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  • Experiment set6IT087 for Herbaspirillum seropedicae SmR1

    Compare to:

    Carbon source Phenylacetic acid 5 mM

    Genes with specific phenotypes:

      gene name fitness t score description  
    HSERO_RS20655 -5.0 -12.0 phenylacetate-CoA ligase conserved
    HSERO_RS20660 -4.9 -14.5 bifunctional thiolase PaaJ: 3-oxo-5,6-dehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) compare
    HSERO_RS20645 -4.7 -7.8 3-hydroxyacyl-CoA dehydrogenase conserved
    HSERO_RS20665 -4.6 -9.2 2,3-dehydroadipyl-CoA hydratase conserved
    HSERO_RS10535 -4.5 -14.4 LysR family transcriptional regulator compare
    HSERO_RS20640 -4.5 -7.4 enoyl-CoA hydratase conserved
    HSERO_RS20590 -4.1 -13.3 fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91) (from data) conserved
    HSERO_RS20635 -3.9 -11.2 aldehyde dehydrogenase conserved
    HSERO_RS20650 -2.5 -7.0 phenylacetic acid degradation protein conserved
    HSERO_RS08100 -1.7 -7.3 nicotinate phosphoribosyltransferase compare
    HSERO_RS15990 -1.7 -9.8 MarR family transcriptional regulator compare
    HSERO_RS16340 -1.7 -6.9 transcriptional regulator compare
    HSERO_RS11305 -1.6 -6.4 membrane protein compare
    HSERO_RS10525 +4.0 30.6 fusaric acid resistance protein compare
    HSERO_RS10515 +4.1 24.4 membrane protein compare
    HSERO_RS10530 +4.1 26.4 RND transporter compare
    HSERO_RS10520 +4.2 25.9 hypothetical protein compare


    Specific phenotypes for carbon source Phenylacetic acid across organisms