Experiment set6IT087 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -8.4 -4.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -6.6 -4.6 NUDIX domain-containing protein compare
ABZR87_RS07355 -5.7 -3.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS08695 -5.1 -17.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS05100 -5.0 -7.6 RNA polymerase-binding protein DksA compare
ABZR87_RS00970 -4.9 -2.7 molecular chaperone DnaJ compare
ABZR87_RS02550 -4.7 -4.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS02535 -4.7 -3.2 phospholipid-binding protein MlaC compare
ABZR87_RS03420 -4.5 -1.1 type II secretion system minor pseudopilin GspI compare
ABZR87_RS02545 -4.4 -4.3 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS01855 -4.1 -12.4 A24 family peptidase compare
ABZR87_RS02160 -4.0 -5.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS08630 -4.0 -8.8 dihydroorotase compare
ABZR87_RS12800 -4.0 -3.9 trigger factor compare
ABZR87_RS03425 -3.9 -7.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS13790 -3.8 -10.6 chorismate synthase compare
ABZR87_RS02565 -3.8 -7.1 glutamate synthase subunit beta compare
ABZR87_RS08625 -3.8 -2.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS09465 -3.7 -8.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS03410 -3.7 -7.5 type II secretion system major pseudopilin GspG compare
ABZR87_RS07735 -3.6 -5.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS13645 -3.6 -0.9 hypothetical protein compare
ABZR87_RS02440 -3.5 -10.2 twin-arginine translocase subunit TatC compare
ABZR87_RS20880 -3.5 -9.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02640 -3.5 -16.2 diaminopimelate decarboxylase compare
ABZR87_RS02445 -3.5 -5.1 Sec-independent protein translocase protein TatB compare
ABZR87_RS03430 -3.5 -11.9 type II secretion system minor pseudopilin GspK compare
ABZR87_RS02555 -3.4 -7.6 ABC transporter ATP-binding protein compare
ABZR87_RS03440 -3.4 -5.7 type II secretion system protein GspM compare
ABZR87_RS08645 -3.4 -0.8 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS03435 -3.4 -6.9 type II secretion system protein GspL compare
ABZR87_RS02540 -3.4 -6.1 VacJ family lipoprotein compare
ABZR87_RS13250 -3.4 -3.4 phosphoserine phosphatase SerB compare
ABZR87_RS03455 -3.4 -11.0 type II secretion system ATPase GspE compare
ABZR87_RS03460 -3.3 -10.6 type II secretion system inner membrane protein GspF compare
ABZR87_RS16165 -3.3 -0.8 anti-sigma factor compare
ABZR87_RS08795 -3.3 -4.8 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS20875 -3.2 -6.7 LysR family transcriptional regulator compare
ABZR87_RS19010 -3.2 -2.9 acyloxyacyl hydrolase compare
ABZR87_RS00435 -3.2 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14490 -3.2 -10.3 tryptophan synthase subunit alpha compare
ABZR87_RS03450 -3.2 -13.8 type II secretion system secretin GspD compare
ABZR87_RS14540 -3.2 -6.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02590 -3.2 -10.3 3-dehydroquinate synthase compare
ABZR87_RS07380 -3.2 -17.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS03075 -3.1 -10.2 AGE family epimerase/isomerase compare
ABZR87_RS12785 -3.1 -3.0 endopeptidase La compare
ABZR87_RS04865 -3.1 -5.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS14505 -3.1 -4.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS13175 -3.0 -1.5 tRNA-Leu compare
ABZR87_RS06350 -3.0 -14.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS02570 -3.0 -19.1 glutamate synthase-related protein compare
ABZR87_RS09500 -3.0 -5.2 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS04975 -3.0 -3.0 peptide deformylase compare
ABZR87_RS08750 -3.0 -7.2 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS16960 -3.0 -3.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS12150 -2.9 -2.7 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS05590 -2.9 -2.0 orotate phosphoribosyltransferase compare
ABZR87_RS02655 -2.9 -10.1 anti-sigma factor compare
ABZR87_RS14535 -2.8 -5.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS06845 -2.8 -8.8 heme o synthase compare
ABZR87_RS10980 -2.8 -1.0 tRNA-Leu compare
ABZR87_RS07035 -2.8 -6.3 RNase adapter RapZ compare
ABZR87_RS06760 -2.8 -5.9 glutaredoxin 3 compare
ABZR87_RS14500 -2.8 -13.5 tryptophan synthase subunit beta compare
ABZR87_RS14530 -2.8 -8.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS14890 -2.8 -1.0 preprotein translocase subunit SecG compare
