Experiment set6IT086 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -10.4 -6.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -6.5 -4.5 NUDIX domain-containing protein compare
ABZR87_RS08695 -5.8 -8.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS08630 -5.5 -8.8 dihydroorotase compare
ABZR87_RS07355 -4.9 -7.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS00970 -4.9 -2.5 molecular chaperone DnaJ compare
ABZR87_RS05100 -4.7 -5.8 RNA polymerase-binding protein DksA compare
ABZR87_RS08750 -4.6 -6.2 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS02545 -4.5 -3.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS07735 -4.2 -5.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS02445 -4.2 -5.5 Sec-independent protein translocase protein TatB compare
ABZR87_RS11170 -4.2 -1.0 FixH family protein compare
ABZR87_RS10120 -4.2 -1.7 YceD family protein compare
ABZR87_RS02535 -4.2 -5.7 phospholipid-binding protein MlaC compare
ABZR87_RS04975 -4.1 -4.1 peptide deformylase compare
ABZR87_RS02160 -4.1 -6.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02440 -3.8 -9.3 twin-arginine translocase subunit TatC compare
ABZR87_RS04865 -3.8 -5.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS03075 -3.8 -11.8 AGE family epimerase/isomerase compare
ABZR87_RS14910 -3.8 -2.7 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS01685 -3.7 -6.9 histone H1-like DNA-binding protein compare
ABZR87_RS09895 -3.7 -1.5 DUF1841 family protein compare
ABZR87_RS08625 -3.7 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS22910 -3.6 -2.3 6-phosphogluconolactonase compare
ABZR87_RS14535 -3.6 -5.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS08795 -3.6 -4.3 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS02550 -3.6 -6.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS13645 -3.5 -0.8 hypothetical protein compare
ABZR87_RS13400 -3.5 -0.8 hypothetical protein compare
ABZR87_RS01855 -3.5 -11.0 A24 family peptidase compare
ABZR87_RS03440 -3.5 -5.8 type II secretion system protein GspM compare
ABZR87_RS01035 -3.5 -6.0 histidine utilization repressor compare
ABZR87_RS01615 -3.5 -1.1 RNB domain-containing ribonuclease compare
ABZR87_RS02540 -3.4 -6.1 VacJ family lipoprotein compare
ABZR87_RS08645 -3.4 -0.8 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS08530 -3.3 -2.4 Flp family type IVb pilin compare
ABZR87_RS02565 -3.3 -6.0 glutamate synthase subunit beta compare
ABZR87_RS02555 -3.3 -7.4 ABC transporter ATP-binding protein compare
ABZR87_RS02850 -3.3 -2.3 elongation factor Tu compare
ABZR87_RS00435 -3.2 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13250 -3.2 -2.2 phosphoserine phosphatase SerB compare
ABZR87_RS07290 -3.2 -2.1 DUF6691 family protein compare
ABZR87_RS01275 -3.2 -5.2 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS05305 -3.1 -10.2 TetR family transcriptional regulator compare
ABZR87_RS19010 -3.1 -2.6 acyloxyacyl hydrolase compare
ABZR87_RS12785 -3.0 -3.6 endopeptidase La compare
ABZR87_RS23295 -3.0 -1.0 hypothetical protein compare
ABZR87_RS14605 -3.0 -11.6 aconitate hydratase AcnA compare
ABZR87_RS09505 -3.0 -7.3 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS14490 -3.0 -9.8 tryptophan synthase subunit alpha compare
ABZR87_RS13790 -2.9 -9.6 chorismate synthase compare
ABZR87_RS02145 -2.9 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14540 -2.9 -8.8 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS03460 -2.9 -10.3 type II secretion system inner membrane protein GspF compare
ABZR87_RS10980 -2.9 -1.0 tRNA-Leu compare
ABZR87_RS16735 -2.9 -14.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS06350 -2.8 -11.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS16540 -2.8 -1.7 MarR family transcriptional regulator compare
ABZR87_RS05590 -2.8 -1.9 orotate phosphoribosyltransferase compare
ABZR87_RS07035 -2.8 -5.9 RNase adapter RapZ compare
ABZR87_RS04940 -2.8 -3.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02640 -2.8 -12.7 diaminopimelate decarboxylase compare
ABZR87_RS03450 -2.7 -13.0 type II secretion system secretin GspD compare
ABZR87_RS07380 -2.7 -14.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS06845 -2.7 -6.4 heme o synthase compare
ABZR87_RS03425 -2.6 -5.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS02380 -2.6 -9.8 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS09710 -2.6 -2.8 tRNA-Arg compare
ABZR87_RS07665 -2.6 -8.6 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS09465 -2.5 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS07625 -2.5 -1.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS10195 -2.5 -4.7 signal peptidase I compare
ABZR87_RS03430 -2.5 -8.8 type II secretion system minor pseudopilin GspK compare
ABZR87_RS20555 -2.5 -3.7 helix-turn-helix transcriptional regulator compare
ABZR87_RS02590 -2.5 -7.8 3-dehydroquinate synthase compare
ABZR87_RS10080 -2.5 -7.6 GTP 3',8-cyclase MoaA compare
ABZR87_RS03455 -2.5 -8.9 type II secretion system ATPase GspE compare
ABZR87_RS04270 -2.5 -3.7 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS08990 -2.4 -2.9 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS00875 -2.4 -4.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS14965 -2.4 -3.3 DUF3619 family protein compare
ABZR87_RS17650 -2.4 -4.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02385 -2.4 -4.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS16960 -2.4 -3.9 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS08700 -2.4 -4.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06760 -2.3 -4.4 glutaredoxin 3 compare
ABZR87_RS21375 -2.3 -1.4 DUF6566 family protein compare
ABZR87_RS13705 -2.3 -0.9 integration host factor subunit alpha compare
ABZR87_RS04995 -2.3 -2.1 DNA topoisomerase III compare
ABZR87_RS03435 -2.3 -4.7 type II secretion system protein GspL compare
ABZR87_RS03565 -2.3 -7.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06400 -2.3 -5.1 response regulator transcription factor compare
ABZR87_RS13285 -2.3 -8.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS09500 -2.2 -2.7 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS12960 -2.2 -1.2 head completion/stabilization protein compare
ABZR87_RS02485 -2.2 -0.7 MarC family protein compare
ABZR87_RS12150 -2.2 -2.6 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS07760 -2.2 -1.5 HlyC/CorC family transporter compare
ABZR87_RS11650 -2.2 -4.0 ribosomal protein S18-alanine N-acetyltransferase compare
ABZR87_RS14530 -2.2 -5.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS10170 -2.2 -3.4 RseA family anti-sigma factor compare
ABZR87_RS11010 -2.1 -2.2 oxidative damage protection protein compare
ABZR87_RS04945 -2.1 -1.9 DUF4390 domain-containing protein compare
ABZR87_RS10870 -2.1 -4.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS21245 -2.1 -0.8 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS13475 -2.1 -3.5 PAS domain S-box protein compare
ABZR87_RS15255 -2.1 -5.8 ribonuclease PH compare
ABZR87_RS08985 -2.1 -4.8 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS14500 -2.1 -7.7 tryptophan synthase subunit beta compare
ABZR87_RS22970 -2.0 -7.4 cystathionine gamma-synthase family protein compare
ABZR87_RS02570 -2.0 -13.2 glutamate synthase-related protein compare
ABZR87_RS11245 -2.0 -3.7 translational GTPase TypA compare
ABZR87_RS11470 -2.0 -2.8 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS03410 -2.0 -2.7 type II secretion system major pseudopilin GspG compare
ABZR87_RS08980 -2.0 -2.1 cell envelope integrity protein TolA compare
ABZR87_RS00340 -2.0 -1.8 50S ribosomal protein L33 compare
ABZR87_RS07005 -2.0 -1.4 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS03415 -2.0 -6.8 GspH/FimT family pseudopilin compare
ABZR87_RS10175 -1.9 -4.0 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS14890 -1.9 -0.8 preprotein translocase subunit SecG compare
ABZR87_RS05570 -1.9 -9.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS20875 -1.9 -5.1 LysR family transcriptional regulator compare
ABZR87_RS07470 -1.9 -8.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08970 -1.9 -3.9 protein TolQ compare
ABZR87_RS12120 -1.9 -1.1 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS20440 -1.9 -0.6 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS04640 -1.8 -1.6 hypothetical protein compare
ABZR87_RS14080 -1.8 -2.9 phosphate signaling complex protein PhoU compare
ABZR87_RS16820 -1.8 -4.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS15485 -1.8 -3.7 glycosyltransferase family 2 protein compare
ABZR87_RS11790 -1.8 -1.6 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS16055 -1.8 -5.0 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS09445 -1.8 -7.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS07510 -1.8 -3.4 LysR family transcriptional regulator compare
