Experiment set6IT087 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chloride 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3252 -4.2 -7.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3611 -4.1 -2.8 HflC protein compare
Pf6N2E2_5014 -4.0 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3839 -3.9 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_6099 -3.8 -1.8 tRNA-Glu-TTC compare
Pf6N2E2_4601 -3.7 -2.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5006 -3.5 -8.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5316 -3.5 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3834 -3.5 -8.6 Lipoprotein NlpD compare
Pf6N2E2_4803 -3.5 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3782 -3.4 -5.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5069 -3.2 -6.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2574 -3.1 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_156 -3.1 -3.0 Carbon storage regulator compare
Pf6N2E2_2274 -3.1 -5.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2755 -3.0 -2.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5242 -3.0 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5068 -3.0 -12.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5001 -2.9 -1.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4585 -2.8 -13.0 Cell division protein FtsX compare
Pf6N2E2_5337 -2.8 -4.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4071 -2.8 -3.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4077 -2.8 -2.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5956 -2.7 -6.9 FIG004453: protein YceG like compare
Pf6N2E2_1087 -2.7 -8.2 Iron siderophore sensor protein compare
Pf6N2E2_5339 -2.7 -6.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2278 -2.7 -14.6 Transcription-repair coupling factor compare
Pf6N2E2_4369 -2.6 -3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4611 -2.5 -4.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3282 -2.5 -1.7 FIG005080: Possible exported protein compare
Pf6N2E2_2825 -2.5 -4.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3198 -2.4 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3251 -2.4 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3253 -2.4 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5178 -2.4 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5342 -2.3 -2.9 21 kDa hemolysin precursor compare
Pf6N2E2_3842 -2.2 -4.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3521 -2.2 -8.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_4187 -2.2 -4.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5103 -2.1 -2.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_962 -2.1 -2.0 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_4584 -2.1 -3.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3610 -2.1 -3.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3841 -2.1 -5.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3617 -2.1 -4.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2127 -1.9 -4.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5338 -1.9 -7.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2312 -1.9 -2.5 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5150 -1.9 -4.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1056 -1.9 -1.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1636 -1.9 -7.1 Ferrichrome-iron receptor compare
Pf6N2E2_4305 -1.9 -1.6 FIG00959590: hypothetical protein compare
Pf6N2E2_3659 -1.9 -5.3 Protein fixF compare
Pf6N2E2_445 -1.8 -4.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2010 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_2311 -1.8 -6.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1040 -1.8 -1.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5086 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_2318 -1.8 -5.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2795 -1.8 -2.6 putative exported protein compare
Pf6N2E2_5520 -1.8 -5.5 Sensory box histidine kinase compare
Pf6N2E2_4159 -1.7 -4.1 Cytochrome c4 compare
Pf6N2E2_4454 -1.7 -5.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3783 -1.7 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2824 -1.7 -7.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4545 -1.7 -2.0 hypothetical protein compare
Pf6N2E2_3014 -1.7 -1.5 P2-like prophage tail protein X compare
Pf6N2E2_3332 -1.7 -4.8 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_3477 -1.7 -2.2 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3665 -1.7 -1.1 serine/threonine protein kinase compare
Pf6N2E2_2282 -1.6 -3.3 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2513 -1.6 -3.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2310 -1.6 -6.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5499 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_1083 -1.6 -2.3 hypothetical protein compare
Pf6N2E2_3908 -1.6 -5.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5111 -1.6 -2.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3661 -1.6 -3.8 hypothetical protein compare
Pf6N2E2_2088 -1.6 -2.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_1065 -1.6 -3.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3529 -1.6 -2.3 Toxin A compare
Pf6N2E2_3791 -1.6 -7.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2317 -1.6 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2508 -1.6 -3.3 hypothetical protein compare
Pf6N2E2_375 -1.6 -3.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2126 -1.5 -4.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3786 -1.5 -3.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_2300 -1.5 -2.6 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_3039 -1.5 -3.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5780 -1.5 -6.8 Periplasmic protease compare
Pf6N2E2_3303 -1.5 -3.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_6140 -1.5 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2510 -1.5 -3.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2823 -1.5 -3.6 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2984 -1.4 -1.8 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_42 -1.4 -2.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3257 -1.4 -2.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2200 -1.4 -1.5 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3833 -1.4 -3.8 hypothetical protein compare
Pf6N2E2_4352 -1.4 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4479 -1.4 -2.8 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_2459 -1.4 -2.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_493 -1.4 -3.3 YD repeat protein compare
Pf6N2E2_3658 -1.4 -5.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2527 -1.4 -2.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5671 -1.4 -2.8 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1545 -1.4 -3.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5156 -1.4 -2.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2754 -1.4 -2.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_3333 -1.4 -6.2 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf6N2E2_1248 -1.3 -1.9 MutT/nudix family protein compare
Pf6N2E2_2018 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_3460 -1.3 -1.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3264 -1.3 -2.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3330 -1.3 -5.4 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_4046 -1.3 -9.3 FIG00953482: hypothetical protein compare
Pf6N2E2_1012 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_2261 -1.3 -4.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_4889 -1.3 -3.7 Putative transport protein compare
Pf6N2E2_5536 -1.3 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5252 -1.3 -1.3 FIG00956396: hypothetical protein compare
Pf6N2E2_4743 -1.2 -1.0 hypothetical protein compare
Pf6N2E2_4205 -1.2 -2.4 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_664 -1.2 -1.9 Acetoin catabolism protein X compare
Pf6N2E2_4451 -1.2 -4.7 FIG139438: lipoprotein B compare
Pf6N2E2_2753 -1.2 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_144 -1.2 -8.4 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4418 -1.2 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5785 -1.2 -1.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_847 -1.2 -2.1 Phosphoribosyl transferase domain protein compare
Pf6N2E2_1336 -1.2 -2.0 AraC family transcription regulator compare
Pf6N2E2_3607 -1.2 -4.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5640 -1.2 -1.9 FIG00955597: hypothetical protein compare
Pf6N2E2_737 -1.2 -1.4 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3331 -1.2 -5.7 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation conserved
Pf6N2E2_1635 -1.2 -3.4 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_3829 -1.2 -2.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_2507 -1.2 -3.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3801 -1.2 -3.6 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf6N2E2_5508 -1.2 -1.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5771 -1.2 -4.3 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2794 -1.2 -1.3 putative membrane protein compare
Pf6N2E2_2320 -1.2 -2.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_1634 -1.2 -3.5 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_5944 -1.2 -4.2 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_145 -1.2 -5.7 putative exported protein compare
Pf6N2E2_1156 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_2633 -1.2 -1.4 Nitroreductase family protein compare
Pf6N2E2_39 -1.2 -3.1 FIG00857858: hypothetical protein compare
Pf6N2E2_6045 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_2062 -1.2 -2.2 FIG00955561: hypothetical protein compare
Pf6N2E2_3271 -1.1 -2.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2822 -1.1 -4.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2089 -1.1 -2.8 Transcriptional regulator, AraC family compare
Pf6N2E2_3875 -1.1 -1.2 FIG00953324: hypothetical protein compare
Pf6N2E2_4661 -1.1 -2.1 KluA regulatory protein compare
Pf6N2E2_3792 -1.1 -3.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_1563 -1.1 -3.2 Transcriptional regulator, AraC family compare
Pf6N2E2_3179 -1.1 -1.9 FIG021952: putative membrane protein compare
Pf6N2E2_5027 -1.1 -6.3 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_1534 -1.1 -1.6 Probable transmembrane protein compare
Pf6N2E2_3612 -1.1 -1.7 HflK protein compare
Pf6N2E2_2106 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_4045 -1.1 -2.6 FIG00953248: hypothetical protein compare
Pf6N2E2_4044 -1.1 -3.8 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_3940 -1.1 -5.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_241 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_728 -1.1 -2.1 Nitrate/nitrite transporter compare
Pf6N2E2_3300 -1.1 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_613 -1.1 -1.1 lipoprotein, putative compare
Pf6N2E2_2309 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_5679 -1.0 -3.2 hypothetical protein compare
Pf6N2E2_1165 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_2007 -1.0 -2.8 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_704 -1.0 -2.8 Cytochrome c551/c552 compare
Pf6N2E2_2506 -1.0 -6.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4360 -1.0 -5.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_5742 -1.0 -3.9 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_170 -1.0 -1.2 lipoprotein, putative compare
Pf6N2E2_2552 -1.0 -3.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4416 -1.0 -1.6 Tyrosine recombinase XerC compare
Pf6N2E2_5807 -1.0 -3.2 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_2201 -1.0 -2.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_1662 -1.0 -3.3 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase. compare
Pf6N2E2_2253 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1437 -1.0 -2.7 Acyl-CoA dehydrogenase family protein compare
Pf6N2E2_3589 -1.0 -1.4 Lysine decarboxylase family compare
Pf6N2E2_5733 -1.0 -3.3 NLP/P60 family protein compare
Pf6N2E2_1633 -1.0 -2.4 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_3243 -1.0 -6.0 FIG067310: hypothetical protein compare
Pf6N2E2_2003 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_1966 -1.0 -1.6 SAM-dependent methyltransferases compare
Pf6N2E2_882 -1.0 -2.6 FIG00961517: hypothetical protein compare
Pf6N2E2_2384 -1.0 -2.5 CmpX compare
Pf6N2E2_5328 -0.9 -1.7 FIG00958649: hypothetical protein compare
Pf6N2E2_2218 -0.9 -2.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5740 -0.9 -3.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_4206 -0.9 -0.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3461 -0.9 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1632 -0.9 -2.8 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chloride across organisms