Experiment set6IT088 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_13110 -4.4 -7.3 putative transporter, required for glycine utilization (from data) conserved
AO353_12090 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20625 -4.3 -4.2 3-isopropylmalate dehydratase compare
AO353_12520 -4.3 -10.3 glutamate synthase compare
AO353_07220 -4.1 -7.3 anthranilate synthase compare
AO353_20695 -4.1 -7.3 O-succinylhomoserine sulfhydrylase compare
AO353_07210 -3.9 -6.0 indole-3-glycerol-phosphate synthase compare
AO353_08185 -3.8 -10.5 methionine biosynthesis protein MetW compare
AO353_07230 -3.8 -15.2 anthranilate synthase compare
AO353_05115 -3.8 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_05110 -3.7 -10.8 histidinol dehydrogenase compare
AO353_08345 -3.7 -8.9 dihydroxy-acid dehydratase compare
AO353_08685 -3.6 -7.7 N-acetylglutamate synthase compare
AO353_12085 -3.6 -8.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_13165 -3.6 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14505 -3.6 -11.8 ketol-acid reductoisomerase compare
AO353_20665 -3.6 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12515 -3.5 -20.9 glutamate synthase compare
AO353_08475 -3.5 -9.4 phosphoserine phosphatase compare
AO353_20635 -3.5 -13.2 3-isopropylmalate dehydrogenase compare
AO353_08180 -3.5 -13.4 homoserine O-acetyltransferase compare
AO353_12070 -3.4 -9.3 imidazoleglycerol-phosphate dehydratase compare
AO353_09240 -3.4 -2.4 acetylglutamate kinase compare
AO353_02070 -3.4 -8.9 prephenate dehydratase compare
AO353_12075 -3.4 -9.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_02040 -3.3 -3.9 integration host factor subunit beta compare
AO353_07215 -3.3 -8.7 anthranilate phosphoribosyltransferase compare
AO353_20620 -3.2 -7.7 isopropylmalate isomerase compare
AO353_00310 -3.2 -10.2 transaldolase compare
AO353_12360 -3.1 -9.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_03500 -3.1 -13.3 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
AO353_12150 -3.1 -7.9 histidine kinase compare
AO353_03510 -3.1 -4.3 glycine cleavage system protein T compare
AO353_07155 -3.0 -6.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12365 -3.0 -4.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_24340 -3.0 -3.4 TetR family transcriptional regulator compare
AO353_10710 -3.0 -5.3 tryptophan synthase subunit beta compare
AO353_14500 -2.9 -7.2 acetolactate synthase 3 regulatory subunit compare
AO353_14495 -2.9 -10.8 acetolactate synthase 3 catalytic subunit compare
AO353_16450 -2.9 -13.5 protein-PII uridylyltransferase compare
AO353_12500 -2.8 -1.9 shikimate kinase compare
AO353_15925 -2.8 -12.9 2-isopropylmalate synthase compare
AO353_08165 -2.8 -3.3 pyrroline-5-carboxylate reductase compare
AO353_12145 -2.8 -5.5 nitrogen regulation protein NR(I) compare
AO353_04155 -2.7 -12.1 ornithine carbamoyltransferase compare
AO353_03360 -2.7 -9.2 glucose-6-phosphate dehydrogenase compare
AO353_08780 -2.7 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_03490 -2.6 -8.8 Fis family transcriptional regulator conserved
AO353_10025 -2.6 -15.1 pyruvate carboxylase subunit B compare
AO353_09000 -2.5 -6.5 argininosuccinate lyase compare
AO353_14115 -2.5 -7.4 gamma-glutamyl kinase compare
AO353_03495 -2.5 -5.8 glycine cleavage system protein H conserved
AO353_24130 -2.5 -4.4 hypothetical protein compare
AO353_09140 -2.5 -10.2 XRE family transcriptional regulator compare
AO353_02710 -2.5 -11.3 (p)ppGpp synthetase compare
AO353_10670 -2.5 -7.5 shikimate dehydrogenase compare
AO353_04105 -2.4 -9.3 argininosuccinate synthase compare
AO353_20540 -2.4 -8.3 aromatic amino acid aminotransferase compare
AO353_08015 -2.4 -8.1 5,10-methylenetetrahydrofolate reductase compare
AO353_01375 -2.3 -7.0 phosphate acyltransferase compare
AO353_06495 -2.3 -5.8 gamma-glutamyl phosphate reductase compare
AO353_12115 -2.3 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13100 -2.3 -2.7 GTPase RsgA compare