ABZR87_RS09615 -2.8 -1.1 50S ribosomal protein L19 compare
ABZR87_RS01685 -2.8 -4.6 histone H1-like DNA-binding protein compare
ABZR87_RS09445 -2.8 -11.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS01675 -2.8 -2.9 carbohydrate kinase family protein compare
ABZR87_RS11245 -2.7 -4.5 translational GTPase TypA compare
ABZR87_RS06405 -2.7 -0.9 hypothetical protein compare
ABZR87_RS16735 -2.6 -15.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS11940 -2.6 -3.7 SsrA-binding protein SmpB compare
ABZR87_RS02595 -2.6 -8.5 shikimate kinase compare
ABZR87_RS07625 -2.6 -1.7 Holliday junction branch migration protein RuvA compare
ABZR87_RS10120 -2.6 -1.5 YceD family protein compare
ABZR87_RS01980 -2.5 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS07965 -2.5 -4.5 recombinase RecA compare
ABZR87_RS04940 -2.5 -5.5 PAS domain-containing sensor histidine kinase compare
ABZR87_RS09505 -2.4 -6.3 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS13050 -2.4 -0.8 GpE family phage tail protein compare
ABZR87_RS08700 -2.4 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS04995 -2.4 -2.3 DNA topoisomerase III compare
ABZR87_RS05200 -2.4 -14.3 homoserine O-acetyltransferase compare
ABZR87_RS02385 -2.4 -5.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS13705 -2.4 -1.0 integration host factor subunit alpha compare
ABZR87_RS20555 -2.3 -2.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS02305 -2.3 -1.4 CDGSH iron-sulfur domain-containing protein compare
ABZR87_RS02140 -2.3 -12.9 anthranilate synthase component I compare
ABZR87_RS05305 -2.3 -8.3 TetR family transcriptional regulator compare
ABZR87_RS02380 -2.3 -9.9 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS10870 -2.3 -6.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS07470 -2.3 -9.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03445 -2.2 -5.7 type II secretion system protein N compare
ABZR87_RS13285 -2.2 -8.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS07360 -2.2 -9.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS16660 -2.2 -5.0 helix-turn-helix domain-containing protein compare
ABZR87_RS06745 -2.2 -6.5 S41 family peptidase compare
ABZR87_RS09895 -2.2 -1.2 DUF1841 family protein compare
ABZR87_RS07665 -2.2 -6.9 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS15715 -2.2 -7.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS01555 -2.2 -0.8 barstar family protein compare
ABZR87_RS01035 -2.2 -3.7 histidine utilization repressor compare
ABZR87_RS03415 -2.2 -8.3 GspH/FimT family pseudopilin compare
ABZR87_RS16250 -2.1 -2.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS08990 -2.1 -4.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS03565 -2.1 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS05065 -2.1 -3.1 tyrosine recombinase XerC compare
ABZR87_RS01745 -2.1 -4.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS01450 -2.1 -2.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS06715 -2.0 -3.0 PTS sugar transporter subunit IIA compare
ABZR87_RS04270 -2.0 -3.8 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS10195 -2.0 -2.6 signal peptidase I compare
ABZR87_RS01225 -2.0 -1.9 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS05570 -2.0 -7.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS14965 -2.0 -3.2 DUF3619 family protein compare
ABZR87_RS08980 -2.0 -3.0 cell envelope integrity protein TolA compare
ABZR87_RS01615 -1.9 -0.7 RNB domain-containing ribonuclease compare
ABZR87_RS16820 -1.9 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS04785 -1.9 -8.3 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS13475 -1.9 -3.2 PAS domain S-box protein compare
ABZR87_RS11010 -1.9 -2.2 oxidative damage protection protein compare
ABZR87_RS09450 -1.9 -4.6 prephenate dehydratase compare
ABZR87_RS22970 -1.9 -7.9 cystathionine gamma-synthase family protein compare
ABZR87_RS01700 -1.9 -1.4 DUF2147 domain-containing protein compare
ABZR87_RS15485 -1.9 -4.3 glycosyltransferase family 2 protein compare
ABZR87_RS17995 -1.9 -1.3 chemotaxis response regulator CheY compare
ABZR87_RS08970 -1.8 -4.3 protein TolQ compare
ABZR87_RS14970 -1.8 -3.5 DUF3106 domain-containing protein compare
ABZR87_RS11015 -1.8 -3.9 amino-acid N-acetyltransferase compare
ABZR87_RS00875 -1.8 -4.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS05965 -1.8 -1.8 hemerythrin domain-containing protein compare
ABZR87_RS02145 -1.8 -1.6 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS12955 -1.8 -5.8 terminase endonuclease subunit compare
ABZR87_RS17650 -1.8 -4.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06400 -1.8 -5.4 response regulator transcription factor compare
ABZR87_RS12790 -1.8 -1.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS18140 -1.7 -3.0 type III secretion system export apparatus subunit SctR compare
ABZR87_RS14605 -1.7 -6.8 aconitate hydratase AcnA compare
ABZR87_RS02375 -1.7 -7.2 cytochrome c1 compare
ABZR87_RS07730 -1.7 -2.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS10610 -1.7 -0.8 inositol monophosphatase family protein compare
ABZR87_RS20665 -1.7 -2.9 IclR family transcriptional regulator compare
ABZR87_RS16055 -1.7 -4.4 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS11495 -1.7 -1.3 NADPH-dependent FMN reductase compare
ABZR87_RS15645 -1.7 -3.4 exodeoxyribonuclease VII small subunit compare
ABZR87_RS02155 -1.7 -4.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS16740 -1.7 -6.2 2-methylcitrate synthase compare
ABZR87_RS22920 -1.7 -2.8 phosphogluconate dehydratase compare
ABZR87_RS09515 -1.7 -0.9 cysteine synthase CysM compare
ABZR87_RS02575 -1.7 -7.7 transposase compare
ABZR87_RS19320 -1.7 -0.8 hypothetical protein compare
ABZR87_RS21950 -1.7 -4.1 hypothetical protein compare
ABZR87_RS14360 -1.6 -6.6 acetate--CoA ligase compare
ABZR87_RS23265 -1.6 -2.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS16540 -1.6 -1.5 MarR family transcriptional regulator compare
ABZR87_RS08710 -1.6 -10.2 sugar transferase compare
ABZR87_RS10190 -1.6 -5.9 translation elongation factor 4 compare
ABZR87_RS08985 -1.6 -6.3 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS11815 -1.6 -7.0 [protein-PII] uridylyltransferase compare
ABZR87_RS11625 -1.6 -5.5 malate synthase A compare
ABZR87_RS01485 -1.6 -2.3 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS08670 -1.6 -8.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS10350 -1.6 -2.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02850 -1.6 -2.2 elongation factor Tu compare
ABZR87_RS08040 -1.5 -3.9 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS01270 -1.5 -6.0 ATP-dependent DNA helicase RecG compare
ABZR87_RS11195 -1.5 -6.4 pseudouridine synthase compare
ABZR87_RS04880 -1.5 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS21810 -1.5 -1.8 enoyl-CoA hydratase compare
ABZR87_RS19050 -1.5 -3.1 glycosyltransferase family 39 protein compare
ABZR87_RS09710 -1.5 -2.7 tRNA-Arg compare
ABZR87_RS06705 -1.5 -8.2 glutamate--cysteine ligase compare
ABZR87_RS18445 -1.5 -2.6 MaoC family dehydratase compare
ABZR87_RS10565 -1.5 -1.7 cupin domain-containing protein compare
ABZR87_RS06495 -1.5 -0.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS18695 -1.4 -4.4 sugar-binding transcriptional regulator compare
ABZR87_RS15665 -1.4 -3.4 ZIP family metal transporter compare
ABZR87_RS16845 -1.4 -0.7 hypothetical protein compare
ABZR87_RS11435 -1.4 -2.2 Mth938-like domain-containing protein compare
ABZR87_RS01645 -1.4 -3.5 type II 3-dehydroquinate dehydratase compare
ABZR87_RS07700 -1.4 -1.0 peptidylprolyl isomerase compare
ABZR87_RS16730 -1.4 -2.6 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS08555 -1.4 -2.0 hypothetical protein compare
ABZR87_RS15490 -1.4 -6.4 glycosyltransferase family 2 protein compare
ABZR87_RS05205 -1.4 -3.9 methionine biosynthesis protein MetW compare
ABZR87_RS07060 -1.3 -8.6 RNA polymerase factor sigma-54 compare
ABZR87_RS21285 -1.3 -1.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS15605 -1.3 -1.6 hypothetical protein compare
ABZR87_RS04835 -1.3 -2.0 hypothetical protein compare
ABZR87_RS13315 -1.3 -6.1 RluA family pseudouridine synthase compare
ABZR87_RS13415 -1.3 -3.5 IclR family transcriptional regulator compare
ABZR87_RS07005 -1.3 -1.1 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS01110 -1.3 -5.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS00325 -1.3 -1.3 peptidylprolyl isomerase compare
ABZR87_RS06810 -1.3 -4.8 cytochrome c oxidase assembly protein compare
ABZR87_RS17730 -1.3 -4.9 GntR family transcriptional regulator compare
ABZR87_RS01810 -1.3 -1.1 glutamate 5-kinase compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in in planta experiments

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms