Experiment set6IT086 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Threonine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_24130 -5.1 -4.9 hypothetical protein compare
AO353_20620 -4.3 -7.7 isopropylmalate isomerase compare
AO353_05115 -4.2 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20695 -4.1 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -4.1 -4.8 3-isopropylmalate dehydratase compare
AO353_03510 -4.0 -4.0 glycine cleavage system protein T compare
AO353_12070 -3.9 -8.4 imidazoleglycerol-phosphate dehydratase compare
AO353_12520 -3.9 -12.8 glutamate synthase compare
AO353_08185 -3.8 -11.5 methionine biosynthesis protein MetW compare
AO353_07230 -3.8 -16.9 anthranilate synthase compare
AO353_00310 -3.7 -9.8 transaldolase compare
AO353_05110 -3.6 -12.0 histidinol dehydrogenase compare
AO353_08345 -3.6 -9.6 dihydroxy-acid dehydratase compare
AO353_12515 -3.6 -22.2 glutamate synthase compare
AO353_20635 -3.6 -14.3 3-isopropylmalate dehydrogenase compare
AO353_12075 -3.6 -8.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_22945 -3.5 -16.1 glycogen branching protein compare
AO353_10710 -3.5 -4.7 tryptophan synthase subunit beta compare
AO353_12145 -3.5 -5.3 nitrogen regulation protein NR(I) compare
AO353_12085 -3.5 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12150 -3.4 -8.5 histidine kinase compare
AO353_20665 -3.4 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14505 -3.3 -13.6 ketol-acid reductoisomerase compare
AO353_02710 -3.3 -10.5 (p)ppGpp synthetase compare
AO353_12090 -3.3 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_09000 -3.3 -5.9 argininosuccinate lyase compare
AO353_18985 -3.3 -4.5 hypothetical protein compare
AO353_09240 -3.2 -3.1 acetylglutamate kinase compare
AO353_07220 -3.2 -9.3 anthranilate synthase compare
AO353_08685 -3.2 -10.3 N-acetylglutamate synthase compare
AO353_22800 -3.2 -4.7 sulfite reductase compare
AO353_07670 -3.1 -10.5 L-threonine aldolase (EC 4.1.2.5) (from data) conserved
AO353_12365 -3.1 -5.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_04155 -3.0 -12.6 ornithine carbamoyltransferase compare
AO353_13165 -3.0 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_15925 -3.0 -15.0 2-isopropylmalate synthase compare
AO353_08180 -3.0 -13.4 homoserine O-acetyltransferase compare
AO353_12500 -3.0 -2.0 shikimate kinase compare
AO353_08780 -3.0 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02070 -2.9 -9.5 prephenate dehydratase compare
AO353_08015 -2.8 -8.1 5,10-methylenetetrahydrofolate reductase compare
AO353_03500 -2.8 -13.6 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
AO353_13100 -2.7 -2.9 GTPase RsgA compare
AO353_04105 -2.7 -10.0 argininosuccinate synthase compare
AO353_14495 -2.7 -11.6 acetolactate synthase 3 catalytic subunit compare
AO353_03495 -2.7 -6.1 glycine cleavage system protein H conserved
AO353_20175 -2.6 -4.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_07215 -2.6 -7.5 anthranilate phosphoribosyltransferase compare
AO353_08885 -2.5 -16.0 polyphosphate kinase compare
AO353_07210 -2.5 -6.8 indole-3-glycerol-phosphate synthase compare
AO353_10025 -2.5 -14.9 pyruvate carboxylase subunit B compare
AO353_07155 -2.5 -7.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14420 -2.5 -3.7 molecular chaperone DnaK compare
AO353_12360 -2.4 -9.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_10030 -2.4 -11.7 pyruvate carboxylase subunit A compare
AO353_00825 -2.4 -5.7 porin compare
AO353_14115 -2.4 -7.8 gamma-glutamyl kinase compare
AO353_02975 -2.3 -4.3 aspartate kinase compare
AO353_20540 -2.3 -7.6 aromatic amino acid aminotransferase compare
AO353_08475 -2.3 -9.7 phosphoserine phosphatase compare
AO353_14500 -2.3 -7.1 acetolactate synthase 3 regulatory subunit compare
AO353_10705 -2.2 -4.9 tryptophan synthase subunit alpha compare
AO353_03360 -2.2 -8.9 glucose-6-phosphate dehydrogenase compare
AO353_12105 -2.1 -7.1 peptidase S41 compare
AO353_09070 -2.1 -11.3 ammonia channel protein compare
AO353_03490 -2.1 -7.9 Fis family transcriptional regulator conserved
AO353_02250 -2.1 -4.2 chorismate synthase compare
AO353_01375 -2.0 -7.1 phosphate acyltransferase compare
AO353_09915 -2.0 -7.0 long-chain acyl-CoA thioester hydrolase compare
AO353_12015 -2.0 -3.1 antitoxin compare
AO353_03580 -2.0 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_10035 -2.0 -7.7 LysR family transcriptional regulator compare
AO353_20095 -2.0 -5.7 histidine kinase compare
AO353_00900 -2.0 -8.1 2-methylisocitrate lyase compare
AO353_03590 -1.9 -4.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_06045 -1.9 -7.7 exodeoxyribonuclease V subunit beta compare
AO353_14220 -1.9 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_07355 -1.9 -6.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_16450 -1.9 -9.7 protein-PII uridylyltransferase compare
AO353_06495 -1.9 -5.3 gamma-glutamyl phosphate reductase compare
AO353_08165 -1.9 -3.2 pyrroline-5-carboxylate reductase compare
AO353_00885 -1.8 -2.8 3-methylitaconate isomerase compare
AO353_12115 -1.8 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03615 -1.8 -3.5 cold-shock protein compare
AO353_00890 -1.7 -5.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_02040 -1.7 -3.4 integration host factor subunit beta compare
AO353_14775 -1.6 -6.2 hypothetical protein compare
AO353_27950 -1.6 -2.9 hypothetical protein compare
AO353_09250 -1.6 -3.5 exodeoxyribonuclease III compare
AO353_26885 -1.6 -7.3 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
AO353_03585 -1.6 -2.0 ATP-dependent DNA helicase RuvA compare
AO353_14370 -1.6 -6.3 glucose-6-phosphate isomerase compare
AO353_20660 -1.6 -3.6 pseudouridine synthase compare
AO353_10670 -1.6 -5.6 shikimate dehydrogenase compare
AO353_21625 -1.5 -2.2 Fe/S biogenesis protein NfuA compare
AO353_01975 -1.5 -6.2 glycosyl transferase compare
AO353_27650 -1.5 -4.7 cell division protein FtsK compare
AO353_02000 -1.5 -4.0 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_01550 -1.5 -4.0 hypothetical protein compare
AO353_00495 -1.4 -2.5 DNA topoisomerase I compare
AO353_15250 -1.4 -3.3 cytochrome B compare
AO353_02720 -1.4 -4.8 cysteine synthase compare
AO353_10445 -1.4 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_05105 -1.3 -7.5 histidinol-phosphate aminotransferase compare
AO353_06050 -1.3 -5.6 exodeoxyribonuclease V subunit gamma compare
AO353_09285 -1.3 -6.9 reactive intermediate/imine deaminase compare
AO353_03020 -1.3 -6.0 arginine N-succinyltransferase compare
AO353_05690 -1.3 -3.2 SsrA-binding protein compare
AO353_18135 -1.2 -1.8 hypothetical protein compare
AO353_02195 -1.2 -3.7 spermidine synthase compare
AO353_05420 -1.2 -1.9 peptide chain release factor 3 compare
AO353_09320 -1.2 -6.3 ATP-dependent DNA helicase RecG compare
AO353_03100 -1.2 -2.4 XRE family transcriptional regulator compare
AO353_19060 -1.2 -4.4 CysB family transcriptional regulator compare
AO353_13140 -1.2 -4.7 tRNA dimethylallyltransferase compare
AO353_19360 -1.2 -2.3 peroxiredoxin compare
AO353_09135 -1.1 -2.1 cytochrome C compare
AO353_10430 -1.1 -3.1 chromosome partitioning protein ParB compare
AO353_16745 -1.1 -1.8 ArsR family transcriptional regulator compare
AO353_07525 -1.1 -7.6 biotin synthase compare
AO353_05010 -1.1 -2.1 HopJ type III effector protein compare
AO353_08350 -1.1 -5.4 hypothetical protein compare
AO353_05625 -1.1 -1.4 transcription elongation factor GreA compare
AO353_15385 -1.1 -1.7 hypothetical protein compare
AO353_10455 -1.1 -1.4 tRNA modification GTPase MnmE compare
AO353_27685 -1.1 -3.6 cold-shock protein compare
AO353_03250 -1.1 -2.2 gluconokinase compare
AO353_17640 -1.0 -2.0 serine peptidase compare
AO353_11340 -1.0 -1.8 MarR family transcriptional regulator compare
AO353_01220 -1.0 -1.5 hypothetical protein compare
AO353_05080 -1.0 -6.2 sulfate adenylyltransferase compare
AO353_19290 -1.0 -2.9 molybdenum cofactor sulfurase compare
AO353_16765 -1.0 -2.5 hypothetical protein compare
AO353_03420 -1.0 -3.6 phosphogluconate dehydratase compare
AO353_05130 -1.0 -1.1 anti-anti-sigma factor compare
AO353_27925 -1.0 -2.3 hypothetical protein compare
AO353_08100 -1.0 -2.5 chemotaxis protein CheY compare
AO353_12580 -1.0 -1.4 type II secretory protein PulK compare
AO353_08485 -0.9 -6.4 threonine dehydratase compare
AO353_18335 -0.9 -2.5 hypothetical protein compare
AO353_09890 -0.9 -3.7 phosphate ABC transporter ATP-binding protein compare
AO353_00810 -0.9 -2.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_24260 -0.9 -1.8 hypothetical protein compare
AO353_19250 -0.9 -1.8 molybdenum cofactor guanylyltransferase compare
AO353_06040 -0.9 -2.5 exodeoxyribonuclease V subunit alpha compare
AO353_08210 -0.9 -3.3 tRNA (guanine-N7)-methyltransferase compare
AO353_02945 -0.9 -4.5 magnesium transporter compare
AO353_23440 -0.9 -2.2 hypothetical protein compare
AO353_14400 -0.9 -2.8 Fis family transcriptional regulator compare
AO353_08120 -0.9 -2.5 hypothetical protein compare
AO353_13225 -0.9 -1.9 50S ribosomal protein L9 compare
AO353_12665 -0.9 -2.1 glycosyl transferase compare
AO353_12690 -0.9 -1.1 acyl carrier protein compare
AO353_03545 -0.9 -4.5 hypothetical protein compare
AO353_11945 -0.9 -1.4 4-oxalocrotonate tautomerase compare
AO353_12080 -0.9 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_02640 -0.9 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_28320 -0.9 -1.9 aminopeptidase compare
AO353_04220 -0.9 -3.7 chemotaxis protein CheY compare
AO353_07515 -0.9 -1.5 transporter compare
AO353_14395 -0.9 -3.0 poly(A) polymerase compare
AO353_21110 -0.9 -1.7 hypothetical protein compare
AO353_20510 -0.8 -1.7 amidase compare
AO353_07105 -0.8 -1.2 biotin--protein ligase compare
AO353_07315 -0.8 -1.6 rRNA methyltransferase compare
AO353_19605 -0.8 -1.5 hypothetical protein compare
AO353_21425 -0.8 -3.2 hypothetical protein compare
AO353_01795 -0.8 -2.0 hypothetical protein compare
AO353_02600 -0.8 -1.5 alpha-ribazole phosphatase compare
AO353_06100 -0.8 -1.8 thymidylate synthase compare
AO353_02940 -0.8 -1.8 DNA-binding protein compare
AO353_13245 -0.8 -4.0 hypothetical protein compare
AO353_03595 -0.8 -2.3 hypothetical protein compare
AO353_10440 -0.8 -2.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_05800 -0.8 -2.8 hypothetical protein compare
AO353_09345 -0.8 -1.9 hypothetical protein compare
AO353_17885 -0.8 -1.4 hypothetical protein compare
AO353_03505 -0.8 -4.2 serine dehydratase compare
AO353_18305 -0.8 -2.8 RNA helicase compare
AO353_05075 -0.8 -4.7 adenylylsulfate kinase compare
AO353_24595 -0.8 -1.3 hypothetical protein compare
AO353_13200 -0.8 -5.1 exoribonuclease R compare
AO353_15545 -0.8 -3.3 IclR family transcriptional regulator compare
AO353_03235 -0.8 -4.1 glutamate-pyruvate aminotransferase compare
AO353_07290 -0.8 -4.0 mannose-1-phosphate guanylyltransferase compare
AO353_01080 -0.7 -4.5 hypothetical protein compare
AO353_23160 -0.7 -3.1 hydrolase compare
AO353_06405 -0.7 -2.7 hypothetical protein compare
AO353_27680 -0.7 -2.8 ATP-dependent Clp protease adaptor ClpS compare
AO353_24340 -0.7 -1.5 TetR family transcriptional regulator compare
AO353_22370 -0.7 -2.1 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_17785 -0.7 -1.7 hypothetical protein compare
AO353_08110 -0.7 -3.3 glutathione synthetase compare
AO353_13690 -0.7 -5.4 thiol:disulfide interchange protein compare
AO353_22735 -0.7 -1.7 hypothetical protein compare
AO353_18450 -0.7 -2.7 hypothetical protein compare
AO353_03025 -0.7 -2.7 acetylornithine aminotransferase compare
AO353_27415 -0.7 -1.9 hypothetical protein compare
AO353_17615 -0.7 -2.6 hypothetical protein compare
AO353_14930 -0.7 -1.9 GntR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Threonine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Threonine across organisms