Experiment set6IT085 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS05100 -7.0 -8.9 RNA polymerase-binding protein DksA compare
ABZR87_RS21795 -6.7 -4.6 NUDIX domain-containing protein compare
ABZR87_RS14115 -6.2 -3.1 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS08695 -5.2 -16.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00970 -5.0 -3.1 molecular chaperone DnaJ compare
ABZR87_RS08630 -4.9 -8.7 dihydroorotase compare
ABZR87_RS02550 -4.7 -4.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS02545 -4.6 -3.2 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS08795 -4.4 -3.1 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS07355 -4.4 -7.2 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS02535 -4.3 -5.1 phospholipid-binding protein MlaC compare
ABZR87_RS04865 -4.2 -5.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS08750 -4.1 -6.9 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS07735 -4.0 -5.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS02555 -3.7 -6.7 ABC transporter ATP-binding protein compare
ABZR87_RS02540 -3.6 -5.6 VacJ family lipoprotein compare
ABZR87_RS09505 -3.6 -6.3 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS07665 -3.6 -11.7 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS03075 -3.5 -11.8 AGE family epimerase/isomerase compare
ABZR87_RS13790 -3.5 -10.4 chorismate synthase compare
ABZR87_RS11245 -3.5 -4.1 translational GTPase TypA compare
ABZR87_RS08645 -3.4 -1.0 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS04190 -3.4 -1.6 hypothetical protein compare
ABZR87_RS00435 -3.4 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS02640 -3.4 -13.2 diaminopimelate decarboxylase compare
ABZR87_RS01675 -3.4 -3.3 carbohydrate kinase family protein compare
ABZR87_RS02075 -3.4 -1.6 23S ribosomal RNA compare
ABZR87_RS01855 -3.4 -9.2 A24 family peptidase compare
ABZR87_RS14965 -3.3 -3.9 DUF3619 family protein compare
ABZR87_RS07380 -3.3 -16.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02590 -3.2 -10.2 3-dehydroquinate synthase compare
ABZR87_RS22910 -3.2 -2.4 6-phosphogluconolactonase compare
ABZR87_RS13175 -3.2 -1.7 tRNA-Leu compare
ABZR87_RS15505 -3.0 -0.8 DNA polymerase III subunit alpha compare
ABZR87_RS02440 -3.0 -10.8 twin-arginine translocase subunit TatC compare
ABZR87_RS14490 -3.0 -10.7 tryptophan synthase subunit alpha compare
ABZR87_RS05590 -3.0 -2.1 orotate phosphoribosyltransferase compare
ABZR87_RS08625 -3.0 -3.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS06845 -2.9 -9.5 heme o synthase compare
ABZR87_RS10980 -2.9 -1.2 tRNA-Leu compare
ABZR87_RS01450 -2.8 -3.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS12785 -2.8 -4.3 endopeptidase La compare
ABZR87_RS07035 -2.8 -7.0 RNase adapter RapZ compare
ABZR87_RS07625 -2.8 -1.9 Holliday junction branch migration protein RuvA compare
ABZR87_RS04945 -2.7 -2.6 DUF4390 domain-containing protein compare
ABZR87_RS02155 -2.7 -5.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS16860 -2.7 -2.4 response regulator compare
ABZR87_RS02160 -2.7 -5.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14535 -2.7 -5.3 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS04940 -2.7 -5.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS16735 -2.7 -15.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS03435 -2.6 -5.2 type II secretion system protein GspL compare
ABZR87_RS00875 -2.6 -5.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS02380 -2.6 -11.6 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS09465 -2.6 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS03430 -2.6 -8.5 type II secretion system minor pseudopilin GspK compare
ABZR87_RS14530 -2.6 -7.4 3-isopropylmalate dehydrogenase compare
ABZR87_RS22405 -2.6 -1.0 hypothetical protein compare
ABZR87_RS09500 -2.6 -4.5 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS12960 -2.5 -1.4 head completion/stabilization protein compare
ABZR87_RS14605 -2.5 -10.3 aconitate hydratase AcnA compare
ABZR87_RS01685 -2.5 -5.7 histone H1-like DNA-binding protein compare
ABZR87_RS11790 -2.5 -2.6 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS13705 -2.5 -1.2 integration host factor subunit alpha compare
ABZR87_RS14505 -2.4 -3.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS07290 -2.4 -1.8 DUF6691 family protein compare
ABZR87_RS02595 -2.4 -7.9 shikimate kinase compare
ABZR87_RS14665 -2.4 -1.2 histidine phosphatase family protein compare
ABZR87_RS02375 -2.4 -9.3 cytochrome c1 compare
ABZR87_RS06385 -2.4 -8.3 CHASE3 domain-containing protein compare
ABZR87_RS06400 -2.3 -4.6 response regulator transcription factor compare
ABZR87_RS16730 -2.3 -6.7 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS01035 -2.3 -5.4 histidine utilization repressor compare
ABZR87_RS02570 -2.3 -15.9 glutamate synthase-related protein compare
ABZR87_RS03450 -2.3 -12.5 type II secretion system secretin GspD compare
ABZR87_RS08985 -2.3 -5.4 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS03460 -2.3 -9.4 type II secretion system inner membrane protein GspF compare
ABZR87_RS08700 -2.3 -6.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS03410 -2.3 -6.2 type II secretion system major pseudopilin GspG compare
ABZR87_RS17650 -2.3 -6.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14540 -2.3 -5.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS04995 -2.2 -2.3 DNA topoisomerase III compare
ABZR87_RS02565 -2.2 -5.2 glutamate synthase subunit beta compare
ABZR87_RS08640 -2.2 -4.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS02145 -2.2 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS20880 -2.2 -6.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS01085 -2.2 -3.5 rhombosortase compare
ABZR87_RS02385 -2.2 -4.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS10170 -2.2 -2.8 RseA family anti-sigma factor compare
ABZR87_RS14500 -2.2 -9.6 tryptophan synthase subunit beta compare
ABZR87_RS11420 -2.1 -1.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS03455 -2.1 -9.4 type II secretion system ATPase GspE compare
ABZR87_RS20555 -2.1 -4.5 helix-turn-helix transcriptional regulator compare
ABZR87_RS06350 -2.1 -7.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS05570 -2.1 -8.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS13285 -2.1 -8.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02655 -2.1 -8.7 anti-sigma factor compare
ABZR87_RS19320 -2.0 -1.0 hypothetical protein compare
ABZR87_RS02445 -2.0 -2.7 Sec-independent protein translocase protein TatB compare
ABZR87_RS20500 -2.0 -1.0 hypothetical protein compare
ABZR87_RS05200 -2.0 -11.0 homoserine O-acetyltransferase compare
ABZR87_RS15715 -2.0 -6.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS10175 -2.0 -4.7 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02140 -2.0 -11.2 anthranilate synthase component I compare
ABZR87_RS08970 -2.0 -4.0 protein TolQ compare
ABZR87_RS09820 -2.0 -2.1 RidA family protein compare
ABZR87_RS02850 -1.9 -2.5 elongation factor Tu compare
ABZR87_RS22970 -1.9 -7.8 cystathionine gamma-synthase family protein compare
ABZR87_RS10610 -1.9 -1.1 inositol monophosphatase family protein compare
ABZR87_RS11010 -1.9 -2.5 oxidative damage protection protein compare
ABZR87_RS01225 -1.9 -2.2 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS11195 -1.9 -7.5 pseudouridine synthase compare
ABZR87_RS13475 -1.9 -3.8 PAS domain S-box protein compare
ABZR87_RS03415 -1.9 -7.3 GspH/FimT family pseudopilin compare
ABZR87_RS08990 -1.9 -3.8 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS07760 -1.9 -2.4 HlyC/CorC family transporter compare
ABZR87_RS01275 -1.9 -3.2 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS04105 -1.9 -3.3 ATP synthase subunit I compare
ABZR87_RS01700 -1.9 -1.4 DUF2147 domain-containing protein compare
ABZR87_RS03440 -1.9 -4.9 type II secretion system protein GspM compare
ABZR87_RS10120 -1.9 -1.4 YceD family protein compare
ABZR87_RS03425 -1.9 -5.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS09515 -1.8 -1.1 cysteine synthase CysM compare
ABZR87_RS10080 -1.8 -7.3 GTP 3',8-cyclase MoaA compare
ABZR87_RS02325 -1.8 -3.3 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS22520 -1.8 -2.3 ABATE domain-containing protein compare
ABZR87_RS21950 -1.8 -3.7 hypothetical protein compare
ABZR87_RS00745 -1.8 -1.6 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS04975 -1.8 -2.3 peptide deformylase compare
ABZR87_RS11815 -1.8 -8.3 [protein-PII] uridylyltransferase compare
ABZR87_RS00795 -1.8 -1.7 site-specific tyrosine recombinase XerD compare
ABZR87_RS01885 -1.8 -2.9 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS14675 -1.8 -0.7 glyoxalase compare
ABZR87_RS00325 -1.8 -1.7 peptidylprolyl isomerase compare
