Experiment set6IT085 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Serine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
AO353_04190 +1.4 4.3 glycerol-3-phosphate dehydrogenase compare
AO353_21830 +1.4 12.5 chemotaxis protein CheY compare
AO353_02735 +1.4 12.7 chemotaxis protein CheY compare
AO353_09745 +1.3 2.8 hypothetical protein compare
AO353_27000 +1.1 2.1 hypothetical protein compare
AO353_03275 +0.9 2.1 LysR family transcriptional regulator compare
AO353_05415 +0.9 2.7 hypothetical protein compare
AO353_19340 +0.8 7.1 amino acid ABC transporter substrate-binding protein compare
AO353_10990 +0.8 5.7 glutamate:protein symporter compare
AO353_09705 +0.8 2.1 hypothetical protein compare
AO353_22195 +0.8 1.8 metal ABC transporter permease compare
AO353_17885 +0.8 1.0 hypothetical protein compare
AO353_28320 +0.8 2.9 aminopeptidase compare
AO353_23405 +0.8 1.7 hypothetical protein compare
AO353_12580 +0.8 1.0 type II secretory protein PulK compare
AO353_09945 +0.8 3.7 LysR family transcriptional regulator compare
AO353_14485 +0.7 1.7 pseudouridine synthase compare
AO353_13715 +0.7 2.9 translation initiation factor Sui1 compare
AO353_14915 +0.7 1.9 (2Fe-2S)-binding protein compare
AO353_02425 +0.7 3.8 spermidine/putrescine ABC transporter ATP-binding protein compare
AO353_12570 +0.7 2.9 type II secretion system protein GspI compare
AO353_26450 +0.7 2.4 hypothetical protein compare
AO353_04810 +0.7 1.6 hypothetical protein compare
AO353_06540 +0.7 2.0 hypothetical protein compare
AO353_02280 +0.7 1.5 DNA mismatch repair protein MutS compare
AO353_20700 +0.7 3.2 oxidoreductase compare
AO353_13160 +0.7 1.9 membrane protease HflC compare
AO353_23155 +0.6 2.5 IclR family transcriptional regulator compare
AO353_11945 +0.6 0.8 4-oxalocrotonate tautomerase compare
AO353_24415 +0.6 1.8 glutamine ABC transporter ATP-binding protein compare
AO353_20100 +0.6 2.8 hypothetical protein compare
AO353_07645 +0.6 1.4 sarcosine oxidase subunit gamma compare
AO353_23410 +0.6 1.5 hypothetical protein compare
AO353_11155 +0.6 5.4 thioesterase compare
AO353_24425 +0.6 1.7 amino acid ABC transporter permease compare
AO353_26055 +0.6 1.7 hypothetical protein compare
AO353_27155 +0.6 1.6 hypothetical protein compare
AO353_08980 +0.6 2.1 heme biosynthesis operon protein HemX compare
AO353_11940 +0.6 1.5 hypothetical protein compare
AO353_27215 +0.6 1.7 hypothetical protein compare
AO353_22520 +0.6 1.6 hypothetical protein compare
AO353_01915 +0.6 1.3 GlcG protein compare
AO353_26525 +0.6 1.0 hypothetical protein compare
AO353_13575 +0.6 1.9 hypothetical protein compare
AO353_28015 +0.6 1.8 hypothetical protein compare
AO353_03815 +0.6 1.4 heme utilization protein compare
AO353_01055 +0.6 5.0 AraC family transcriptional regulator compare
AO353_27535 +0.6 2.0 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_02995 +0.6 3.5 succinylglutamate desuccinylase compare
AO353_12790 +0.6 1.2 hypothetical protein compare
AO353_03210 +0.6 1.9 GNAT family acetyltransferase compare
AO353_03805 +0.6 1.9 C4-dicarboxylate ABC transporter compare
AO353_14570 +0.6 2.6 chromosome partitioning protein compare
AO353_00635 +0.6 1.7 hypothetical protein compare
AO353_16615 +0.6 4.6 RNA polymerase sigma factor RpoS compare
AO353_22700 +0.6 1.7 LexA family transcriptional regulator compare
AO353_24440 +0.6 1.1 reactive intermediate/imine deaminase compare
AO353_07610 +0.6 1.1 hypothetical protein compare
AO353_01135 +0.5 1.0 enoyl-CoA hydratase compare
AO353_19610 +0.5 1.9 hypothetical protein compare
AO353_00065 +0.5 2.4 oxidoreductase compare
AO353_00760 +0.5 1.5 hypothetical protein compare
AO353_05535 +0.5 1.9 tRNA-Thr compare
AO353_05005 +0.5 2.0 hypothetical protein compare
AO353_28210 +0.5 1.5 2-haloalkanoic acid dehalogenase compare
AO353_05875 +0.5 3.1 plasmid stabilization protein compare
AO353_16120 +0.5 4.4 D-alanine and L-alanine transporter (from data) compare
AO353_07755 +0.5 2.6 betainyl-CoA thiolase (EC 3.1.2.-) (from data) compare
AO353_26275 +0.5 2.3 hypothetical protein compare
AO353_20415 +0.5 1.9 hypothetical protein compare
AO353_09660 +0.5 0.7 hypothetical protein compare
AO353_18040 +0.5 1.8 fimbrial chaperone protein compare
AO353_00205 +0.5 2.3 head protein compare
AO353_07850 +0.5 1.8 ATP-dependent RNA helicase compare
AO353_26990 +0.5 2.0 hypothetical protein compare
AO353_18505 +0.5 0.6 translation initiation factor 2 compare
AO353_08620 +0.5 0.9 hypothetical protein compare
AO353_17100 +0.5 1.1 hypothetical protein compare
AO353_16025 +0.5 1.9 hypothetical protein compare
AO353_12835 +0.5 1.6 hypothetical protein compare
AO353_28385 +0.5 1.9 twitching motility protein PilT compare
AO353_22025 +0.5 0.8 iron-sulfur cluster repair di-iron protein compare
AO353_18765 +0.5 1.8 hypothetical protein compare
AO353_10500 +0.5 1.6 acetylornithine aminotransferase compare
AO353_23325 +0.5 1.9 hypothetical protein compare
AO353_23370 +0.5 1.8 cytochrome C compare
AO353_21030 +0.5 1.8 hypothetical protein compare
AO353_03035 +0.5 2.4 AraC family transcriptional regulator compare
AO353_03130 +0.5 1.3 hypothetical protein compare
AO353_02180 +0.5 2.8 hypothetical protein compare
AO353_28750 +0.5 2.1 LysR family transcriptional regulator compare
AO353_23590 +0.5 1.0 ArsR family transcriptional regulator compare
AO353_01065 +0.5 3.4 acetyl-CoA acetyltransferase compare
AO353_13360 +0.5 2.2 ABC transporter ATP-binding protein compare
AO353_12765 +0.5 1.1 transcriptional regulator compare
AO353_24980 +0.5 2.6 formate dehydrogenase accessory protein FdhE compare
AO353_23670 +0.5 1.6 glutathione S-transferase compare
AO353_14445 +0.5 2.6 ABC transporter permease compare
AO353_16355 +0.4 2.3 TetR family transcriptional regulator compare
AO353_10755 +0.4 1.9 hypothetical protein compare
AO353_28835 +0.4 2.5 hypothetical protein compare
AO353_17075 +0.4 2.0 short-chain dehydrogenase compare
AO353_25425 +0.4 2.6 ABC transporter permease compare
AO353_22645 +0.4 1.2 hypothetical protein compare
AO353_16740 +0.4 1.6 phage tail protein compare
AO353_25260 +0.4 1.3 hypothetical protein compare
AO353_01060 +0.4 2.4 3-ketoacyl-ACP reductase compare
AO353_11840 +0.4 1.8 haloacid dehalogenase compare
AO353_20120 +0.4 1.0 hypothetical protein compare
AO353_03410 +0.4 0.8 chemotaxis protein CheY compare
AO353_28985 +0.4 1.8 hypothetical protein compare
AO353_28960 +0.4 0.9 Fis family transcriptional regulator compare
AO353_07980 +0.4 2.4 cytochrome C compare
AO353_01615 +0.4 1.2 pilus assembly protein PilA compare
AO353_22890 +0.4 2.6 secretion protein HlyD compare
AO353_25700 +0.4 0.7 hypothetical protein compare
AO353_13110 +0.4 2.7 putative transporter, required for glycine utilization (from data) compare
AO353_16155 +0.4 1.2 antibiotic biosynthesis monooxygenase compare
AO353_10730 +0.4 1.1 hypothetical protein compare
AO353_07905 +0.4 1.4 hypothetical protein compare
AO353_17640 +0.4 0.8 serine peptidase compare
AO353_25050 +0.4 1.8 AraC family transcriptional regulator compare
AO353_02345 +0.4 1.5 purine permease compare
AO353_13920 +0.4 1.3 dihydroxyacetone kinase compare
AO353_27905 +0.4 2.1 N-formylglutamate amidohydrolase compare
AO353_18500 +0.4 1.0 chemotaxis protein CheY compare
AO353_23880 +0.4 1.3 ATPase compare
AO353_09560 +0.4 0.8 type VI secretion protein compare
AO353_10630 +0.4 1.7 16S rRNA methyltransferase compare
AO353_27430 +0.4 1.3 hypothetical protein compare
AO353_24185 +0.4 1.8 serine/threonine protein phosphatase compare
AO353_21750 +0.4 1.4 peptidylprolyl isomerase compare
AO353_27375 +0.4 1.5 DNA packaging protein compare
AO353_17915 +0.4 2.3 hypothetical protein compare
AO353_25640 +0.4 1.4 AsnC family transcriptional regulator compare
AO353_05395 +0.4 2.5 peptide ABC transporter permease compare
AO353_05060 +0.4 1.5 pressure-regulated protein compare
AO353_28780 +0.4 1.6 hypothetical protein compare
AO353_00400 +0.4 2.5 citrate-proton symporter compare
AO353_23860 +0.4 1.6 xanthine permease XanP compare
AO353_29180 +0.4 1.9 alpha/beta hydrolase compare
AO353_13420 +0.4 0.9 hypothetical protein compare
AO353_23220 +0.4 0.9 hypothetical protein compare
AO353_12585 +0.4 1.9 hypothetical protein compare
AO353_08395 +0.4 2.3 FAD-dependent oxidoreductase compare
AO353_21770 +0.4 1.2 3-hydroxybutyrate dehydrogenase compare
AO353_21445 +0.4 0.9 cation:proton antiporter compare
AO353_22035 +0.4 1.4 pyridoxine 5'-phosphate oxidase compare
AO353_22280 +0.4 1.1 hypothetical protein compare
AO353_29025 +0.4 1.7 LysR family transcriptional regulator compare
AO353_22215 +0.4 1.4 hypothetical protein compare
AO353_14955 +0.4 1.7 hypothetical protein compare
AO353_18790 +0.4 1.1 histidine kinase compare
AO353_12650 +0.4 0.7 hypothetical protein compare
AO353_13155 +0.4 1.6 hypothetical protein compare
AO353_21175 +0.4 1.4 hypothetical protein compare
AO353_24685 +0.4 1.4 hypothetical protein compare
AO353_18130 +0.4 1.0 hypothetical protein compare
AO353_26815 +0.4 1.3 transcriptional regulator compare
AO353_14160 +0.4 1.4 general secretion pathway protein GspH compare
AO353_00385 +0.4 1.5 glycerophosphodiester phosphodiesterase compare
AO353_23385 +0.4 2.1 trans-2-enoyl-CoA reductase compare
AO353_29165 +0.4 1.0 fructose-bisphosphate aldolase compare
AO353_00150 +0.4 1.4 hypothetical protein compare
AO353_13085 +0.4 1.6 histidine kinase compare
AO353_03175 +0.4 1.8 hypothetical protein compare
AO353_10890 +0.4 1.9 methionine ABC transporter ATP-binding protein compare
AO353_21355 +0.4 0.8 xylose isomerase compare
AO353_15270 +0.4 1.2 phospholipid-binding protein compare
AO353_01070 +0.4 3.3 poly(R)-hydroxyalkanoic acid synthase compare
AO353_00025 +0.4 1.9 phenazine biosynthesis protein PhzF compare
AO353_22665 +0.4 1.8 AsnC family transcriptional regulator compare
AO353_26755 +0.4 1.5 hypothetical protein compare
AO353_19930 +0.4 2.3 ATPase compare
AO353_22115 +0.4 1.5 peptidylprolyl isomerase compare
AO353_25430 +0.4 1.9 ABC transporter permease compare
AO353_22955 +0.4 1.0 tRNA hydroxylase compare
AO353_20925 +0.4 0.9 hypothetical protein compare
AO353_25785 +0.4 1.8 adhesin compare
AO353_02420 +0.4 2.5 ABC transporter permease compare
AO353_04730 +0.4 2.0 alginate O-acetyltransferase compare
AO353_25320 +0.4 0.8 phosphoribosyl-dephospho-CoA transferase compare
AO353_23510 +0.4 1.4 transcriptional regulator compare
AO353_01305 +0.4 2.5 hypothetical protein compare
AO353_22740 +0.4 1.8 sterol desaturase compare
AO353_08855 +0.4 1.3 GntR family transcriptional regulator compare
AO353_18170 +0.4 2.5 aspartyl beta-hydroxylase compare
AO353_25935 +0.4 2.0 hypothetical protein compare
AO353_08130 +0.4 1.3 uracil phosphoribosyltransferase compare
AO353_00510 +0.4 1.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_18560 +0.4 1.0 class I peptide chain release factor compare
AO353_15050 +0.4 1.0 nitrate transport permease nrtB compare
AO353_11720 +0.4 0.9 taurine transporter ATP-binding subunit compare
AO353_02275 +0.4 1.3 hypothetical protein compare
AO353_20060 +0.4 1.3 hypothetical protein compare
AO353_20810 +0.4 0.8 hypothetical protein compare
AO353_02920 +0.4 1.3 serine recombinase compare
AO353_27585 +0.4 1.0 DNA repair protein compare
AO353_21455 +0.4 0.4 cation:proton antiporter compare
AO353_00955 +0.4 0.9 cytotoxic translational repressor of toxin-antitoxin stability system compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Serine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Serine across organisms