Experiment set6IT088 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -8.6 -5.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS05100 -6.5 -4.5 RNA polymerase-binding protein DksA compare
ABZR87_RS21795 -4.8 -3.3 NUDIX domain-containing protein compare
ABZR87_RS04975 -4.7 -3.2 peptide deformylase compare
ABZR87_RS12960 -4.5 -1.2 head completion/stabilization protein compare
ABZR87_RS09505 -4.4 -7.9 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS08630 -4.3 -7.8 dihydroorotase compare
ABZR87_RS10195 -4.2 -2.7 signal peptidase I compare
ABZR87_RS08695 -4.1 -4.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS01855 -4.1 -9.1 A24 family peptidase compare
ABZR87_RS03460 -4.0 -10.3 type II secretion system inner membrane protein GspF compare
ABZR87_RS03455 -4.0 -9.2 type II secretion system ATPase GspE compare
ABZR87_RS06400 -3.5 -7.8 response regulator transcription factor compare
ABZR87_RS03430 -3.5 -10.9 type II secretion system minor pseudopilin GspK compare
ABZR87_RS13805 -3.5 -5.6 CBS domain-containing protein compare
ABZR87_RS03425 -3.5 -6.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS03410 -3.4 -5.2 type II secretion system major pseudopilin GspG compare
ABZR87_RS11470 -3.4 -5.2 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS03420 -3.4 -0.9 type II secretion system minor pseudopilin GspI compare
ABZR87_RS02640 -3.4 -13.0 diaminopimelate decarboxylase compare
ABZR87_RS02385 -3.4 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS01745 -3.3 -2.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS03435 -3.3 -3.3 type II secretion system protein GspL compare
ABZR87_RS03450 -3.3 -11.1 type II secretion system secretin GspD compare
ABZR87_RS01285 -3.3 -1.5 preprotein translocase subunit YajC compare
ABZR87_RS07355 -3.3 -3.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS03440 -3.2 -6.3 type II secretion system protein GspM compare
ABZR87_RS22420 -3.1 -1.5 nuclear transport factor 2 family protein compare
ABZR87_RS06350 -3.1 -9.2 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS02550 -3.1 -2.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS03565 -3.1 -5.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07735 -3.1 -4.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS03075 -3.1 -8.4 AGE family epimerase/isomerase compare
ABZR87_RS13250 -3.0 -2.3 phosphoserine phosphatase SerB compare
ABZR87_RS14540 -3.0 -5.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS09500 -3.0 -3.4 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS00970 -2.9 -1.7 molecular chaperone DnaJ compare
ABZR87_RS01035 -2.9 -5.4 histidine utilization repressor compare
ABZR87_RS16735 -2.9 -14.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS17650 -2.8 -6.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS12970 -2.8 -2.1 putative holin compare
ABZR87_RS01760 -2.7 -0.7 PP0621 family protein compare
ABZR87_RS11460 -2.7 -2.4 gephyrin-like molybdotransferase Glp compare
ABZR87_RS13790 -2.7 -5.4 chorismate synthase compare
ABZR87_RS14080 -2.7 -3.3 phosphate signaling complex protein PhoU compare
ABZR87_RS09465 -2.6 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS08750 -2.6 -4.5 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS01980 -2.6 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS02440 -2.6 -4.0 twin-arginine translocase subunit TatC compare
ABZR87_RS01085 -2.6 -2.1 rhombosortase compare
ABZR87_RS14535 -2.5 -4.2 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS06030 -2.5 -0.7 AraC family transcriptional regulator compare
ABZR87_RS22970 -2.5 -9.4 cystathionine gamma-synthase family protein compare
ABZR87_RS02570 -2.5 -14.5 glutamate synthase-related protein compare
ABZR87_RS20880 -2.5 -6.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS15715 -2.5 -6.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS18105 -2.5 -0.9 hypothetical protein compare
ABZR87_RS02595 -2.5 -8.3 shikimate kinase compare
ABZR87_RS10870 -2.5 -6.0 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS13645 -2.5 -0.6 hypothetical protein compare
ABZR87_RS04865 -2.5 -1.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02590 -2.5 -4.4 3-dehydroquinate synthase compare
ABZR87_RS14330 -2.4 -0.6 hypothetical protein compare
ABZR87_RS14505 -2.4 -3.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS21110 -2.4 -1.8 GntR family transcriptional regulator compare
ABZR87_RS02525 -2.4 -1.3 ABC transporter ATP-binding protein compare
ABZR87_RS02565 -2.4 -3.8 glutamate synthase subunit beta compare
ABZR87_RS14675 -2.4 -0.6 glyoxalase compare
ABZR87_RS01450 -2.4 -2.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS10120 -2.4 -1.0 YceD family protein compare
ABZR87_RS01615 -2.3 -0.8 RNB domain-containing ribonuclease compare
ABZR87_RS07380 -2.3 -9.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS08645 -2.3 -0.6 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS05200 -2.3 -11.7 homoserine O-acetyltransferase compare
ABZR87_RS02555 -2.3 -3.1 ABC transporter ATP-binding protein compare
ABZR87_RS06385 -2.2 -5.4 CHASE3 domain-containing protein compare
ABZR87_RS02150 -2.2 -1.9 lysozyme inhibitor LprI family protein compare
ABZR87_RS17235 -2.2 -3.0 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS02380 -2.2 -7.6 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS14500 -2.2 -8.1 tryptophan synthase subunit beta compare
ABZR87_RS08205 -2.2 -0.8 hypothetical protein compare
ABZR87_RS03445 -2.2 -5.1 type II secretion system protein N compare
ABZR87_RS21205 -2.2 -2.0 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS16515 -2.1 -1.4 helix-turn-helix domain-containing protein compare
ABZR87_RS05305 -2.1 -4.3 TetR family transcriptional regulator compare
ABZR87_RS02140 -2.1 -10.8 anthranilate synthase component I compare
ABZR87_RS13285 -2.1 -7.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS12665 -2.1 -0.8 ABC transporter ATP-binding protein compare
ABZR87_RS08795 -2.1 -2.0 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS09035 -2.1 -4.5 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS02535 -2.1 -3.2 phospholipid-binding protein MlaC compare
ABZR87_RS02160 -2.1 -2.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14910 -2.1 -2.1 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS14490 -2.1 -4.8 tryptophan synthase subunit alpha compare
ABZR87_RS16125 -2.1 -4.8 heme biosynthesis protein HemY compare
ABZR87_RS06455 -2.1 -1.6 IclR family transcriptional regulator compare
ABZR87_RS16730 -2.1 -4.3 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS02545 -2.1 -3.9 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS01275 -2.0 -3.3 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS11245 -2.0 -1.4 translational GTPase TypA compare
ABZR87_RS10170 -2.0 -3.2 RseA family anti-sigma factor compare
ABZR87_RS14665 -2.0 -0.7 histidine phosphatase family protein compare
ABZR87_RS06845 -2.0 -5.1 heme o synthase compare
ABZR87_RS02155 -2.0 -5.3 anthranilate phosphoribosyltransferase compare
ABZR87_RS15180 -2.0 -2.1 phage baseplate assembly protein V compare
ABZR87_RS14605 -2.0 -8.2 aconitate hydratase AcnA compare
ABZR87_RS02540 -2.0 -1.9 VacJ family lipoprotein compare
ABZR87_RS03415 -2.0 -6.0 GspH/FimT family pseudopilin compare
ABZR87_RS07665 -1.9 -6.0 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS11755 -1.9 -1.0 arsenate reductase compare
ABZR87_RS02375 -1.9 -6.0 cytochrome c1 compare
ABZR87_RS14005 -1.9 -1.5 MerR family transcriptional regulator compare
ABZR87_RS12120 -1.9 -1.0 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS02445 -1.9 -2.7 Sec-independent protein translocase protein TatB compare
ABZR87_RS02655 -1.9 -5.4 anti-sigma factor compare
ABZR87_RS09450 -1.9 -4.5 prephenate dehydratase compare
ABZR87_RS00200 -1.9 -2.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS08625 -1.9 -1.3 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS09710 -1.8 -1.6 tRNA-Arg compare
ABZR87_RS09445 -1.8 -7.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS16660 -1.8 -4.0 helix-turn-helix domain-containing protein compare
ABZR87_RS04880 -1.8 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS04635 -1.8 -2.4 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS10930 -1.8 -1.4 outer membrane protein assembly factor BamB compare
ABZR87_RS10980 -1.8 -0.6 tRNA-Leu compare
ABZR87_RS18400 -1.7 -1.1 hypothetical protein compare
ABZR87_RS15065 -1.7 -2.1 TMEM165/GDT1 family protein compare
ABZR87_RS16820 -1.7 -5.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01675 -1.7 -1.2 carbohydrate kinase family protein compare
ABZR87_RS15680 -1.7 -3.7 DNA polymerase I compare
ABZR87_RS08230 -1.7 -1.7 hypothetical protein compare
ABZR87_RS11440 -1.7 -4.4 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS01765 -1.7 -1.4 cytochrome c biogenesis protein CcsA compare
ABZR87_RS17270 -1.7 -1.2 hypothetical protein compare
ABZR87_RS08040 -1.7 -5.2 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS07360 -1.7 -7.1 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS23265 -1.7 -1.3 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS13205 -1.7 -2.0 hypothetical protein compare
ABZR87_RS00580 -1.7 -2.1 hypothetical protein compare
ABZR87_RS06250 -1.7 -2.3 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS11990 -1.7 -1.3 hypothetical protein compare
ABZR87_RS01280 -1.7 -2.5 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS08710 -1.6 -6.9 sugar transferase compare
ABZR87_RS14530 -1.6 -5.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS16740 -1.6 -5.7 2-methylcitrate synthase compare
ABZR87_RS14360 -1.6 -5.3 acetate--CoA ligase compare
ABZR87_RS04785 -1.6 -4.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS04160 -1.6 -1.4 LysR family transcriptional regulator compare
ABZR87_RS19680 -1.6 -8.0 potassium transporter Kup compare
ABZR87_RS04105 -1.6 -2.2 ATP synthase subunit I compare
ABZR87_RS18250 -1.6 -2.2 IclR family transcriptional regulator compare
ABZR87_RS15490 -1.6 -6.8 glycosyltransferase family 2 protein compare
ABZR87_RS09625 -1.6 -5.7 CobD/CbiB family protein compare
ABZR87_RS15605 -1.6 -1.0 hypothetical protein compare
ABZR87_RS12070 -1.6 -1.0 porin compare
ABZR87_RS06715 -1.5 -2.3 PTS sugar transporter subunit IIA compare
ABZR87_RS16540 -1.5 -1.2 MarR family transcriptional regulator compare
ABZR87_RS22900 -1.5 -3.7 MurR/RpiR family transcriptional regulator compare
ABZR87_RS04945 -1.5 -1.0 DUF4390 domain-containing protein compare
ABZR87_RS13355 -1.5 -2.2 hypothetical protein compare
ABZR87_RS15665 -1.5 -3.8 ZIP family metal transporter compare
ABZR87_RS06355 -1.5 -4.8 SPOR domain-containing protein compare
ABZR87_RS02575 -1.5 -4.9 transposase compare
ABZR87_RS22035 -1.5 -1.8 hypothetical protein compare
ABZR87_RS11715 -1.5 -1.6 glutathione ABC transporter permease GsiC compare
ABZR87_RS06770 -1.5 -5.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS06270 -1.5 -2.9 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS02680 -1.5 -2.9 c-type cytochrome compare
ABZR87_RS17995 -1.5 -1.0 chemotaxis response regulator CheY compare
ABZR87_RS08665 -1.5 -4.9 GNAT family N-acetyltransferase compare
ABZR87_RS06820 -1.4 -4.8 cytochrome c oxidase subunit 3 compare
ABZR87_RS11675 -1.4 -2.1 disulfide bond formation protein B compare
ABZR87_RS20555 -1.4 -2.0 helix-turn-helix transcriptional regulator compare
ABZR87_RS07710 -1.4 -4.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS12785 -1.4 -1.0 endopeptidase La compare
ABZR87_RS08045 -1.4 -3.1 zinc-finger domain-containing protein compare
ABZR87_RS19010 -1.4 -1.2 acyloxyacyl hydrolase compare
ABZR87_RS18420 -1.4 -1.8 hypothetical protein compare
ABZR87_RS19205 -1.4 -1.4 hypothetical protein compare
ABZR87_RS06745 -1.4 -4.2 S41 family peptidase compare
ABZR87_RS20430 -1.4 -1.3 YfiR family protein compare
ABZR87_RS02850 -1.4 -1.0 elongation factor Tu compare
ABZR87_RS01810 -1.4 -1.5 glutamate 5-kinase compare
ABZR87_RS09650 -1.4 -3.4 molybdopterin adenylyltransferase compare
ABZR87_RS17060 -1.4 -2.3 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS01225 -1.4 -1.4 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS12780 -1.4 -0.6 HU family DNA-binding protein compare
ABZR87_RS13315 -1.4 -5.0 RluA family pseudouridine synthase compare
ABZR87_RS19970 -1.4 -1.4 hypothetical protein compare
ABZR87_RS06680 -1.4 -2.1 hypothetical protein compare
ABZR87_RS12800 -1.4 -2.7 trigger factor compare
ABZR87_RS09955 -1.4 -3.6 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS20675 -1.4 -2.5 cupin domain-containing protein compare
ABZR87_RS14780 -1.4 -0.9 MaoC family dehydratase compare
ABZR87_RS15685 -1.3 -2.9 TIGR00730 family Rossman fold protein compare
ABZR87_RS21410 -1.3 -3.5 DUF2894 domain-containing protein compare
ABZR87_RS15290 -1.3 -1.2 hypothetical protein compare
ABZR87_RS13460 -1.3 -2.6 MFS transporter compare
ABZR87_RS19860 -1.3 -2.1 hypothetical protein compare
ABZR87_RS14970 -1.3 -2.2 DUF3106 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in in planta experiments

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms