Experiment set6IT088 for Bifidobacterium breve UCC2003

Compare to:

reconstituted MRS with D-Glucose 28 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -5.6 -5.4 chromosomal replication initiator protein DnaA compare
BBR_RS11210 -5.3 -20.1 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS18695 -3.8 -8.1 PRD domain-containing protein compare
BBR_RS13300 -3.7 -2.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS18700 -3.6 -9.1 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS18955 -3.6 -18.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS16635 -3.4 -2.3 ABC transporter ATP-binding protein compare
BBR_RS19375 -2.9 -2.8 acyl-CoA carboxylase subunit beta compare
BBR_RS12310 -2.9 -2.7 signal recognition particle protein compare
BBR_RS19125 -2.6 -12.0 hypothetical protein compare
BBR_RS10620 -2.6 -5.2 phosphoprotein phosphatase compare
BBR_RS20435 -2.5 -1.3 CCA tRNA nucleotidyltransferase compare
BBR_RS11205 -2.5 -3.1 HPr family phosphocarrier protein compare
BBR_RS19435 -2.5 -2.9 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS19760 -2.4 -2.8 polysaccharide ABC transporter ATPase compare
BBR_RS16675 -2.4 -5.9 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS12545 -2.4 -5.1 DUF4012 domain-containing protein compare
BBR_RS11470 -2.4 -1.6 6-phosphogluconolactonase compare
BBR_RS13030 -2.4 -2.3 cell division ATP-binding protein FtsE compare
BBR_RS10625 -2.4 -2.9 FHA domain-containing protein compare
BBR_RS15070 -2.1 -5.0 endolytic transglycosylase MltG compare
BBR_RS19120 -2.1 -9.8 helicase compare
BBR_RS15055 -2.1 -3.9 hypothetical protein compare
BBR_RS19160 -2.1 -1.5 phosphate ABC transporter permease subunit PstC compare
BBR_RS13040 -2.0 -1.4 CHAP domain-containing protein compare
BBR_RS10580 -2.0 -4.5 septation inhibitor protein compare
BBR_RS15755 -2.0 -2.2 hypothetical protein compare
BBR_RS17640 -2.0 -2.7 DNA-directed RNA polymerase subunit omega compare
BBR_RS12235 -1.9 -2.3 hypothetical protein compare
BBR_RS12045 -1.9 -4.5 hypothetical protein compare
BBR_RS18735 -1.9 -11.3 hypothetical protein compare
BBR_RS20465 -1.8 -7.0 chromosome partitioning protein compare
BBR_RS14190 -1.8 -9.2 transcriptional regulator compare
BBR_RS19165 -1.8 -3.6 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS19190 -1.8 -7.9 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS20850 -1.8 -1.4 resolvase compare
BBR_RS18565 -1.8 -2.1 CHAP domain-containing protein compare
BBR_RS18180 -1.8 -8.9 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS21015 -1.7 -1.7 hypothetical protein compare
BBR_RS19540 -1.7 -2.6 homoserine dehydrogenase compare
BBR_RS14205 -1.7 -3.5 hypothetical protein compare
BBR_RS16650 -1.7 -9.3 ABC transporter substrate-binding protein compare
BBR_RS16605 -1.7 -9.6 hypothetical protein compare
BBR_RS12900 -1.6 -3.7 DeoR/GlpR transcriptional regulator compare
BBR_RS14210 -1.6 -1.1 hypothetical protein compare
BBR_RS20460 -1.6 -4.7 chromosome partitioning protein ParB compare
BBR_RS14540 -1.6 -2.9 Na+/H+ antiporter NhaA compare
BBR_RS15455 -1.6 -2.0 orotate phosphoribosyltransferase compare
BBR_RS11510 -1.5 -3.2 signal recognition particle-docking protein FtsY compare
BBR_RS14070 -1.5 -5.9 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS13910 -1.5 -1.8 arginine repressor compare
BBR_RS13820 -1.5 -2.4 ATP-binding protein compare
BBR_RS10940 -1.5 -9.5 DedA family protein compare
BBR_RS12590 -1.5 -2.5 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS15130 -1.5 -3.8 metal-sulfur cluster assembly factor compare
BBR_RS14330 -1.4 -1.4 glycogen debranching enzyme GlgX compare
BBR_RS19815 -1.4 -11.4 ABC transporter permease compare
BBR_RS17495 -1.4 -8.0 DUF58 domain-containing protein compare
BBR_RS21170 -1.4 -7.5 membrane protein insertion efficiency factor YidD compare
BBR_RS20480 -1.4 -1.1 membrane protein compare
BBR_RS17510 -1.4 -7.3 VWA domain-containing protein compare
BBR_RS16940 -1.4 -4.7 hypothetical protein compare
BBR_RS16640 -1.4 -2.1 ABC transporter permease compare
BBR_RS11540 -1.4 -3.5 DUF1727 domain-containing protein compare
BBR_RS16750 -1.4 -2.6 ParA family protein compare
BBR_RS12985 -1.4 -7.0 MFS transporter compare
BBR_RS15080 -1.4 -2.6 chorismate synthase compare
BBR_RS20320 -1.4 -12.0 PTS ascorbate transporter subunit IIC compare
BBR_RS14370 -1.4 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS18745 -1.4 -1.1 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15425 -1.3 -1.8 aspartate carbamoyltransferase compare
BBR_RS13630 -1.3 -3.9 carbamoyl-phosphate synthase small subunit compare
BBR_RS17500 -1.3 -6.9 hypothetical protein compare
BBR_RS17505 -1.3 -7.1 VWA domain-containing protein compare
BBR_RS18690 -1.3 -6.6 diacylglycerol kinase compare
BBR_RS17490 -1.3 -8.9 MoxR family ATPase compare
BBR_RS12905 -1.3 -2.2 galactose-1-phosphate uridylyltransferase compare
BBR_RS10615 -1.3 -5.6 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS11135 -1.3 -10.2 dihydrodipicolinate synthase family protein compare
BBR_RS13035 -1.2 -0.8 ABC transporter permease compare
BBR_RS18725 -1.2 -2.5 ribonuclease HI compare
BBR_RS19820 -1.2 -10.5 ATP-binding protein of ABC transporter system compare
BBR_RS15450 -1.2 -3.1 dihydroorotate dehydrogenase compare
BBR_RS20330 -1.2 -7.9 PTS sugar transporter subunit IIA compare
BBR_RS14625 -1.2 -5.3 pyrroline-5-carboxylate reductase compare
BBR_RS20325 -1.1 -7.8 PTS lactose transporter subunit IIB compare
BBR_RS15050 -1.1 -2.9 DUF948 domain-containing protein compare
BBR_RS20440 -1.1 -4.1 NUDIX hydrolase compare
BBR_RS13635 -1.1 -4.8 carbamoyl-phosphate synthase large subunit compare
BBR_RS15085 -1.1 -1.4 3-dehydroquinate synthase compare
BBR_RS10905 -1.1 -5.5 nucleotide exchange factor GrpE compare
BBR_RS13125 -1.1 -1.6 ABC transporter permease compare
BBR_RS14265 -1.1 -4.0 Solute-binding protein of ABC transporter system for metals compare
BBR_RS13805 -1.1 -2.4 hypothetical protein compare
BBR_RS20430 -1.1 -1.6 hypothetical protein compare
BBR_RS13640 -1.0 -3.8 orotidine-5'-phosphate decarboxylase compare
BBR_RS16625 -1.0 -3.4 DUF3710 domain-containing protein compare
BBR_RS14075 -1.0 -5.2 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS12375 -1.0 -1.3 pantetheine-phosphate adenylyltransferase compare
BBR_RS16685 -1.0 -1.3 alcohol dehydrogenase compare
BBR_RS13515 -0.9 -4.3 putative sulfate exporter family transporter compare
BBR_RS17515 -0.9 -4.8 hypothetical protein compare
BBR_RS19155 -0.9 -5.0 phosphate ABC transporter, permease protein PstA compare
BBR_RS16425 -0.9 -1.5 DUF3071 domain-containing protein compare
BBR_RS18990 -0.9 -1.1 AbrB family transcriptional regulator compare
BBR_RS14230 -0.9 -3.2 HAMP domain-containing histidine kinase compare
BBR_RS15805 -0.9 -3.2 prolipoprotein diacylglyceryl transferase compare
BBR_RS15090 -0.9 -0.9 type II 3-dehydroquinate dehydratase compare
BBR_RS19445 -0.9 -7.7 glutamate 5-kinase compare
BBR_RS12605 -0.9 -2.9 glycosyltransferase family 2 protein compare
BBR_RS10720 -0.9 -7.1 PDZ domain-containing protein compare
BBR_RS15440 -0.9 -2.2 orotidine-5'-phosphate decarboxylase compare
BBR_RS18575 -0.8 -2.8 hypothetical protein compare
BBR_RS20870 -0.8 -1.5 hypothetical protein compare
BBR_RS10665 -0.8 -7.9 DUF2156 domain-containing protein compare
BBR_RS12370 -0.8 -1.0 cell division protein compare
BBR_RS16220 -0.8 -0.7 DNA cytosine methyltransferase compare
BBR_RS19795 -0.8 -7.3 hypothetical protein compare
BBR_RS10660 -0.8 -7.2 esterase compare
BBR_RS20720 -0.8 -3.0 DUF4422 domain-containing protein compare
BBR_RS16610 -0.8 -2.7 hypothetical protein compare
BBR_RS20415 -0.8 -7.1 G5 domain-containing protein compare
BBR_RS15520 -0.8 -1.9 shikimate 5-dehydrogenase compare
BBR_RS19755 -0.8 -5.6 glycosyl transferase compare
BBR_RS15180 -0.8 -4.5 long-chain fatty acid--CoA ligase compare
BBR_RS10735 -0.8 -5.8 zinc metalloprotease HtpX compare
BBR_RS16135 -0.8 -1.8 peptide deformylase compare
BBR_RS13070 -0.8 -1.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS15915 -0.8 -0.6 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS11720 -0.8 -2.8 DUF2469 domain-containing protein compare
BBR_RS15435 -0.8 -2.0 dihydroorotase compare
BBR_RS16965 -0.8 -1.0 ATP-dependent DNA helicase compare
BBR_RS12305 -0.7 -3.7 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS16430 -0.7 -1.9 nucleotide pyrophosphatase compare
BBR_RS11770 -0.7 -2.1 chorismate mutase compare
BBR_RS14140 -0.7 -0.8 Ppx/GppA family phosphatase compare
BBR_RS15665 -0.7 -1.7 preprotein translocase subunit YajC compare
BBR_RS14215 -0.7 -1.4 peptidase compare
BBR_RS18635 -0.7 -2.5 PspC domain-containing protein compare
BBR_RS19800 -0.7 -6.4 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS14985 -0.7 -1.9 ATP-dependent DNA helicase PcrA compare
BBR_RS13960 -0.7 -1.7 thiamine biosynthesis protein ThiS compare
BBR_RS12820 -0.7 -5.0 hypothetical protein compare
BBR_RS18215 -0.7 -3.5 AI-2E family transporter compare
BBR_RS17455 -0.7 -4.3 DNA-binding response regulator compare
BBR_RS19370 -0.6 -2.4 type I polyketide synthase compare
BBR_RS10570 -0.6 -2.5 hypothetical protein compare
BBR_RS13750 -0.6 -1.4 DivIVA domain-containing protein compare
BBR_RS14200 -0.6 -2.1 WhiB family transcriptional regulator compare
BBR_RS18220 -0.6 -4.7 glycosyltransferase family 2 protein compare
BBR_RS12505 -0.6 -1.3 ABC transporter permease compare
BBR_RS19645 -0.6 -3.9 RNA degradosome polyphosphate kinase compare
BBR_RS18170 -0.6 -1.4 dihydropteroate synthase compare
BBR_RS16795 -0.6 -2.8 Cys-tRNA(Pro) deacylase compare
BBR_RS13490 -0.6 -1.0 30S ribosomal protein S7 compare
BBR_RS17290 -0.6 -4.1 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19740 -0.6 -5.5 DUF2142 domain-containing protein compare
BBR_RS18120 -0.6 -1.1 hypothetical protein compare
BBR_RS11175 -0.6 -4.5 penicillin-binding protein compare
BBR_RS11315 -0.6 -4.6 MFS transporter compare
BBR_RS11805 -0.6 -3.2 hypothetical protein compare
BBR_RS16255 -0.6 -1.2 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS18050 -0.6 -1.2 threonylcarbamoyl-AMP synthase compare
BBR_RS16670 -0.6 -2.4 hypothetical protein compare
BBR_RS13740 -0.6 -2.0 DUF3052 domain-containing protein compare
BBR_RS18795 -0.6 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS16975 -0.5 -1.8 transcriptional repressor NrdR compare
BBR_RS11180 -0.5 -4.7 phosphatase PAP2 family protein compare
BBR_RS20400 -0.5 -5.1 serine/threonine protein kinase compare
BBR_RS12380 -0.5 -2.2 DUF3039 domain-containing protein compare
BBR_RS10265 -0.5 -3.9 DNA replication and repair protein RecF compare
BBR_RS12555 -0.5 -3.4 protein-tyrosine-phosphatase compare
BBR_RS16905 -0.5 -2.1 hypothetical protein compare
BBR_RS16520 -0.5 -3.5 ribosome-associated translation inhibitor RaiA compare
BBR_RS19535 -0.5 -4.5 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS20825 -0.5 -1.0 hypothetical protein compare
BBR_RS10755 -0.5 -2.5 adenylosuccinate synthase compare
BBR_RS21165 -0.5 -2.1 hypothetical protein compare
BBR_RS13840 -0.5 -2.0 DUF3043 domain-containing protein compare
BBR_RS11590 -0.5 -0.5 30S ribosomal protein S18 compare
BBR_RS16515 -0.5 -1.4 preprotein translocase subunit SecA compare
BBR_RS19095 -0.5 -4.1 magnesium transporter compare
BBR_RS16380 -0.5 -2.2 hypothetical protein compare
BBR_RS20475 -0.5 -4.5 KH domain-containing protein compare
BBR_RS13830 -0.5 -0.6 DUF4191 domain-containing protein compare
BBR_RS19290 -0.5 -2.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS12980 -0.5 -3.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12140 -0.5 -3.4 LacI family transcriptional regulator compare
BBR_RS15330 -0.5 -1.9 hypothetical protein compare
BBR_RS13005 -0.5 -4.2 aminopeptidase N compare
BBR_RS12610 -0.5 -2.2 capsular polysaccharide biosynthesis protein compare
BBR_RS11515 -0.5 -4.1 ammonium transporter compare
BBR_RS13080 -0.5 -3.3 LacI family DNA-binding transcriptional regulator compare
BBR_RS14085 -0.5 -1.3 nicotinate-nucleotide adenylyltransferase compare
BBR_RS10285 -0.5 -0.8 membrane protein compare
BBR_RS11950 -0.5 -1.8 tRNA-Tyr compare
BBR_RS16620 -0.5 -2.5 DUF3159 domain-containing protein compare
BBR_RS17905 -0.5 -4.6 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS20555 -0.5 -1.7 hypothetical protein compare
BBR_RS11505 -0.5 -4.0 TetR/AcrR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in carbon source experiments

For carbon source D-Glucose across organisms