Experiment set6IT085 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_07515 -4.6 -3.2 transporter compare
AO353_02070 -4.5 -6.8 prephenate dehydratase compare
AO353_20695 -4.4 -7.3 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -4.3 -4.1 3-isopropylmalate dehydratase compare
AO353_22800 -4.1 -3.9 sulfite reductase compare
AO353_12145 -4.0 -4.7 nitrogen regulation protein NR(I) compare
AO353_20635 -3.9 -12.6 3-isopropylmalate dehydrogenase compare
AO353_20665 -3.9 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07230 -3.9 -16.5 anthranilate synthase compare
AO353_12520 -3.8 -13.1 glutamate synthase compare
AO353_12090 -3.8 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_15500 -3.8 -12.8 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
AO353_12085 -3.7 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12515 -3.6 -22.4 glutamate synthase compare
AO353_07220 -3.6 -8.6 anthranilate synthase compare
AO353_13165 -3.6 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_10710 -3.6 -4.2 tryptophan synthase subunit beta compare
AO353_15505 -3.6 -13.5 LysR family transcriptional regulator conserved
AO353_12365 -3.6 -4.8 phosphoribosyl-AMP cyclohydrolase compare
AO353_12075 -3.5 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_05115 -3.5 -13.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -3.5 -10.0 imidazoleglycerol-phosphate dehydratase compare
AO353_05110 -3.3 -12.5 histidinol dehydrogenase compare
AO353_08185 -3.3 -11.4 methionine biosynthesis protein MetW compare
AO353_20620 -3.3 -8.7 isopropylmalate isomerase compare
AO353_09285 -3.3 -12.8 reactive intermediate/imine deaminase compare
AO353_14505 -3.3 -13.0 ketol-acid reductoisomerase compare
AO353_00310 -3.3 -10.5 transaldolase compare
AO353_08345 -3.2 -10.2 dihydroxy-acid dehydratase compare
AO353_21595 -3.2 -9.4 serine/threonine protein kinase compare
AO353_10670 -3.1 -9.0 shikimate dehydrogenase compare
AO353_09915 -3.1 -7.5 long-chain acyl-CoA thioester hydrolase compare
AO353_08180 -3.0 -14.3 homoserine O-acetyltransferase compare
AO353_07215 -3.0 -9.2 anthranilate phosphoribosyltransferase compare
AO353_10030 -3.0 -12.1 pyruvate carboxylase subunit A compare
AO353_12360 -3.0 -10.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14500 -3.0 -7.9 acetolactate synthase 3 regulatory subunit compare
AO353_08475 -3.0 -10.5 phosphoserine phosphatase compare
AO353_07505 -3.0 -10.6 dethiobiotin synthetase compare
AO353_08685 -3.0 -10.3 N-acetylglutamate synthase compare
AO353_12500 -3.0 -2.0 shikimate kinase compare
AO353_04105 -2.9 -9.6 argininosuccinate synthase compare
AO353_02710 -2.9 -11.9 (p)ppGpp synthetase compare
AO353_09240 -2.9 -3.9 acetylglutamate kinase compare
AO353_05420 -2.9 -2.0 peptide chain release factor 3 compare
AO353_08780 -2.9 -8.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07520 -2.8 -14.8 8-amino-7-oxononanoate synthase compare
AO353_00825 -2.8 -5.3 porin compare
AO353_09000 -2.8 -6.4 argininosuccinate lyase compare
AO353_04155 -2.8 -13.0 ornithine carbamoyltransferase compare
AO353_07155 -2.8 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14495 -2.8 -11.9 acetolactate synthase 3 catalytic subunit compare
AO353_08045 -2.8 -16.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_03020 -2.7 -9.5 arginine N-succinyltransferase compare
AO353_07525 -2.7 -14.4 biotin synthase compare
AO353_10035 -2.7 -8.2 LysR family transcriptional regulator compare
AO353_14220 -2.7 -2.6 ribosomal large subunit pseudouridine synthase D compare
AO353_10025 -2.7 -15.5 pyruvate carboxylase subunit B compare
AO353_07510 -2.6 -10.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07210 -2.6 -5.1 indole-3-glycerol-phosphate synthase compare
AO353_15925 -2.6 -11.5 2-isopropylmalate synthase compare
AO353_08015 -2.5 -8.8 5,10-methylenetetrahydrofolate reductase compare
AO353_14400 -2.5 -4.1 Fis family transcriptional regulator compare
AO353_20540 -2.5 -8.5 aromatic amino acid aminotransferase compare
AO353_19090 -2.4 -3.2 MarR family transcriptional regulator compare
AO353_03590 -2.4 -4.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_19250 -2.4 -3.5 molybdenum cofactor guanylyltransferase compare
AO353_14115 -2.3 -6.7 gamma-glutamyl kinase compare
AO353_20175 -2.3 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_03795 -2.3 -5.5 fumarate hydratase compare
AO353_08165 -2.2 -3.7 pyrroline-5-carboxylate reductase compare
AO353_16940 -2.2 -5.8 deoxycytidine triphosphate deaminase compare
AO353_03290 -2.2 -2.7 peptide deformylase compare
AO353_07105 -2.1 -2.1 biotin--protein ligase compare
AO353_00490 -2.1 -2.4 PasA protein compare
AO353_12105 -2.0 -7.1 peptidase S41 compare
AO353_14775 -2.0 -6.9 hypothetical protein compare
AO353_06155 -2.0 -9.2 copper-transporting ATPase compare
AO353_06495 -2.0 -4.9 gamma-glutamyl phosphate reductase compare
AO353_14420 -1.8 -4.5 molecular chaperone DnaK compare
AO353_03360 -1.8 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_09250 -1.8 -3.6 exodeoxyribonuclease III compare
AO353_01375 -1.8 -5.4 phosphate acyltransferase compare
AO353_02685 -1.7 -3.9 phosphoribosylglycinamide formyltransferase compare
AO353_14990 -1.7 -2.8 hypothetical protein compare
AO353_03580 -1.7 -3.5 ATP-dependent DNA helicase RuvB compare
AO353_28425 -1.7 -3.5 TetR family transcriptional regulator compare
AO353_12240 -1.7 -5.9 histidine utilization repressor compare
AO353_12420 -1.7 -4.2 predicted FeS cluster maintenance protein (from data) compare
AO353_11770 -1.7 -2.5 molecular chaperone Hsp33 compare
AO353_01220 -1.7 -3.0 hypothetical protein compare
AO353_19060 -1.6 -4.9 CysB family transcriptional regulator compare
AO353_02250 -1.6 -3.6 chorismate synthase compare
AO353_27650 -1.6 -5.0 cell division protein FtsK compare
AO353_02975 -1.6 -3.2 aspartate kinase compare
AO353_13140 -1.6 -5.7 tRNA dimethylallyltransferase compare
AO353_16450 -1.6 -8.9 protein-PII uridylyltransferase compare
AO353_08880 -1.6 -2.7 exopolyphosphatase compare
AO353_10705 -1.6 -4.4 tryptophan synthase subunit alpha compare
AO353_15410 -1.6 -2.2 hypothetical protein compare
AO353_08885 -1.5 -10.5 polyphosphate kinase compare
AO353_21630 -1.5 -2.5 precorrin-4 C11-methyltransferase compare
AO353_02720 -1.5 -5.8 cysteine synthase compare
AO353_06050 -1.5 -6.2 exodeoxyribonuclease V subunit gamma compare
AO353_17005 -1.5 -3.5 hypothetical protein compare
AO353_04220 -1.5 -4.6 chemotaxis protein CheY compare
AO353_01190 -1.5 -2.2 hypothetical protein compare
AO353_09890 -1.4 -5.0 phosphate ABC transporter ATP-binding protein compare
AO353_07315 -1.4 -2.8 rRNA methyltransferase compare
AO353_14595 -1.4 -6.7 carbonate dehydratase compare
AO353_02715 -1.4 -4.4 23S rRNA methyltransferase compare
AO353_06745 -1.4 -2.9 zinc-binding protein compare
AO353_15185 -1.4 -4.4 ATPase compare
AO353_05690 -1.4 -3.2 SsrA-binding protein compare
AO353_03585 -1.3 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_05105 -1.3 -6.8 histidinol-phosphate aminotransferase compare
AO353_07355 -1.3 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_14370 -1.3 -5.6 glucose-6-phosphate isomerase compare
AO353_18540 -1.3 -2.5 pseudouridine synthase compare
AO353_11165 -1.2 -6.2 hypothetical protein compare
AO353_04565 -1.2 -5.1 nucleoid-associated protein compare
AO353_13200 -1.2 -7.4 exoribonuclease R compare
AO353_06320 -1.2 -3.9 AsnC family transcriptional regulator compare
AO353_18960 -1.2 -1.6 terminase compare
AO353_04365 -1.2 -3.9 recombinase XerD compare
AO353_20840 -1.2 -1.7 ribose pyranase compare
AO353_21655 -1.2 -1.8 cobalamin biosynthesis protein CobW compare
AO353_15645 -1.2 -2.5 hypothetical protein compare
AO353_19280 -1.1 -2.0 hypothetical protein compare
AO353_24595 -1.1 -2.7 hypothetical protein compare
AO353_13640 -1.1 -3.4 histidine kinase compare
AO353_06045 -1.1 -5.0 exodeoxyribonuclease V subunit beta compare
AO353_27435 -1.1 -2.5 hypothetical protein compare
AO353_24340 -1.1 -2.0 TetR family transcriptional regulator compare
AO353_13610 -1.1 -2.2 precorrin isomerase compare
AO353_02000 -1.1 -2.8 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_26115 -1.1 -2.0 hypothetical protein compare
AO353_14930 -1.1 -2.0 GntR family transcriptional regulator compare
AO353_09030 -1.1 -1.0 iron donor protein CyaY compare
AO353_23400 -1.0 -2.2 hypothetical protein compare
AO353_03420 -1.0 -3.2 phosphogluconate dehydratase compare
AO353_02300 -1.0 -1.7 MarR family transcriptional regulator compare
AO353_22150 -1.0 -2.1 iron transporter compare
AO353_18780 -1.0 -4.3 cobyrinic acid a,c-diamide synthase compare
AO353_10455 -1.0 -1.7 tRNA modification GTPase MnmE compare
AO353_23440 -1.0 -2.0 hypothetical protein compare
AO353_08470 -1.0 -2.5 RNA pyrophosphohydrolase compare
AO353_12150 -1.0 -2.5 histidine kinase compare
AO353_09905 -1.0 -5.3 phosphate-binding protein compare
AO353_07075 -1.0 -3.2 elongation factor Tu compare
AO353_11455 -1.0 -2.2 hypothetical protein compare
AO353_17365 -1.0 -2.1 hypothetical protein compare
AO353_16040 -1.0 -2.0 hypothetical protein compare
AO353_03615 -1.0 -2.1 cold-shock protein compare
AO353_15725 -1.0 -2.9 hypothetical protein compare
AO353_05010 -0.9 -2.0 HopJ type III effector protein compare
AO353_19360 -0.9 -1.8 peroxiredoxin compare
AO353_02625 -0.9 -6.4 cobalamin biosynthesis protein CobD compare
AO353_21625 -0.9 -1.1 Fe/S biogenesis protein NfuA compare
AO353_19755 -0.9 -3.2 cytosine deaminase compare
AO353_06355 -0.9 -2.3 thiamine-phosphate pyrophosphorylase compare
AO353_09720 -0.9 -1.5 hypothetical protein compare
AO353_05080 -0.9 -5.7 sulfate adenylyltransferase compare
AO353_06455 -0.9 -2.3 D-alanyl-D-alanine carboxypeptidase compare
AO353_13605 -0.9 -5.2 oxidoreductase compare
AO353_05140 -0.9 -5.0 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_09045 -0.9 -1.7 hypothetical protein compare
AO353_24130 -0.9 -1.8 hypothetical protein compare
AO353_02600 -0.9 -1.7 alpha-ribazole phosphatase compare
AO353_02885 -0.9 -2.2 flagellar biosynthesis protein FlgN compare
AO353_13590 -0.9 -3.3 cobalt-precorrin-6X reductase compare
AO353_12510 -0.9 -5.7 cell division protein compare
AO353_13245 -0.9 -4.6 hypothetical protein compare
AO353_04090 -0.9 -1.9 leucyl-tRNA synthetase compare
AO353_20585 -0.9 -1.9 TetR family transcriptional regulator compare
AO353_10985 -0.9 -1.5 hypothetical protein compare
AO353_19295 -0.9 -1.6 hypothetical protein compare
AO353_11850 -0.9 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_26645 -0.8 -2.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_09155 -0.8 -4.5 amino acid dehydrogenase compare
AO353_10505 -0.8 -1.6 hypothetical protein compare
AO353_05075 -0.8 -4.7 adenylylsulfate kinase compare
AO353_03775 -0.8 -4.0 pyruvate kinase compare
AO353_03630 -0.8 -5.6 porin compare
AO353_13615 -0.8 -6.1 precorrin-2 C20-methyltransferase compare
AO353_02605 -0.8 -3.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_14030 -0.8 -5.2 ABC transporter ATP-binding protein compare
AO353_23945 -0.8 -1.7 hypothetical protein compare
AO353_21660 -0.8 -5.2 cobalamin biosynthesis protein CobN compare
AO353_04355 -0.8 -1.5 homoserine dehydrogenase compare
AO353_05125 -0.8 -2.7 BolA family transcriptional regulator compare
AO353_22930 -0.8 -2.3 hypothetical protein compare
AO353_13080 -0.8 -4.3 thiosulfate sulfurtransferase compare
AO353_02640 -0.8 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_03830 -0.8 -1.9 antibiotic biosynthesis monooxygenase compare
AO353_20510 -0.8 -1.5 amidase compare
AO353_08350 -0.8 -3.8 hypothetical protein compare
AO353_28935 -0.8 -2.3 ATPase compare
AO353_16605 -0.8 -5.4 protein-L-isoaspartate O-methyltransferase compare
AO353_02060 -0.8 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Serine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Serine across organisms