Experiment set6IT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2509 -3.7 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_309 -3.6 -2.3 FIG00957702: hypothetical protein compare
Pf6N2E2_4077 -3.4 -3.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3782 -3.3 -4.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3658 -3.3 -7.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4369 -3.1 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3261 -3.1 -5.1 hypothetical protein compare
Pf6N2E2_3198 -3.1 -2.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3842 -3.1 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4204 -3.0 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3659 -2.9 -6.5 Protein fixF compare
Pf6N2E2_2507 -2.9 -5.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3271 -2.9 -2.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3661 -2.8 -2.8 hypothetical protein compare
Pf6N2E2_3264 -2.8 -3.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3100 -2.8 -3.7 FIG00953063: hypothetical protein compare
Pf6N2E2_2506 -2.6 -11.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2124 -2.6 -2.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_127 -2.5 -2.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5316 -2.4 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3260 -2.3 -3.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3941 -2.3 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5876 -2.3 -4.6 Lipase (EC 3.1.1.3) compare
Pf6N2E2_3270 -2.3 -4.3 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3303 -2.3 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4160 -2.3 -1.5 Cytochrome c5 compare
Pf6N2E2_1886 -2.2 -1.7 hypothetical protein compare
Pf6N2E2_4159 -2.2 -4.3 Cytochrome c4 compare
Pf6N2E2_5527 -2.2 -2.5 Cold shock protein CspC compare
Pf6N2E2_5133 -2.2 -2.2 FIG00953980: hypothetical protein compare
Pf6N2E2_3252 -2.2 -6.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3461 -2.1 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2022 -2.0 -6.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_6140 -2.0 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5727 -2.0 -5.2 FIG00955360: hypothetical protein compare
Pf6N2E2_5103 -1.9 -1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2864 -1.9 -1.7 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_3134 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_4584 -1.9 -2.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2219 -1.9 -1.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5338 -1.8 -7.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4773 -1.8 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_4611 -1.8 -3.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4187 -1.8 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2277 -1.8 -2.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2311 -1.8 -5.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4803 -1.7 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3841 -1.7 -4.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2825 -1.7 -3.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_827 -1.7 -2.5 probable dioxygenase compare
Pf6N2E2_70 -1.7 -2.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3039 -1.7 -5.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5150 -1.7 -4.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2218 -1.7 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2126 -1.7 -5.1 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_453 -1.7 -3.1 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2201 -1.6 -3.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_2018 -1.6 -3.1 hypothetical protein compare
Pf6N2E2_2477 -1.6 -1.8 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_5156 -1.6 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3607 -1.6 -6.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2318 -1.6 -5.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1056 -1.5 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1116 -1.5 -1.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_5704 -1.5 -4.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5339 -1.5 -4.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2320 -1.5 -2.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2127 -1.5 -3.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_6064 -1.5 -4.4 2-methylaconitate isomerase compare
Pf6N2E2_5536 -1.5 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_423 -1.5 -2.4 Putative phosphatase YfbT compare
Pf6N2E2_5014 -1.5 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3062 -1.5 -3.6 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5068 -1.5 -7.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2510 -1.5 -3.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5950 -1.5 -3.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3480 -1.5 -1.6 Transcriptional regulator, ArsR family compare
Pf6N2E2_5703 -1.4 -3.6 outer membrane protein H1 compare
Pf6N2E2_3257 -1.4 -2.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3791 -1.4 -6.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3792 -1.4 -3.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3786 -1.4 -3.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_2474 -1.4 -5.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4181 -1.4 -1.1 Organic hydroperoxide resistance protein compare
Pf6N2E2_5862 -1.4 -1.8 Lipoprotein, putative compare
Pf6N2E2_2317 -1.4 -3.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1463 -1.3 -2.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_5571 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_5069 -1.3 -3.7 putative Cytochrome bd2, subunit II compare
Pf6N2E2_6029 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_3192 -1.3 -2.7 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3534 -1.3 -2.4 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_1082 -1.3 -2.3 CopG protein compare
Pf6N2E2_3611 -1.3 -1.2 HflC protein compare
Pf6N2E2_2440 -1.3 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_4661 -1.3 -2.1 KluA regulatory protein compare
Pf6N2E2_6058 -1.3 -3.0 FIG139976: hypothetical protein compare
Pf6N2E2_2508 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_5430 -1.2 -4.5 Transglycosylase, Slt family compare
Pf6N2E2_2261 -1.2 -4.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_445 -1.2 -3.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5794 -1.2 -1.6 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2310 -1.2 -5.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3253 -1.2 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3713 -1.2 -2.2 Acyl carrier protein compare
Pf6N2E2_3077 -1.2 -2.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_1450 -1.2 -1.3 FIG00960438: hypothetical protein compare
Pf6N2E2_3204 -1.2 -2.1 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2473 -1.2 -1.2 Major outer membrane lipoprotein I compare
Pf6N2E2_5160 -1.2 -0.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2428 -1.2 -2.3 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_2071 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_2588 -1.2 -2.6 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5741 -1.2 -3.4 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_460 -1.1 -2.0 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_3801 -1.1 -3.5 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf6N2E2_4954 -1.1 -4.2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) compare
Pf6N2E2_6063 -1.1 -4.8 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3942 -1.1 -4.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3373 -1.1 -1.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4362 -1.1 -2.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1673 -1.1 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2274 -1.1 -2.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3839 -1.1 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5444 -1.1 -2.6 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_2753 -1.1 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_2912 -1.1 -1.5 FIG00954094: hypothetical protein compare
Pf6N2E2_3908 -1.1 -3.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4612 -1.1 -2.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3258 -1.1 -2.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_962 -1.1 -1.1 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_833 -1.0 -2.7 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_2217 -1.0 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4084 -1.0 -3.9 Transcriptional regulator compare
Pf6N2E2_5714 -1.0 -1.7 Flavoprotein WrbA compare
Pf6N2E2_572 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_5780 -1.0 -5.2 Periplasmic protease compare
Pf6N2E2_55 -1.0 -1.7 Probable hydrolase compare
Pf6N2E2_4479 -1.0 -1.9 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_5081 -1.0 -2.8 hypothetical protein compare
Pf6N2E2_5910 -1.0 -2.1 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_648 -1.0 -1.2 General secretion pathway protein K compare
Pf6N2E2_1287 -1.0 -2.2 Mobile element protein compare
Pf6N2E2_2472 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_4352 -1.0 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5406 -1.0 -1.8 FIG00958224: hypothetical protein compare
Pf6N2E2_2363 -1.0 -2.2 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_4593 -1.0 -2.9 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf6N2E2_4359 -1.0 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4751 -1.0 -1.6 response regulator compare
Pf6N2E2_71 -1.0 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_1691 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_282 -1.0 -1.4 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4889 -1.0 -3.2 Putative transport protein compare
Pf6N2E2_3531 -1.0 -2.8 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_1723 -1.0 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_3835 -1.0 -2.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5531 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1323 -0.9 -2.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5006 -0.9 -4.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4206 -0.9 -1.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2469 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_5761 -0.9 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3282 -0.9 -1.4 FIG005080: Possible exported protein compare
Pf6N2E2_1804 -0.9 -2.5 Immune-responsive protein 1 compare
Pf6N2E2_3620 -0.9 -4.1 Epoxyqueuosine (oQ) reductase QueG compare
Pf6N2E2_5990 -0.9 -1.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2869 -0.9 -1.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4464 -0.9 -1.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_5419 -0.9 -1.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_5337 -0.9 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2375 -0.9 -1.4 Response regulator NasT compare
Pf6N2E2_2514 -0.9 -2.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2045 -0.9 -1.7 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_2047 -0.9 -1.7 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) compare
Pf6N2E2_2285 -0.9 -0.6 FIG00954079: hypothetical protein compare
Pf6N2E2_2 -0.9 -2.2 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_987 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_579 -0.9 -1.4 FIG00962753: hypothetical protein compare
Pf6N2E2_4703 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_4553 -0.9 -2.9 Nitrogen regulation protein NtrC compare
Pf6N2E2_1305 -0.9 -1.9 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_6095 -0.9 -2.2 tRNA-Asn-GTT compare
Pf6N2E2_5219 -0.9 -3.7 FIG140336: TPR domain protein compare
Pf6N2E2_2756 -0.9 -3.7 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2384 -0.9 -2.0 CmpX compare
Pf6N2E2_3328 -0.9 -1.3 transcriptional regulator compare
Pf6N2E2_6035 -0.9 -1.7 alpha/beta hydrolase fold compare
Pf6N2E2_868 -0.9 -1.4 Transcriptional regulator, HxlR family compare
Pf6N2E2_2822 -0.9 -4.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3589 -0.9 -1.8 Lysine decarboxylase family compare
Pf6N2E2_5155 -0.9 -1.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1660 -0.8 -1.6 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_4556 -0.8 -1.9 FIG00953078: hypothetical protein compare
Pf6N2E2_5584 -0.8 -1.6 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_199 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_1676 -0.8 -1.3 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_75 -0.8 -1.9 Colicin V production protein compare
Pf6N2E2_2264 -0.8 -1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_92 -0.8 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments