Experiment set6IT087 for Rhodospirillum rubrum S1H
Sodium acetate; Light intensity 75 uM
Group: lightMedia: MELiSSA_defined_50mMCarbonate_noCarbon + Sodium acetate (62.5 mM) + Light intensity (75 uM)
Culturing: Rubrum_ML4a, flask, Anaerobic, at 28 (C), shaken=215 rpm
Growth: about 5.5 generations
By: Baptiste on 9/2/19
Media components: 0.051 mM Manganese (II) chloride tetrahydrate, 0.0811 mM Magnesium Sulfate Heptahydrate, 3.801 mM Sodium sulfate, 35.33 mM Ammonium chloride, 0.34 mM Calcium chloride dihydrate, 0.068 mM EDTA, 3.601 mM Potassium phosphate monobasic, 0.072 mM Iron (II) sulfate heptahydrate, 50 mM Sodium bicarbonate, 100.4 mM 3-(N-morpholino)propanesulfonic acid, 2.985 mM Potassium phosphate dibasic, 1.902 uM Nickel (II) sulfate hexahydrate, 0.348 uM Zinc sulfate heptahydrate, 0.02 uM Copper (II) sulfate pentahydrate, 1.623 uM Boric Acid, 0.207 uM Sodium Molybdate Dihydrate, 0.06 uM biotin
Specific Phenotypes
For 3 genes in this experiment
For light Sodium acetate in Rhodospirillum rubrum S1H
For light Sodium acetate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Chorismate Synthesis | 1 |
| Phenylalanine and Tyrosine Branches from Chorismate | 1 |
| Protein degradation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-tyrosine biosynthesis I | 3 | 3 | 1 |
| Arg/N-end rule pathway (eukaryotic) | 14 | 8 | 4 |
| L-tyrosine biosynthesis III | 4 | 2 | 1 |
| 4-hydroxy-3-prenylbenzoate biosynthesis | 4 | 1 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| superpathway of novobiocin biosynthesis | 19 | 4 | 1 |
| superpathway of chorismate metabolism | 59 | 37 | 1 |