Experiment set6IT087 for Herbaspirillum seropedicae SmR1

Compare to:

Carbon source Phenylacetic acid 5 mM

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS10520 +4.2 25.9 hypothetical protein compare
HSERO_RS10530 +4.1 26.4 RND transporter compare
HSERO_RS10515 +4.1 24.4 membrane protein compare
HSERO_RS10525 +4.0 30.6 fusaric acid resistance protein compare
HSERO_RS16835 +3.1 23.5 phosphatidylglycerophosphatase compare
HSERO_RS15665 +1.7 1.7 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS09335 +1.4 3.5 DNA-3-methyladenine glycosylase compare
HSERO_RS21090 +1.3 7.5 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS08105 +1.3 6.8 sodium:proton antiporter compare
HSERO_RS10340 +1.2 5.0 flagellar biosynthesis protein FliS compare
HSERO_RS10290 +1.2 3.4 flagellar biosynthesis protein FliJ compare
HSERO_RS18600 +1.1 1.9 transcriptional regulator compare
HSERO_RS12995 +1.1 2.1 DNAase compare
HSERO_RS00450 +1.1 3.8 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS10200 +1.1 7.7 flagellar basal body rod protein FlgF compare
HSERO_RS21100 +1.1 7.0 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS13655 +1.1 5.2 hypothetical protein compare
HSERO_RS16305 +1.1 3.1 hypothetical protein compare
HSERO_RS13650 +1.0 6.9 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS05325 +1.0 1.3 ribose ABC transporter permease compare
HSERO_RS03875 +1.0 1.8 hypothetical protein compare
HSERO_RS09990 +1.0 1.9 glycosyl transferase compare
HSERO_RS07470 +1.0 1.6 ketosteroid isomerase compare
HSERO_RS18360 +1.0 3.2 hypothetical protein compare
HSERO_RS21075 +1.0 6.0 asparagine synthase compare
HSERO_RS10315 +1.0 6.4 flagellar hook-basal body protein FliE compare
HSERO_RS13890 +1.0 5.9 LuxR family transcriptional regulator compare
HSERO_RS16640 +1.0 3.1 ABC transporter substrate-binding protein compare
HSERO_RS08530 +1.0 4.3 glycine/betaine ABC transporter permease compare
HSERO_RS10215 +1.0 6.6 flagellar P-ring protein FlgI compare
HSERO_RS16150 +0.9 5.4 arginyl-tRNA-protein transferase compare
HSERO_RS10805 +0.9 1.6 succinyldiaminopimelate aminotransferase compare
HSERO_RS09420 +0.9 5.8 HAD family hydrolase compare
HSERO_RS13885 +0.9 5.4 histidine kinase compare
HSERO_RS00895 +0.9 3.4 L-proline ABC transporter, ATPase component 1 (from data) compare
HSERO_RS10305 +0.9 6.5 flagellar motor switch protein FliG compare
HSERO_RS14970 +0.9 4.1 flagellar motor protein MotB compare
HSERO_RS14985 +0.9 4.9 transcriptional regulator compare
HSERO_RS10255 +0.9 4.3 flagellar biosynthesis protein FliQ compare
HSERO_RS17855 +0.9 2.7 DEAD/DEAH box helicase compare
HSERO_RS20985 +0.9 0.9 serine acetyltransferase compare
HSERO_RS20825 +0.9 2.5 ABC transporter permease compare
HSERO_RS02800 +0.9 1.2 hypothetical protein compare
HSERO_RS10145 +0.9 6.6 flagellar biosynthesis protein FlhA compare
HSERO_RS13660 +0.9 2.5 membrane protein compare
HSERO_RS09205 +0.9 2.2 glutathione ABC transporter permease compare
HSERO_RS02065 +0.9 5.0 hypothetical protein compare
HSERO_RS04335 +0.9 1.9 sodium:proton antiporter compare
HSERO_RS10185 +0.8 5.0 flagellar basal body rod protein FlgC compare
HSERO_RS09910 +0.8 1.6 integration host factor subunit alpha compare
HSERO_RS10285 +0.8 4.3 flagellar hook-length control protein compare
HSERO_RS05300 +0.8 2.5 isomerase compare
HSERO_RS10140 +0.8 6.1 flagellar biosynthesis protein FlhB compare
HSERO_RS18740 +0.8 1.0 hypothetical protein compare
HSERO_RS10190 +0.8 2.4 flagellar basal body rod modification protein FlgD compare
HSERO_RS12400 +0.8 2.7 signal peptidase compare
HSERO_RS22315 +0.8 3.5 hypothetical protein compare
HSERO_RS22015 +0.8 2.2 DNA-binding protein compare
HSERO_RS10265 +0.8 4.9 flagellar biosynthesis protein FliO compare
HSERO_RS13565 +0.8 3.8 MarR family transcriptional regulator compare
HSERO_RS10210 +0.8 2.5 flagellar L-ring protein FlgH compare
HSERO_RS21095 +0.8 4.9 UDP-glucose 4-epimerase compare
HSERO_RS02580 +0.8 2.8 hypothetical protein compare
HSERO_RS14765 +0.8 1.7 membrane protein compare
HSERO_RS14640 +0.8 3.3 peptide chain release factor 3 compare
HSERO_RS10175 +0.8 5.4 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS12690 +0.7 2.6 transcriptional regulator compare
HSERO_RS10260 +0.7 4.9 flagellar biosynthesis protein FliP compare
HSERO_RS19550 +0.7 2.0 hypothetical protein compare
HSERO_RS10310 +0.7 4.7 flagellar M-ring protein FliF compare
HSERO_RS04340 +0.7 3.4 gamma-glutamyl ligase compare
HSERO_RS13645 +0.7 4.3 membrane protein compare
HSERO_RS06330 +0.7 3.5 transcriptional regulator compare
HSERO_RS05440 +0.7 0.9 hypothetical protein compare
HSERO_RS10295 +0.7 4.3 ATP synthase compare
HSERO_RS03045 +0.7 4.7 HrcA family transcriptional regulator compare
HSERO_RS04135 +0.7 1.5 amidohydrolase compare
HSERO_RS21640 +0.7 2.0 recombinase RdgC compare
HSERO_RS03915 +0.7 1.5 hypothetical protein compare
HSERO_RS06395 +0.7 2.6 DSBA oxidoreductase compare
HSERO_RS08790 +0.7 0.7 hypothetical protein compare
HSERO_RS10275 +0.7 3.4 flagellar motor switch protein FliM compare
HSERO_RS21590 +0.7 4.7 ATP-dependent DNA helicase Rep compare
HSERO_RS17290 +0.7 2.7 chromate transporter compare
HSERO_RS06270 +0.7 2.8 hemolysin protein compare
HSERO_RS12625 +0.7 1.4 sulfonate ABC transporter ATP-binding lipoprotein compare
HSERO_RS04270 +0.7 2.2 membrane protein compare
HSERO_RS03700 +0.7 1.6 type VI secretion protein compare
HSERO_RS10250 +0.7 3.5 flagellar biosynthesis protein FliR compare
HSERO_RS11215 +0.7 2.9 methionine sulfoxide reductase B compare
HSERO_RS04665 +0.7 2.2 nitrile hydratase compare
HSERO_RS21450 +0.7 2.3 lipid A biosynthesis acyltransferase compare
HSERO_RS05970 +0.7 1.2 ABC transporter compare
HSERO_RS01415 +0.7 2.6 5-carboxymethyl-2-hydroxymuconate isomerase compare
HSERO_RS03995 +0.7 1.3 hypothetical protein compare
HSERO_RS03415 +0.7 1.7 polyisoprenoid-binding protein compare
HSERO_RS00915 +0.7 4.5 ATP-dependent protease compare
HSERO_RS11590 +0.7 2.1 hypothetical protein compare
HSERO_RS06970 +0.7 2.1 cytochrome C553 compare
HSERO_RS14975 +0.7 3.3 flagellar motor protein MotA compare
HSERO_RS11165 +0.7 2.0 arylesterase compare
HSERO_RS18970 +0.7 2.0 hypothetical protein compare
HSERO_RS02425 +0.7 3.5 transcriptional activator compare
HSERO_RS12960 +0.7 1.9 hypothetical protein compare
HSERO_RS02275 +0.7 0.9 hypothetical protein compare
HSERO_RS10150 +0.7 5.3 flagellar biosynthesis regulator FlhF compare
HSERO_RS02775 +0.7 1.2 hypothetical protein compare
HSERO_RS00160 +0.6 2.9 hypothetical protein compare
HSERO_RS10970 +0.6 1.7 NfeD family protein compare
HSERO_RS10205 +0.6 2.7 flagellar basal body rod protein FlgG compare
HSERO_RS21085 +0.6 4.8 glycosyl transferase family 1 compare
HSERO_RS21135 +0.6 3.3 transcriptional regulator compare
HSERO_RS18630 +0.6 1.1 hemerythrin compare
HSERO_RS12765 +0.6 2.1 LysR family transcripitonal regulator compare
HSERO_RS01985 +0.6 1.7 energy transducer TonB compare
HSERO_RS17130 +0.6 3.2 ABC transporter compare
HSERO_RS22565 +0.6 2.0 AraC family transcriptional regulator compare
HSERO_RS23265 +0.6 2.3 ABC transporter compare
HSERO_RS06785 +0.6 3.6 metal-dependent hydrolase compare
HSERO_RS20340 +0.6 3.9 DNA methylase N-4 compare
HSERO_RS00800 +0.6 1.5 hypothetical protein compare
HSERO_RS16420 +0.6 2.7 phosphoesterase compare
HSERO_RS03190 +0.6 1.8 glutathione S-transferase compare
HSERO_RS12925 +0.6 1.6 catabolite repression CreA protein compare
HSERO_RS18690 +0.6 1.6 short-chain dehydrogenase compare
HSERO_RS05855 +0.6 2.6 flagellar motor protein MotA compare
HSERO_RS00805 +0.6 1.2 preprotein translocase subunit SecB compare
HSERO_RS18525 +0.6 2.3 hypothetical protein compare
HSERO_RS21080 +0.6 2.9 glycosyl transferase compare
HSERO_RS09005 +0.6 2.0 type I secretion protein HlyD compare
HSERO_RS10195 +0.6 3.9 flagellar hook protein FlgE compare
HSERO_RS04525 +0.6 2.1 lysozyme compare
HSERO_RS16890 +0.6 1.6 hypothetical protein compare
HSERO_RS01880 +0.6 1.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS13575 +0.6 3.4 DSBA oxidoreductase compare
HSERO_RS21735 +0.6 1.3 hypothetical protein compare
HSERO_RS13040 +0.6 1.6 hypothetical protein compare
HSERO_RS01290 +0.6 1.7 hypothetical protein compare
HSERO_RS10720 +0.6 1.4 alanine acetyltransferase compare
HSERO_RS12685 +0.6 2.8 isochorismatase hydrolase compare
HSERO_RS10355 +0.6 2.8 flagellin compare
HSERO_RS18550 +0.6 0.9 excinuclease ATPase subunit compare
HSERO_RS22525 +0.6 0.8 glyoxalase compare
HSERO_RS00815 +0.6 0.9 sulfurtransferase compare
HSERO_RS13715 +0.6 1.5 hypothetical protein compare
HSERO_RS14850 +0.6 2.2 glycosyltransferase compare
HSERO_RS03575 +0.5 1.2 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS06005 +0.5 2.0 hypothetical protein compare
HSERO_RS10595 +0.5 3.2 competence protein ComJ compare
HSERO_RS03950 +0.5 1.7 type III secretion HrpQ protein compare
HSERO_RS09255 +0.5 1.4 molybdenum cofactor biosynthesis protein MogA compare
HSERO_RS18220 +0.5 2.8 pilus assembly protein compare
HSERO_RS16860 +0.5 1.3 hypothetical protein compare
HSERO_RS10555 +0.5 2.6 ribonuclease compare
HSERO_RS14760 +0.5 3.3 membrane protein compare
HSERO_RS12865 +0.5 2.0 spore coat protein compare
HSERO_RS14930 +0.5 1.4 aldolase compare
HSERO_RS02700 +0.5 0.9 hypothetical protein compare
HSERO_RS09940 +0.5 1.7 peptidylprolyl isomerase compare
HSERO_RS09750 +0.5 2.6 8-amino-7-oxononanoate synthase compare
HSERO_RS22095 +0.5 1.4 hypothetical protein compare
HSERO_RS00745 +0.5 2.1 alkylhydroperoxidase compare
HSERO_RS13520 +0.5 1.7 hypothetical protein compare
HSERO_RS23600 +0.5 1.7 urea ABC transporter ATP-binding protein compare
HSERO_RS18625 +0.5 2.9 chemotaxis protein CheV compare
HSERO_RS01090 +0.5 1.2 hypothetical protein compare
HSERO_RS23135 +0.5 1.4 membrane protein compare
HSERO_RS20170 +0.5 2.2 hypothetical protein compare
HSERO_RS21745 +0.5 1.4 5'-methylthioadenosine nucleosidase compare
HSERO_RS10160 +0.5 2.3 flagellar biosynthesis sigma factor compare
HSERO_RS07530 +0.5 2.3 amino acid ABC transporter permease compare
HSERO_RS10180 +0.5 1.2 flagellar biosynthesis protein FlgB compare
HSERO_RS07595 +0.5 1.1 DNA mismatch repair protein MutT compare
HSERO_RS01320 +0.5 1.9 RND transporter MFP subunit compare
HSERO_RS20405 +0.5 1.2 GTP-binding protein YchF compare
HSERO_RS13515 +0.5 1.8 XRE family transcriptional regulator compare
HSERO_RS07660 +0.5 2.5 RND transporter compare
HSERO_RS11185 +0.5 1.3 amino acid dehydrogenase compare
HSERO_RS07855 +0.5 1.9 cysteine desulfurase compare
HSERO_RS05990 +0.5 1.5 hypothetical protein compare
HSERO_RS16275 +0.5 0.8 5-hydroxyisourate hydrolase compare
HSERO_RS18180 +0.5 1.3 nitrate reductase compare
HSERO_RS06940 +0.5 0.8 23S rRNA methyltransferase compare
HSERO_RS07625 +0.5 1.0 tryptophanyl-tRNA synthetase compare
HSERO_RS08155 +0.5 1.3 deacetylase compare
HSERO_RS15350 +0.5 1.4 membrane protein compare
HSERO_RS10655 +0.5 1.7 ribonuclease PH compare
HSERO_RS09010 +0.5 2.0 hypothetical protein compare
HSERO_RS11565 +0.5 2.4 cytochrome C oxidase subunit III compare
HSERO_RS21795 +0.5 0.7 CoA-binding protein compare
HSERO_RS22100 +0.5 3.2 hypothetical protein compare
HSERO_RS23220 +0.5 1.3 hypothetical protein compare
HSERO_RS05900 +0.5 2.0 ribonuclease compare
HSERO_RS22215 +0.5 1.5 branched-chain amino acid ABC transporter permease compare
HSERO_RS04740 +0.5 2.1 dienelactone hydrolase compare
HSERO_RS20970 +0.5 2.6 NDP-N-acetyl-D-mannosaminuronate dehydrogenase compare
HSERO_RS05240 +0.5 1.9 short-chain dehydrogenase compare
HSERO_RS23340 +0.5 2.5 lipoprotein compare
HSERO_RS04825 +0.5 1.4 XRE family transcriptional regulator compare
HSERO_RS12475 +0.5 1.1 histidine kinase compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Phenylacetic acid in Herbaspirillum seropedicae SmR1

For carbon source Phenylacetic acid across organisms