AO353_10035 -2.3 -7.6 LysR family transcriptional regulator compare
AO353_10030 -2.3 -10.9 pyruvate carboxylase subunit A compare
AO353_14420 -2.3 -3.7 molecular chaperone DnaK compare
AO353_09915 -2.2 -7.0 long-chain acyl-CoA thioester hydrolase compare
AO353_10705 -2.2 -4.8 tryptophan synthase subunit alpha compare
AO353_22800 -2.2 -3.8 sulfite reductase compare
AO353_02685 -2.2 -3.5 phosphoribosylglycinamide formyltransferase compare
AO353_06155 -2.2 -8.9 copper-transporting ATPase compare
AO353_14775 -2.2 -7.0 hypothetical protein compare
AO353_19360 -2.1 -3.4 peroxiredoxin compare
AO353_19060 -2.1 -6.1 CysB family transcriptional regulator compare
AO353_20175 -2.1 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_04355 -2.1 -3.1 homoserine dehydrogenase compare
AO353_03580 -2.1 -4.1 ATP-dependent DNA helicase RuvB compare
AO353_00620 -2.1 -3.0 cytochrome C oxidase Cbb3 compare
AO353_07525 -2.0 -12.0 biotin synthase compare
AO353_03420 -2.0 -5.4 phosphogluconate dehydratase compare
AO353_00825 -2.0 -4.9 porin compare
AO353_09250 -2.0 -3.7 exodeoxyribonuclease III compare
AO353_03615 -1.9 -3.6 cold-shock protein compare
AO353_13590 -1.9 -6.2 cobalt-precorrin-6X reductase compare
AO353_07355 -1.9 -6.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09070 -1.9 -10.5 ammonia channel protein compare
AO353_03415 -1.9 -6.2 glucokinase compare
AO353_03590 -1.9 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_21625 -1.8 -2.7 Fe/S biogenesis protein NfuA compare
AO353_15250 -1.8 -3.6 cytochrome B compare
AO353_21630 -1.7 -3.2 precorrin-4 C11-methyltransferase compare
AO353_12105 -1.7 -6.3 peptidase S41 compare
AO353_02600 -1.7 -2.0 alpha-ribazole phosphatase compare
AO353_03250 -1.7 -1.8 gluconokinase compare
AO353_14400 -1.7 -3.8 Fis family transcriptional regulator compare
AO353_02625 -1.7 -8.9 cobalamin biosynthesis protein CobD compare
AO353_21660 -1.7 -10.2 cobalamin biosynthesis protein CobN compare
AO353_13615 -1.6 -11.1 precorrin-2 C20-methyltransferase compare
AO353_03020 -1.6 -6.5 arginine N-succinyltransferase compare
AO353_06050 -1.6 -6.6 exodeoxyribonuclease V subunit gamma compare
AO353_13605 -1.6 -8.3 oxidoreductase compare
AO353_14370 -1.6 -5.4 glucose-6-phosphate isomerase compare
AO353_06045 -1.6 -6.6 exodeoxyribonuclease V subunit beta compare
AO353_00495 -1.6 -2.6 DNA topoisomerase I compare
AO353_10455 -1.6 -2.1 tRNA modification GTPase MnmE compare
AO353_09285 -1.5 -8.6 reactive intermediate/imine deaminase compare
AO353_02635 -1.5 -7.6 cobyrinic acid a,c-diamide synthase compare
AO353_14990 -1.5 -2.6 hypothetical protein compare
AO353_09030 -1.5 -0.9 iron donor protein CyaY compare
AO353_02610 -1.5 -5.8 adenosylcobinamide kinase compare
AO353_12710 -1.5 -2.0 thioredoxin compare
AO353_16940 -1.5 -5.0 deoxycytidine triphosphate deaminase compare
AO353_02605 -1.5 -6.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_27435 -1.4 -2.0 hypothetical protein compare
AO353_26045 -1.4 -2.7 hypothetical protein compare
AO353_18715 -1.4 -2.1 histidine kinase compare
AO353_08465 -1.4 -9.9 phosphoenolpyruvate-protein phosphotransferase compare
AO353_02640 -1.4 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_13140 -1.4 -4.8 tRNA dimethylallyltransferase compare
AO353_17030 -1.4 -8.3 serine hydrolase conserved
AO353_21655 -1.4 -3.7 cobalamin biosynthesis protein CobW compare
AO353_06160 -1.4 -4.9 transcriptional regulator compare
AO353_28495 -1.3 -3.3 hypothetical protein compare
AO353_08885 -1.3 -9.1 polyphosphate kinase compare
AO353_06320 -1.3 -3.9 AsnC family transcriptional regulator compare
AO353_13620 -1.3 -7.0 precorrin-3B C17-methyltransferase compare
AO353_07515 -1.3 -2.2 transporter compare
AO353_08045 -1.3 -8.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_04220 -1.3 -4.5 chemotaxis protein CheY compare
AO353_02720 -1.3 -4.6 cysteine synthase compare
AO353_02615 -1.3 -5.6 cobyric acid synthase compare
AO353_03245 -1.2 -5.5 permease DsdX compare