ABZR87_RS02220 -1.8 -7.5 redox-regulated ATPase YchF compare
ABZR87_RS16820 -1.7 -3.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13805 -1.7 -4.2 CBS domain-containing protein compare
ABZR87_RS07360 -1.7 -7.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS07965 -1.7 -4.6 recombinase RecA compare
ABZR87_RS06745 -1.7 -5.4 S41 family peptidase compare
ABZR87_RS22920 -1.7 -2.9 phosphogluconate dehydratase compare
ABZR87_RS13250 -1.7 -1.6 phosphoserine phosphatase SerB compare
ABZR87_RS12790 -1.7 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS10870 -1.7 -4.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS11435 -1.7 -2.7 Mth938-like domain-containing protein compare
ABZR87_RS05065 -1.6 -2.7 tyrosine recombinase XerC compare
ABZR87_RS06495 -1.6 -1.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS21245 -1.6 -0.9 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS03330 -1.6 -4.2 MarR family transcriptional regulator compare
ABZR87_RS10070 -1.6 -1.6 gephyrin-like molybdotransferase Glp compare
ABZR87_RS09460 -1.6 -3.4 prephenate dehydrogenase compare
ABZR87_RS14080 -1.6 -3.2 phosphate signaling complex protein PhoU compare
ABZR87_RS09445 -1.6 -6.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS15685 -1.6 -2.8 TIGR00730 family Rossman fold protein compare
ABZR87_RS12150 -1.6 -1.9 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS03785 -1.6 -2.6 c-type cytochrome compare
ABZR87_RS20875 -1.6 -5.1 LysR family transcriptional regulator compare
ABZR87_RS07470 -1.6 -7.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS10190 -1.6 -5.4 translation elongation factor 4 compare
ABZR87_RS16165 -1.6 -0.6 anti-sigma factor compare
ABZR87_RS06250 -1.6 -3.0 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS11990 -1.6 -1.9 hypothetical protein compare
ABZR87_RS07510 -1.6 -3.1 LysR family transcriptional regulator compare
ABZR87_RS21550 -1.6 -3.6 glyoxylate/hydroxypyruvate reductase A compare
ABZR87_RS12965 -1.6 -2.8 tail protein X compare
ABZR87_RS05350 -1.5 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS05305 -1.5 -3.7 TetR family transcriptional regulator compare
ABZR87_RS16080 -1.5 -1.9 P-II family nitrogen regulator compare
ABZR87_RS16960 -1.5 -3.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS06645 -1.5 -1.0 TlpA disulfide reductase family protein compare
ABZR87_RS16185 -1.5 -0.9 dCTP deaminase compare
ABZR87_RS19370 -1.5 -2.0 hypothetical protein compare
ABZR87_RS16660 -1.5 -2.9 helix-turn-helix domain-containing protein compare
ABZR87_RS10395 -1.5 -4.1 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS16125 -1.5 -7.2 heme biosynthesis protein HemY compare
ABZR87_RS01980 -1.5 -2.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS07620 -1.5 -1.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS14910 -1.5 -2.1 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS03565 -1.5 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS10620 -1.5 -2.4 serine O-acetyltransferase compare
ABZR87_RS10700 -1.5 -5.2 C40 family peptidase compare
ABZR87_RS17730 -1.5 -4.5 GntR family transcriptional regulator compare
ABZR87_RS10565 -1.5 -1.7 cupin domain-containing protein compare
ABZR87_RS17865 -1.5 -1.3 cation:proton antiporter compare
ABZR87_RS10400 -1.4 -1.4 hypothetical protein compare
ABZR87_RS04880 -1.4 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS07705 -1.4 -1.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS11125 -1.4 -4.1 cell division protein ZapE compare
ABZR87_RS08040 -1.4 -4.9 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS09000 -1.4 -4.8 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS10900 -1.4 -2.8 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS11440 -1.4 -4.7 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS02630 -1.4 -3.6 iron donor protein CyaY compare
ABZR87_RS09625 -1.4 -7.5 CobD/CbiB family protein compare
ABZR87_RS16170 -1.4 -1.0 argininosuccinate lyase compare
ABZR87_RS14680 -1.4 -1.1 SDR family oxidoreductase compare
ABZR87_RS11015 -1.4 -3.6 amino-acid N-acetyltransferase compare
ABZR87_RS04125 -1.4 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS10650 -1.4 -3.4 DNA-3-methyladenine glycosylase compare
ABZR87_RS07060 -1.4 -8.9 RNA polymerase factor sigma-54 compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in in planta experiments

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms