Experiment set6IT087 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Sodium nitrate 150 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS00715 -4.8 -3.7 ferritin compare
RR42_RS33255 -4.3 -4.1 protein-tyrosine phosphatase compare
RR42_RS18855 -3.7 -5.5 preprotein translocase compare
RR42_RS02810 -3.7 -2.5 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS18840 -3.6 -7.5 2-alkenal reductase compare
RR42_RS14080 -3.4 -10.8 RNA polymerase sigma factor RpoE compare
RR42_RS17885 -3.4 -5.5 ABC transporter permease compare
RR42_RS06450 -3.3 -10.9 membrane protein compare
RR42_RS15465 -3.0 -3.9 TonB-dependent receptor compare
RR42_RS07555 -3.0 -2.4 potassium transporter Kup compare
RR42_RS33260 -2.9 -7.9 multidrug MFS transporter compare
RR42_RS17105 -2.9 -11.2 Clp protease ClpX compare
RR42_RS00115 -2.9 -2.1 hypothetical protein compare
RR42_RS18270 -2.8 -3.7 murein transglycosylase compare
RR42_RS31530 -2.8 -3.9 histidine kinase compare
RR42_RS15745 -2.7 -10.6 group1 glycosyl transferase compare
RR42_RS04325 -2.7 -5.1 membrane protein compare
RR42_RS02775 -2.7 -1.7 molecular chaperone SurA compare
RR42_RS01260 -2.7 -10.7 lauroyl acyltransferase compare
RR42_RS15740 -2.5 -2.1 hypothetical protein compare
RR42_RS26935 -2.5 -5.9 farnesyl-diphosphate farnesyltransferase compare
RR42_RS15890 -2.5 -8.7 heme biosynthesis protein HemY compare
RR42_RS18970 -2.5 -15.0 toluene ABC transporter ATP-binding protein compare
RR42_RS14790 -2.4 -10.9 cobalamin biosynthesis protein CobD compare
RR42_RS15795 -2.4 -3.7 spore coat protein compare
RR42_RS07090 -2.3 -3.5 hypothetical protein compare
RR42_RS33240 -2.3 -11.2 GDP-L-fucose synthase compare
RR42_RS15410 -2.3 -4.2 membrane protein compare
RR42_RS13365 -2.3 -1.7 peptidase P60 compare
RR42_RS15770 -2.3 -5.3 hypothetical protein compare
RR42_RS15800 -2.3 -4.5 aldo/keto reductase compare
RR42_RS33250 -2.3 -6.1 tyrosine protein kinase compare
RR42_RS18965 -2.3 -13.4 ABC transporter permease compare
RR42_RS15895 -2.3 -5.6 uroporphyrinogen III methyltransferase compare
RR42_RS15475 -2.3 -5.8 protein tolQ compare
RR42_RS15460 -2.3 -5.7 translocation protein TolB compare
RR42_RS18725 -2.2 -3.1 hypothetical protein compare
RR42_RS06630 -2.2 -2.8 integration host factor subunit alpha compare
RR42_RS15790 -2.2 -5.5 aminotransferase class III compare
RR42_RS33210 -2.2 -4.5 teichoic acid biosynthesis protein compare
RR42_RS15710 -2.2 -4.0 LPS biosynthesis protein compare
RR42_RS15415 -2.2 -2.6 membrane protein compare
RR42_RS33245 -2.1 -8.1 mannose-1-phosphate guanyltransferase compare
RR42_RS18960 -2.1 -12.9 ABC transporter substrate-binding protein compare
RR42_RS33235 -2.1 -6.9 GDP-mannose 4,6-dehydratase compare
RR42_RS15455 -2.1 -5.3 membrane protein compare
RR42_RS03890 -2.1 -5.2 paraquat-inducible protein A compare
RR42_RS13910 -2.1 -5.4 glutamate racemase compare
RR42_RS13935 -2.0 -3.1 hemin transporter compare
RR42_RS21220 -2.0 -1.5 iron transporter FeoB compare
RR42_RS15720 -2.0 -5.5 hypothetical protein compare
RR42_RS15775 -2.0 -5.2 N-acetylneuraminate synthase compare
RR42_RS01985 -1.9 -9.6 zinc protease compare
RR42_RS04320 -1.9 -4.4 cell division protein FtsK compare
RR42_RS03895 -1.9 -3.7 paraquat-inducible protein A compare
RR42_RS18950 -1.9 -7.3 hypothetical protein compare
RR42_RS18425 -1.9 -1.6 hypothetical protein compare
RR42_RS08390 -1.9 -4.9 hypothetical protein compare
RR42_RS17865 -1.8 -6.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS17730 -1.8 -3.1 hypothetical protein compare
RR42_RS17620 -1.8 -3.2 phosphatidylglycerophosphatase compare
RR42_RS20775 -1.7 -1.1 hypothetical protein compare
RR42_RS12615 -1.7 -3.1 LexA family transcriptional regulator compare
RR42_RS03885 -1.7 -8.7 mammalian cell entry protein compare
RR42_RS15640 -1.7 -1.3 hypothetical protein compare
RR42_RS08645 -1.7 -2.4 phage capsid scaffolding protein compare
RR42_RS29315 -1.7 -8.3 AcrR family transcriptional regulator compare
RR42_RS01185 -1.7 -9.9 muropeptide transporter compare
RR42_RS33215 -1.7 -7.9 transferase compare
RR42_RS15470 -1.7 -2.1 biopolymer transporter ExbD compare
RR42_RS11840 -1.7 -3.3 zinc metalloprotease compare
RR42_RS01980 -1.7 -10.4 peptidase M16 compare
RR42_RS15785 -1.6 -7.3 glycosyl transferase family 28 compare
RR42_RS13040 -1.6 -4.4 iron transporter compare
RR42_RS06270 -1.6 -5.4 cupin compare
RR42_RS15090 -1.6 -4.1 DNA helicase compare
RR42_RS03085 -1.6 -1.2 RecX family transcriptional regulator compare
RR42_RS04255 -1.6 -2.0 chemotaxis protein CheW compare
RR42_RS17720 -1.6 -2.7 sugar kinase compare
RR42_RS03415 -1.6 -5.0 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS36045 -1.5 -5.2 hypothetical protein compare
RR42_RS01780 -1.5 -8.6 glutathione synthetase compare
RR42_RS02705 -1.5 -2.6 Holliday junction DNA helicase RuvA compare
RR42_RS03170 -1.5 -3.3 hypothetical protein compare
RR42_RS15750 -1.5 -5.0 hypothetical protein compare
RR42_RS04810 -1.5 -2.3 glycine/betaine ABC transporter permease compare
RR42_RS19065 -1.4 -5.5 transcriptional regulator compare
RR42_RS35875 -1.4 -5.9 UDP-galactose-4-epimerase compare
RR42_RS01405 -1.4 -10.2 lytic transglycosylase compare
RR42_RS18385 -1.4 -2.1 hypothetical protein compare
RR42_RS08450 -1.4 -1.6 hypothetical protein compare
RR42_RS01820 -1.4 -5.8 peptidase S41 compare
RR42_RS13190 -1.4 -3.9 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS33085 -1.4 -9.3 ligand-gated channel protein compare
RR42_RS01015 -1.4 -8.6 TonB-dependent receptor compare
RR42_RS01830 -1.4 -4.6 sulfurtransferase compare
RR42_RS08635 -1.4 -1.5 terminase compare
RR42_RS15810 -1.3 -1.9 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS14065 -1.3 -7.8 serine peptidase compare
RR42_RS01255 -1.3 -5.1 lauroyl acyltransferase compare
RR42_RS11280 -1.3 -1.8 phenylacetic acid degradation protein compare
RR42_RS15420 -1.3 -1.5 hypothetical protein compare
RR42_RS20440 -1.3 -1.5 histidine kinase compare
RR42_RS18945 -1.3 -2.8 toluene tolerance protein compare
RR42_RS06635 -1.3 -3.7 MerR family transcriptional regulator compare
RR42_RS32590 -1.3 -1.5 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS17110 -1.2 -5.8 ATP-dependent Clp protease adapter protein ClpS compare
RR42_RS02420 -1.2 -1.0 SAM-dependent methyltransferase compare
RR42_RS01680 -1.2 -8.1 cytochrome C550 compare
RR42_RS30735 -1.2 -1.8 tRNA-Met compare
RR42_RS33850 -1.2 -1.5 hypothetical protein compare
RR42_RS36040 -1.2 -6.6 TonB-dependent receptor compare
RR42_RS31330 -1.2 -1.3 LysR family transcriptional regulator compare
RR42_RS16525 -1.2 -2.0 anti-sigma factor compare
RR42_RS11180 -1.2 -3.5 peptidylprolyl isomerase compare
RR42_RS15715 -1.2 -4.4 glycosyl transferase compare
RR42_RS01795 -1.1 -8.2 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS20370 -1.1 -1.4 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS01775 -1.1 -3.9 glutamate--cysteine ligase compare
RR42_RS08040 -1.1 -2.2 hypothetical protein compare
RR42_RS19445 -1.1 -4.6 TetR family transcriptional regulator compare
RR42_RS18850 -1.1 -1.1 preprotein translocase subunit TatC compare
RR42_RS12015 -1.1 -1.7 dihydrolipoamide acyltransferase compare
RR42_RS37240 -1.1 -1.0 hypothetical protein compare
RR42_RS17665 -1.1 -2.4 chorismate lyase compare
RR42_RS15735 -1.1 -6.0 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS16225 -1.1 -7.1 cytosol aminopeptidase compare
RR42_RS18315 -1.1 -3.3 toxin compare
RR42_RS05790 -1.1 -3.0 lipoprotein compare
RR42_RS07410 -1.1 -4.2 peptidase S11 compare
RR42_RS17390 -1.1 -4.7 ATP-dependent DNA helicase RecG compare
RR42_RS09015 -1.1 -1.8 trigger factor compare
RR42_RS06925 -1.1 -1.4 hypothetical protein compare
RR42_RS19085 -1.1 -0.8 cytochrome C biogenesis protein ResB compare
RR42_RS24040 -1.1 -2.9 hypothetical protein compare
RR42_RS23110 -1.1 -1.3 isochorismatase compare
RR42_RS07120 -1.0 -2.0 hypothetical protein compare
RR42_RS22435 -1.0 -4.4 membrane protein compare
RR42_RS18000 -1.0 -5.4 cell division protein ZapD compare
RR42_RS12085 -1.0 -2.5 glyoxalase compare
RR42_RS13565 -1.0 -7.8 lytic transglycosylase compare
RR42_RS23130 -1.0 -3.6 bleomycin resistance protein compare
RR42_RS01990 -1.0 -2.2 methyltransferase compare
RR42_RS11120 -1.0 -3.0 DNA-binding protein compare
RR42_RS26365 -1.0 -2.2 dienelactone hydrolase compare
RR42_RS26580 -1.0 -1.2 hypothetical protein compare
RR42_RS11770 -1.0 -1.5 cyclase compare
RR42_RS16415 -1.0 -3.7 TetR family transcriptional regulator compare
RR42_RS27035 -1.0 -2.5 hypothetical protein compare
RR42_RS33080 -1.0 -4.8 IclR family transcriptional regulator compare
RR42_RS03715 -1.0 -1.9 inositol monophosphatase compare
RR42_RS19045 -1.0 -1.0 frataxin compare
RR42_RS08490 -1.0 -1.9 phage Rha protein compare
RR42_RS23250 -1.0 -3.0 glyoxalase compare
RR42_RS04535 -1.0 -3.1 cysteine synthase compare
RR42_RS19725 -1.0 -5.1 hypothetical protein compare
RR42_RS17045 -1.0 -4.8 SAM-dependent methyltransferase compare
RR42_RS18925 -1.0 -4.4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
RR42_RS36110 -0.9 -3.4 membrane protein compare
RR42_RS18670 -0.9 -3.0 metal-dependent hydrolase compare
RR42_RS25030 -0.9 -1.4 ABC transporter permease compare
RR42_RS07955 -0.9 -2.8 allantoate amidohydrolase compare
RR42_RS02750 -0.9 -4.4 mannose-1-phosphate guanylyltransferase compare
RR42_RS21435 -0.9 -2.1 hypothetical protein compare
RR42_RS08030 -0.9 -1.5 hypothetical protein compare
RR42_RS06255 -0.9 -1.4 lipoprotein compare
RR42_RS30905 -0.9 -2.0 aminotransferase DegT compare
RR42_RS04820 -0.9 -2.2 choline ABC transporter permease compare
RR42_RS05905 -0.9 -2.1 hypothetical protein compare
RR42_RS02765 -0.9 -6.1 aminoglycoside phosphotransferase compare
RR42_RS06225 -0.9 -4.1 phosphoesterase compare
RR42_RS16540 -0.9 -4.4 penicillin-binding protein compare
RR42_RS02030 -0.8 -1.6 membrane protein compare
RR42_RS28885 -0.8 -3.0 membrane protein compare
RR42_RS34060 -0.8 -1.6 alpha/beta hydrolase compare
RR42_RS07225 -0.8 -1.1 hypothetical protein compare
RR42_RS23870 -0.8 -1.2 hypothetical protein compare
RR42_RS07615 -0.8 -0.9 3-ketoacyl-ACP reductase compare
RR42_RS20680 -0.8 -1.9 membrane protein compare
RR42_RS13905 -0.8 -2.2 fumarate hydratase compare
RR42_RS30930 -0.8 -3.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
RR42_RS36290 -0.8 -1.9 ABC transporter substrate-binding protein compare
RR42_RS35250 -0.8 -0.8 alpha/beta hydrolase compare
RR42_RS06875 -0.8 -0.8 hypothetical protein compare
RR42_RS12050 -0.8 -3.4 DNA polymerase compare
RR42_RS17510 -0.8 -5.0 chemotaxis protein CheY compare
RR42_RS27790 -0.8 -1.5 LuxR family transcriptional regulator compare
RR42_RS01565 -0.8 -4.2 hypothetical protein compare
RR42_RS27550 -0.8 -0.9 hypothetical protein compare
RR42_RS05500 -0.8 -0.8 preprotein translocase subunit SecG compare
RR42_RS23355 -0.8 -0.9 flagellar biosynthetic protein FliQ compare
RR42_RS37260 -0.8 -3.6 hypothetical protein compare
RR42_RS32975 -0.8 -1.2 LysR family transcriptional regulator compare
RR42_RS21765 -0.8 -2.2 3-oxoacyl-ACP reductase compare
RR42_RS07565 -0.8 -4.0 transcription accessory protein compare
RR42_RS16685 -0.8 -1.8 tRNA-Leu compare
RR42_RS16510 -0.8 -1.5 hypothetical protein compare
RR42_RS08495 -0.8 -2.4 transcriptional regulator compare
RR42_RS06870 -0.8 -1.6 hypothetical protein compare
RR42_RS20570 -0.8 -0.9 biopolymer transporter ExbD compare


Specific Phenotypes

For 7 genes in this experiment

For stress Sodium nitrate in Cupriavidus basilensis FW507-4G11

For stress Sodium nitrate across organisms