AO353_02250 -1.2 -3.1 chorismate synthase compare
AO353_14395 -1.2 -3.1 poly(A) polymerase compare
AO353_13225 -1.2 -2.6 50S ribosomal protein L9 compare
AO353_07325 -1.2 -2.0 diadenosine tetraphosphatase compare
AO353_22150 -1.2 -2.5 iron transporter compare
AO353_06415 -1.2 -3.7 hypothetical protein compare
AO353_13200 -1.2 -7.4 exoribonuclease R compare
AO353_02595 -1.2 -2.8 cobalamin synthase compare
AO353_07940 -1.2 -3.1 hypothetical protein compare
AO353_22810 -1.2 -1.5 hypothetical protein compare
AO353_14220 -1.2 -1.7 ribosomal large subunit pseudouridine synthase D compare
AO353_05625 -1.2 -1.6 transcription elongation factor GreA compare
AO353_21665 -1.2 -3.1 magnesium chelatase compare
AO353_22920 -1.2 -4.0 GntR family transcriptional regulator compare
AO353_04650 -1.1 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
AO353_05075 -1.1 -7.0 adenylylsulfate kinase compare
AO353_07520 -1.1 -7.7 8-amino-7-oxononanoate synthase compare
AO353_13600 -1.1 -2.7 precorrin-6Y C5,15-methyltransferase compare
AO353_05080 -1.1 -6.8 sulfate adenylyltransferase compare
AO353_07315 -1.1 -2.2 rRNA methyltransferase compare
AO353_05135 -1.1 -6.0 toluene tolerance protein compare
AO353_10445 -1.1 -1.8 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_21615 -1.1 -6.6 methionine synthase compare
AO353_05125 -1.1 -3.1 BolA family transcriptional regulator compare
AO353_09720 -1.1 -1.6 hypothetical protein compare
AO353_05690 -1.1 -2.6 SsrA-binding protein compare
AO353_00490 -1.1 -2.1 PasA protein compare
AO353_02195 -1.1 -3.7 spermidine synthase compare
AO353_08980 -1.1 -2.3 heme biosynthesis operon protein HemX compare
AO353_05420 -1.1 -1.7 peptide chain release factor 3 compare
AO353_20565 -1.0 -1.6 tRNA-Ala compare
AO353_11165 -1.0 -6.1 hypothetical protein compare
AO353_05105 -1.0 -5.5 histidinol-phosphate aminotransferase compare
AO353_14595 -1.0 -4.8 carbonate dehydratase compare
AO353_13610 -1.0 -2.7 precorrin isomerase compare
AO353_15830 -1.0 -2.3 transcriptional regulator compare
AO353_24255 -1.0 -2.8 hypothetical protein compare
AO353_26840 -1.0 -2.6 RND transporter compare
AO353_10925 -1.0 -4.2 hypothetical protein compare
AO353_20660 -1.0 -2.5 pseudouridine synthase compare
AO353_03585 -1.0 -1.7 ATP-dependent DNA helicase RuvA compare
AO353_17935 -1.0 -2.5 hypothetical protein compare
AO353_20200 -1.0 -3.0 peptidylprolyl isomerase compare
AO353_04175 -1.0 -3.3 glycerol uptake facilitator GlpF compare
AO353_07465 -1.0 -2.6 addiction module toxin RelE compare
AO353_21640 -1.0 -1.4 cobalt transporter compare
AO353_09890 -0.9 -2.9 phosphate ABC transporter ATP-binding protein compare
AO353_27685 -0.9 -3.3 cold-shock protein compare
AO353_22945 -0.9 -6.6 glycogen branching protein compare
AO353_22120 -0.9 -3.1 cyclic pyranopterin phosphate synthase MoaA compare
AO353_07645 -0.9 -1.2 sarcosine oxidase subunit gamma compare
AO353_13670 -0.9 -3.1 ribosomal protein L11 methyltransferase compare
AO353_00750 -0.9 -2.9 GntR family transcriptional regulator compare
AO353_04500 -0.9 -1.7 DNA repair protein RecO compare
AO353_20495 -0.9 -1.9 NUDIX hydrolase compare
AO353_23495 -0.9 -1.9 SAM-dependent methyltransferase compare
AO353_18780 -0.9 -4.0 cobyrinic acid a,c-diamide synthase compare
AO353_23400 -0.9 -1.3 hypothetical protein compare
AO353_07505 -0.9 -4.6 dethiobiotin synthetase compare
AO353_02175 -0.9 -2.1 carbon storage regulator compare
AO353_22700 -0.9 -1.5 LexA family transcriptional regulator compare
AO353_08880 -0.9 -1.6 exopolyphosphatase compare
AO353_15185 -0.9 -3.1 ATPase compare
AO353_06040 -0.8 -2.2 exodeoxyribonuclease V subunit alpha compare
AO353_13530 -0.8 -2.3 ABC transporter ATP-binding protein compare
AO353_03820 -0.8 -2.0 Asp/Glu/hydantoin racemase compare
AO353_26090 -0.8 -1.8 hypothetical protein compare
AO353_21430 -0.8 -2.0 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Glycine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Glycine across organisms