064 -1.4 -4.1 2-methylaconitate isomerase compare
Pf6N2E2_78 -1.4 -3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4838 -1.4 -5.8 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_3373 -1.4 -1.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3713 -1.3 -1.7 Acyl carrier protein compare
Pf6N2E2_2465 -1.3 -5.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4372 -1.3 -3.6 FIG00460773: hypothetical protein compare
Pf6N2E2_2605 -1.3 -3.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2693 -1.3 -1.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2189 -1.3 -3.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2526 -1.3 -3.9 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_5646 -1.3 -1.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_423 -1.3 -1.2 Putative phosphatase YfbT compare
Pf6N2E2_2510 -1.3 -3.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4305 -1.3 -1.0 FIG00959590: hypothetical protein compare
Pf6N2E2_906 -1.3 -1.9 ISPpu14, transposase Orf2 compare
Pf6N2E2_241 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_4059 -1.3 -1.1 DNA-binding protein HU-alpha compare
Pf6N2E2_5327 -1.2 -3.8 Outer membrane protein assembly factor YaeT precursor compare
Pf6N2E2_6099 -1.2 -1.0 tRNA-Glu-TTC compare
Pf6N2E2_3587 -1.2 -3.3 Azurin compare
Pf6N2E2_1804 -1.2 -3.5 Immune-responsive protein 1 compare
Pf6N2E2_1682 -1.2 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_4715 -1.2 -3.1 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_4809 -1.2 -7.8 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2971 -1.2 -8.1 AmpG permease compare
Pf6N2E2_2513 -1.2 -2.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3332 -1.2 -2.6 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf6N2E2_2274 -1.2 -3.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1287 -1.2 -2.3 Mobile element protein compare
Pf6N2E2_5338 -1.2 -4.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2588 -1.2 -2.3 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2706 -1.2 -2.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4054 -1.2 -1.6 Osmotically inducible protein C compare
Pf6N2E2_4352 -1.2 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1611 -1.2 -3.3 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_5979 -1.2 -4.1 D-galactonate regulator, IclR family compare
Pf6N2E2_2375 -1.2 -2.2 Response regulator NasT compare
Pf6N2E2_4673 -1.1 -2.3 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_4810 -1.1 -3.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_70 -1.1 -2.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5252 -1.1 -1.0 FIG00956396: hypothetical protein compare
Pf6N2E2_464 -1.1 -2.1 Sensory histidine kinase QseC compare
Pf6N2E2_3461 -1.1 -1.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_160 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_3351 -1.1 -2.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4996 -1.1 -2.2 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_5936 -1.1 -1.8 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_939 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_3326 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_6063 -1.1 -4.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4467 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_4369 -1.1 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2310 -1.1 -5.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3040 -1.1 -3.7 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2761 -1.1 -3.5 hypothetical protein compare
Pf6N2E2_3656 -1.1 -3.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_2503 -1.1 -1.3 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5902 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2674 -1.1 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_5128 -1.1 -1.7 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_1493 -1.1 -3.1 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_4601 -1.1 -1.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3982 -1.0 -1.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_619 -1.0 -1.7 Exonuclease SbcD compare
Pf6N2E2_5226 -1.0 -1.3 FIG00955589: hypothetical protein compare
Pf6N2E2_5345 -1.0 -4.0 LppC putative lipoprotein compare
Pf6N2E2_2752 -1.0 -4.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3024 -1.0 -0.6 Phage tail fibers compare
Pf6N2E2_4579 -1.0 -1.0 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2561 -1.0 -1.6 FIG00955434: hypothetical protein compare
Pf6N2E2_1273 -1.0 -2.7 Probable RND efflux membrane fusion protein compare
Pf6N2E2_1656 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_2003 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3160 -1.0 -3.9 Multicopper oxidase compare
Pf6N2E2_3973 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_2253 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_4570 -1.0 -1.1 Cation/multidrug efflux pump compare
Pf6N2E2_2586 -1.0 -1.3 Hpt domain protein compare
Pf6N2E2_3835 -1.0 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5761 -1.0 -1.1 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 12 genes in this experiment

For stress Magnesium chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Magnesium chloride hexahydrate across organisms