Experiment set6IT086 for Herbaspirillum seropedicae SmR1

Compare to:

Carbon source D-Glucose 20 mM

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS13890 +1.5 9.3 LuxR family transcriptional regulator compare
HSERO_RS02800 +1.4 1.9 hypothetical protein compare
HSERO_RS13885 +1.4 6.7 histidine kinase compare
HSERO_RS14985 +1.3 7.1 transcriptional regulator compare
HSERO_RS10285 +1.3 4.5 flagellar hook-length control protein compare
HSERO_RS10145 +1.3 8.4 flagellar biosynthesis protein FlhA compare
HSERO_RS10305 +1.3 10.2 flagellar motor switch protein FliG compare
HSERO_RS16640 +1.2 4.0 ABC transporter substrate-binding protein compare
HSERO_RS21735 +1.2 3.6 hypothetical protein compare
HSERO_RS14975 +1.2 3.9 flagellar motor protein MotA compare
HSERO_RS10140 +1.2 7.9 flagellar biosynthesis protein FlhB compare
HSERO_RS10215 +1.1 6.6 flagellar P-ring protein FlgI compare
HSERO_RS10150 +1.1 7.7 flagellar biosynthesis regulator FlhF compare
HSERO_RS10260 +1.0 7.1 flagellar biosynthesis protein FliP compare
HSERO_RS10310 +1.0 5.9 flagellar M-ring protein FliF compare
HSERO_RS05150 +1.0 4.7 galactonate dehydratase compare
HSERO_RS20265 +1.0 1.0 hypothetical protein compare
HSERO_RS17105 +1.0 1.9 DNA polymerase III subunit epsilon compare
HSERO_RS10175 +1.0 7.1 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10255 +0.9 2.9 flagellar biosynthesis protein FliQ compare
HSERO_RS09205 +0.9 2.2 glutathione ABC transporter permease compare
HSERO_RS10250 +0.9 6.2 flagellar biosynthesis protein FliR compare
HSERO_RS05855 +0.9 5.2 flagellar motor protein MotA compare
HSERO_RS10200 +0.9 5.2 flagellar basal body rod protein FlgF compare
HSERO_RS10340 +0.9 3.2 flagellar biosynthesis protein FliS compare
HSERO_RS10290 +0.9 3.1 flagellar biosynthesis protein FliJ compare
HSERO_RS03700 +0.9 2.0 type VI secretion protein compare
HSERO_RS10275 +0.8 4.5 flagellar motor switch protein FliM compare
HSERO_RS17855 +0.8 2.2 DEAD/DEAH box helicase compare
HSERO_RS10295 +0.8 4.5 ATP synthase compare
HSERO_RS10315 +0.8 4.3 flagellar hook-basal body protein FliE compare
HSERO_RS10190 +0.8 3.0 flagellar basal body rod modification protein FlgD compare
HSERO_RS05325 +0.8 1.5 ribose ABC transporter permease compare
HSERO_RS00895 +0.8 2.4 L-proline ABC transporter, ATPase component 1 (from data) compare
HSERO_RS10185 +0.8 4.1 flagellar basal body rod protein FlgC compare
HSERO_RS13640 +0.8 1.9 hypothetical protein compare
HSERO_RS10280 +0.8 1.8 flagellar basal body protein FliL compare
HSERO_RS02700 +0.8 1.3 hypothetical protein compare
HSERO_RS10265 +0.8 2.1 flagellar biosynthesis protein FliO compare
HSERO_RS07470 +0.8 1.1 ketosteroid isomerase compare
HSERO_RS09910 +0.8 1.4 integration host factor subunit alpha compare
HSERO_RS12475 +0.7 1.7 histidine kinase compare
HSERO_RS10685 +0.7 2.6 serine endopeptidase compare
HSERO_RS11165 +0.7 1.8 arylesterase compare
HSERO_RS23435 +0.7 1.6 MerR family transcriptional regulator compare
HSERO_RS14970 +0.7 3.3 flagellar motor protein MotB compare
HSERO_RS21745 +0.7 2.6 5'-methylthioadenosine nucleosidase compare
HSERO_RS11460 +0.7 1.2 universal stress protein compare
HSERO_RS16490 +0.7 5.7 FimV compare
HSERO_RS22740 +0.7 3.4 ABC transporter permease compare
HSERO_RS06420 +0.7 1.2 hypothetical protein compare
HSERO_RS23765 +0.7 2.1 hypothetical protein compare
HSERO_RS10765 +0.7 3.0 hypothetical protein compare
HSERO_RS03995 +0.7 1.5 hypothetical protein compare
HSERO_RS17290 +0.7 2.8 chromate transporter compare
HSERO_RS21135 +0.7 3.3 transcriptional regulator compare
HSERO_RS10180 +0.7 1.6 flagellar biosynthesis protein FlgB compare
HSERO_RS01915 +0.7 4.0 membrane protein compare
HSERO_RS02770 +0.7 1.5 hypothetical protein compare
HSERO_RS10325 +0.7 1.6 flagellar biosynthesis protein compare
HSERO_RS07240 +0.7 1.8 membrane protein compare
HSERO_RS13335 +0.7 1.2 hypothetical protein compare
HSERO_RS04525 +0.7 2.5 lysozyme compare
HSERO_RS10970 +0.7 1.8 NfeD family protein compare
HSERO_RS19950 +0.7 2.2 Rieske (2Fe-2S) protein compare
HSERO_RS09420 +0.7 4.0 HAD family hydrolase compare
HSERO_RS14330 +0.7 1.2 ferredoxin compare
HSERO_RS20250 +0.7 0.6 large conductance mechanosensitive channel protein MscL compare
HSERO_RS05505 +0.7 2.6 transcriptional regulator compare
HSERO_RS14260 +0.7 1.1 ferredoxin compare
HSERO_RS15900 +0.7 2.4 hypothetical protein compare
HSERO_RS09750 +0.6 2.9 8-amino-7-oxononanoate synthase compare
HSERO_RS10195 +0.6 4.4 flagellar hook protein FlgE compare
HSERO_RS23450 +0.6 2.3 hypothetical protein compare
HSERO_RS06330 +0.6 2.3 transcriptional regulator compare
HSERO_RS01185 +0.6 2.3 amino acid ABC transporter compare
HSERO_RS04970 +0.6 2.7 dioxygenase compare
HSERO_RS18180 +0.6 3.2 nitrate reductase compare
HSERO_RS23455 +0.6 1.0 methylcrotonoyl-CoA carboxylase compare
HSERO_RS10225 +0.6 3.5 flagellar hook protein FlgK compare
HSERO_RS10730 +0.6 2.4 hypothetical protein compare
HSERO_RS01090 +0.6 1.4 hypothetical protein compare
HSERO_RS08530 +0.6 2.5 glycine/betaine ABC transporter permease compare
HSERO_RS18890 +0.6 2.5 hypothetical protein compare
HSERO_RS20035 +0.6 1.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS16305 +0.6 1.9 hypothetical protein compare
HSERO_RS04165 +0.6 0.9 hypothetical protein compare
HSERO_RS01550 +0.6 2.5 hypothetical protein compare
HSERO_RS11565 +0.6 2.0 cytochrome C oxidase subunit III compare
HSERO_RS04005 +0.6 2.3 type III secretion protein compare
HSERO_RS04015 +0.6 2.3 flagellar biosynthesis/type III secretory pathway protein compare
HSERO_RS10160 +0.6 3.1 flagellar biosynthesis sigma factor compare
HSERO_RS19575 +0.6 1.2 50S ribosomal protein L25 compare
HSERO_RS05560 +0.6 3.0 ABC transporter substrate-binding protein compare
HSERO_RS06940 +0.6 1.2 23S rRNA methyltransferase compare
HSERO_RS22025 +0.6 2.5 aromatic amino acid aminotransferase compare
HSERO_RS23610 +0.6 1.7 urease subunit gamma compare
HSERO_RS12010 +0.6 1.4 hemerythrin compare
HSERO_RS23005 +0.6 1.6 glutathione S-transferase compare
HSERO_RS06270 +0.5 2.1 hemolysin protein compare
HSERO_RS07660 +0.5 2.0 RND transporter compare
HSERO_RS15130 +0.5 2.7 MaoC family dehydratase compare
HSERO_RS21075 +0.5 3.4 asparagine synthase compare
HSERO_RS18550 +0.5 0.9 excinuclease ATPase subunit compare
HSERO_RS14325 +0.5 2.8 hypothetical protein compare
HSERO_RS21475 +0.5 0.8 recombinase XerC compare
HSERO_RS08565 +0.5 3.7 RNA helicase compare
HSERO_RS14170 +0.5 3.1 thioredoxin compare
HSERO_RS14620 +0.5 1.8 chemotaxis protein compare
HSERO_RS02815 +0.5 1.4 HxlR family transcriptional regulator compare
HSERO_RS19965 +0.5 3.2 phosphodiesterase compare
HSERO_RS03920 +0.5 1.4 hypothetical protein compare
HSERO_RS09990 +0.5 0.8 glycosyl transferase compare
HSERO_RS06070 +0.5 2.2 methyl-accepting chemotaxis protein compare
HSERO_RS03925 +0.5 1.4 hypothetical protein compare
HSERO_RS10205 +0.5 2.9 flagellar basal body rod protein FlgG compare
HSERO_RS09800 +0.5 1.5 hypothetical protein compare
HSERO_RS15580 +0.5 1.8 tRNA-binding protein compare
HSERO_RS04460 +0.5 3.0 tail sheath protein compare
HSERO_RS12555 +0.5 1.9 major facilitator transporter compare
HSERO_RS17285 +0.5 0.9 chromate transporter compare
HSERO_RS20090 +0.5 1.5 gluconolactonase compare
HSERO_RS14850 +0.5 2.6 glycosyltransferase compare
HSERO_RS20955 +0.5 2.8 thiol:disulfide interchange protein compare
HSERO_RS07435 +0.5 1.7 formate dehydrogenase accessory protein FdhD compare
HSERO_RS09980 +0.5 3.6 acetylase compare
HSERO_RS05180 +0.5 1.8 sugar ABC transporter permease compare
HSERO_RS07675 +0.5 2.2 multidrug DMT transporter compare
HSERO_RS21175 +0.5 1.7 hypothetical protein compare
HSERO_RS16890 +0.5 1.3 hypothetical protein compare
HSERO_RS00805 +0.5 0.8 preprotein translocase subunit SecB compare
HSERO_RS10355 +0.5 2.8 flagellin compare
HSERO_RS23095 +0.5 1.3 histidine kinase compare
HSERO_RS01920 +0.5 2.0 50S ribosomal protein L11 methyltransferase compare
HSERO_RS12625 +0.5 1.5 sulfonate ABC transporter ATP-binding lipoprotein compare
HSERO_RS15250 +0.5 1.8 hypothetical protein compare
HSERO_RS15350 +0.5 1.3 membrane protein compare
HSERO_RS13590 +0.5 1.7 D-galactose-1-dehydrogenase compare
HSERO_RS03865 +0.5 1.6 hypothetical protein compare
HSERO_RS10230 +0.5 2.6 flagellar hook-filament junction protein compare
HSERO_RS23100 +0.5 1.9 hypothetical protein compare
HSERO_RS03575 +0.5 0.9 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS22830 +0.5 2.9 glutathione S-transferase compare
HSERO_RS14575 +0.5 2.2 hypothetical protein compare
HSERO_RS22095 +0.5 0.9 hypothetical protein compare
HSERO_RS06365 +0.5 1.7 hypothetical protein compare
HSERO_RS08470 +0.5 2.2 chemotaxis protein compare
HSERO_RS03145 +0.5 3.0 poly(A) polymerase compare
HSERO_RS12185 +0.5 2.4 methyl-accepting chemotaxis transducer transmembrane protein compare
HSERO_RS12950 +0.5 2.3 calcium-binding protein compare
HSERO_RS20170 +0.5 2.5 hypothetical protein compare
HSERO_RS04270 +0.5 1.0 membrane protein compare
HSERO_RS21470 +0.5 1.7 hypothetical protein compare
HSERO_RS18895 +0.5 1.7 alkane 1-monooxygenase compare
HSERO_RS17270 +0.5 3.3 glucan biosynthesis protein D compare
HSERO_RS05440 +0.5 0.6 hypothetical protein compare
HSERO_RS15140 +0.5 2.6 chemotaxis protein CheY compare
HSERO_RS13580 +0.5 2.4 LysR family transcriptional regulator compare
HSERO_RS01470 +0.5 3.1 LysR family transcriptional regulator compare
HSERO_RS18585 +0.5 2.4 hypothetical protein compare
HSERO_RS09185 +0.5 1.8 isoaspartyl peptidase compare
HSERO_RS22315 +0.4 1.6 hypothetical protein compare
HSERO_RS03840 +0.4 1.1 hypothetical protein compare
HSERO_RS02575 +0.4 1.3 diguanylate cyclase compare
HSERO_RS13005 +0.4 1.5 histidine kinase compare
HSERO_RS18935 +0.4 1.9 LysR family transcriptional regulator compare
HSERO_RS19940 +0.4 1.8 ABC transporter substrate-binding protein compare
HSERO_RS11400 +0.4 1.1 exonuclease compare
HSERO_RS12400 +0.4 1.8 signal peptidase compare
HSERO_RS15620 +0.4 1.4 glycosyl transferase family 1 compare
HSERO_RS18245 +0.4 1.6 lipase compare
HSERO_RS18560 +0.4 1.8 hypothetical protein compare
HSERO_RS14305 +0.4 0.7 chemotaxis protein CheY compare
HSERO_RS00160 +0.4 1.5 hypothetical protein compare
HSERO_RS20825 +0.4 1.2 ABC transporter permease compare
HSERO_RS13715 +0.4 1.1 hypothetical protein compare
HSERO_RS11515 +0.4 1.8 histidine kinase compare
HSERO_RS06240 +0.4 1.9 hypothetical protein compare
HSERO_RS14210 +0.4 2.4 homocitrate synthase compare
HSERO_RS00810 +0.4 0.8 glutaredoxin compare
HSERO_RS01590 +0.4 1.7 antibiotic biosynthesis monooxygenase compare
HSERO_RS06150 +0.4 2.9 cell division protein ZapA compare
HSERO_RS19310 +0.4 2.0 membrane protein compare
HSERO_RS06755 +0.4 2.4 acyl-CoA dehydrogenase compare
HSERO_RS14445 +0.4 2.2 histidine kinase compare
HSERO_RS01985 +0.4 1.9 energy transducer TonB compare
HSERO_RS07620 +0.4 2.4 hypothetical protein compare
HSERO_RS22810 +0.4 1.6 alcohol dehydrogenase compare
HSERO_RS02545 +0.4 0.7 membrane protein compare
HSERO_RS22015 +0.4 0.9 DNA-binding protein compare
HSERO_RS00320 +0.4 1.7 peptide ABC transporter ATP-binding protein compare
HSERO_RS14680 +0.4 1.8 histidine kinase compare
HSERO_RS09355 +0.4 1.4 hypothetical protein compare
HSERO_RS18740 +0.4 0.6 hypothetical protein compare
HSERO_RS17010 +0.4 1.9 ABC transporter for D-sorbitol/xylitol, permease component 2 (from data) compare
HSERO_RS16785 +0.4 1.4 aldo/keto reductase compare
HSERO_RS18220 +0.4 2.1 pilus assembly protein compare
HSERO_RS09360 +0.4 1.5 lysine transporter LysE compare
HSERO_RS02580 +0.4 1.2 hypothetical protein compare
HSERO_RS19970 +0.4 1.4 branched-chain amino acid ABC transporter compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in carbon source experiments

For carbon source D-Glucose across organisms