ABZR87_RS02595 -1.8 -6.7 shikimate kinase compare
ABZR87_RS03445 -1.7 -5.4 type II secretion system protein N compare
ABZR87_RS22920 -1.7 -2.6 phosphogluconate dehydratase compare
ABZR87_RS11330 -1.7 -1.9 transcriptional repressor LexA compare
ABZR87_RS02375 -1.7 -5.4 cytochrome c1 compare
ABZR87_RS05645 -1.7 -1.2 SDR family oxidoreductase compare
ABZR87_RS10610 -1.7 -0.8 inositol monophosphatase family protein compare
ABZR87_RS08070 -1.7 -1.4 pyruvate kinase compare
ABZR87_RS02655 -1.7 -7.5 anti-sigma factor compare
ABZR87_RS08540 -1.7 -2.2 TPM domain-containing protein compare
ABZR87_RS18140 -1.7 -2.0 type III secretion system export apparatus subunit SctR compare
ABZR87_RS11435 -1.7 -2.8 Mth938-like domain-containing protein compare
ABZR87_RS05115 -1.7 -3.1 ATP-dependent protease subunit HslV compare
ABZR87_RS15305 -1.7 -1.7 pyroglutamyl-peptidase I compare
ABZR87_RS01980 -1.7 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS08720 -1.7 -7.8 HAD family hydrolase compare
ABZR87_RS06300 -1.7 -3.0 SDR family oxidoreductase compare
ABZR87_RS00935 -1.7 -5.8 polynucleotide adenylyltransferase PcnB compare
ABZR87_RS01780 -1.7 -0.7 MarC family protein compare
ABZR87_RS09515 -1.6 -0.8 cysteine synthase CysM compare
ABZR87_RS01645 -1.6 -2.8 type II 3-dehydroquinate dehydratase compare
ABZR87_RS09635 -1.6 -0.9 ribosome small subunit-dependent GTPase A compare
ABZR87_RS16125 -1.6 -4.4 heme biosynthesis protein HemY compare
ABZR87_RS07620 -1.6 -1.6 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS17730 -1.6 -3.8 GntR family transcriptional regulator compare
ABZR87_RS14505 -1.6 -2.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS11420 -1.6 -1.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS01640 -1.6 -1.6 TlpA disulfide reductase family protein compare
ABZR87_RS13050 -1.6 -0.6 GpE family phage tail protein compare
ABZR87_RS04725 -1.6 -0.8 universal stress protein compare
ABZR87_RS11495 -1.6 -1.0 NADPH-dependent FMN reductase compare
ABZR87_RS07360 -1.6 -5.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS05580 -1.6 -1.9 diaminopimelate epimerase compare
ABZR87_RS02325 -1.5 -3.0 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS06745 -1.5 -5.2 S41 family peptidase compare
ABZR87_RS14970 -1.5 -2.6 DUF3106 domain-containing protein compare
ABZR87_RS19205 -1.5 -2.1 hypothetical protein compare
ABZR87_RS09625 -1.5 -7.2 CobD/CbiB family protein compare
ABZR87_RS11195 -1.5 -6.2 pseudouridine synthase compare
ABZR87_RS01675 -1.5 -2.0 carbohydrate kinase family protein compare
ABZR87_RS08015 -1.5 -5.3 cyclic pyranopterin monophosphate synthase MoaC compare
ABZR87_RS17145 -1.5 -7.4 AMP nucleosidase compare
ABZR87_RS01090 -1.5 -7.0 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR87_RS06840 -1.5 -3.6 COX15/CtaA family protein compare
ABZR87_RS16660 -1.5 -3.5 helix-turn-helix domain-containing protein compare
ABZR87_RS13805 -1.5 -3.6 CBS domain-containing protein compare
ABZR87_RS20880 -1.5 -4.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS11940 -1.5 -2.4 SsrA-binding protein SmpB compare
ABZR87_RS17235 -1.5 -3.6 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS04990 -1.5 -1.6 thioredoxin family protein compare
ABZR87_RS01745 -1.5 -2.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS17185 -1.5 -5.6 amidohydrolase compare
ABZR87_RS12800 -1.4 -4.4 trigger factor compare
ABZR87_RS13315 -1.4 -6.4 RluA family pseudouridine synthase compare
ABZR87_RS02220 -1.4 -5.9 redox-regulated ATPase YchF compare
ABZR87_RS00325 -1.4 -1.3 peptidylprolyl isomerase compare
ABZR87_RS06495 -1.4 -0.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS10400 -1.4 -1.0 hypothetical protein compare
ABZR87_RS09650 -1.4 -3.8 molybdopterin adenylyltransferase compare
ABZR87_RS02155 -1.4 -2.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS22830 -1.4 -1.3 Crp/Fnr family transcriptional regulator compare
ABZR87_RS13300 -1.4 -4.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS05200 -1.4 -6.9 homoserine O-acetyltransferase compare
ABZR87_RS11125 -1.4 -4.1 cell division protein ZapE compare
ABZR87_RS03330 -1.4 -4.1 MarR family transcriptional regulator compare
ABZR87_RS11015 -1.4 -3.7 amino-acid N-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in in planta experiments

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms