Experiment set6IT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_6045 +1.7 2.8 hypothetical protein compare
Pf6N2E2_4743 +1.6 2.3 hypothetical protein compare
Pf6N2E2_5766 +1.4 2.6 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_659 +1.3 1.9 Transcriptional regulatory protein ompR compare
Pf6N2E2_687 +1.2 2.2 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_942 +1.1 2.2 Mll6465 protein compare
Pf6N2E2_4541 +1.1 1.6 hypothetical protein compare
Pf6N2E2_1089 +1.1 2.5 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2420 +1.1 1.5 hypothetical protein compare
Pf6N2E2_600 +1.1 2.1 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_84 +1.0 2.1 hypothetical protein compare
Pf6N2E2_3770 +1.0 2.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_2176 +1.0 2.6 Amidases related to nicotinamidase compare
Pf6N2E2_1917 +1.0 2.6 hypothetical protein compare
Pf6N2E2_4305 +1.0 1.1 FIG00959590: hypothetical protein compare
Pf6N2E2_2010 +1.0 2.0 hypothetical protein compare
Pf6N2E2_719 +1.0 1.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_1774 +1.0 1.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2880 +1.0 2.8 FIG00959696: hypothetical protein compare
Pf6N2E2_1288 +0.9 1.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_5496 +0.9 3.1 FIG00953991: hypothetical protein compare
Pf6N2E2_1596 +0.9 1.4 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_1090 +0.9 3.6 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf6N2E2_1797 +0.9 2.3 Transcriptional regulator compare
Pf6N2E2_5207 +0.9 1.5 hypothetical protein compare
Pf6N2E2_956 +0.9 2.3 FIG01210404: hypothetical protein compare
Pf6N2E2_1783 +0.9 2.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2967 +0.9 1.4 Cold shock protein CspA compare
Pf6N2E2_1699 +0.9 1.6 FIG00955832: hypothetical protein compare
Pf6N2E2_3516 +0.9 1.7 Probable transmembrane protein compare
Pf6N2E2_6065 +0.8 1.4 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2055 +0.8 2.7 StbE replicon stabilization toxin compare
Pf6N2E2_5464 +0.8 3.3 Cytochrome c551 peroxidase (EC 1.11.1.5) compare
Pf6N2E2_4418 +0.8 1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1445 +0.8 1.7 Glutathione S-transferase compare
Pf6N2E2_350 +0.8 1.5 Gfa-like protein compare
Pf6N2E2_1749 +0.8 2.3 Cyn operon transcriptional activator compare
Pf6N2E2_3323 +0.8 2.3 hypothetical protein compare
Pf6N2E2_689 +0.8 2.0 FIG00956189: hypothetical protein compare
Pf6N2E2_3872 +0.8 1.9 hypothetical protein compare
Pf6N2E2_1859 +0.8 2.2 hypothetical protein compare
Pf6N2E2_959 +0.8 1.9 putative membrane protein compare
Pf6N2E2_3529 +0.8 1.8 Toxin A compare
Pf6N2E2_178 +0.8 0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_671 +0.8 1.9 2-methylaconitate racemase compare
Pf6N2E2_1959 +0.8 2.7 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_693 +0.7 1.8 hypothetical protein compare
Pf6N2E2_1821 +0.7 1.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2693 +0.7 1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_172 +0.7 1.7 FIG00953292: hypothetical protein compare
Pf6N2E2_2487 +0.7 0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_1404 +0.7 1.5 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_5237 +0.7 1.1 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_1153 +0.7 2.4 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_5500 +0.7 2.1 MoxR-like ATPases compare
Pf6N2E2_2121 +0.7 1.3 hypothetical protein compare
Pf6N2E2_5236 +0.7 1.2 hypothetical protein compare
Pf6N2E2_1548 +0.7 2.2 Lactoylglutathione lyase compare
Pf6N2E2_518 +0.7 3.3 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_4052 +0.7 1.2 FIG00955481: hypothetical protein compare
Pf6N2E2_3812 +0.7 2.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_4332 +0.7 2.3 hypothetical protein compare
Pf6N2E2_1032 +0.7 0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5785 +0.7 1.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_226 +0.7 1.7 2,3-dihydroxybiphenyl 1,2-dioxygenase compare
Pf6N2E2_2436 +0.7 2.3 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3947 +0.7 0.8 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_5898 +0.7 2.1 Integral membrane protein compare
Pf6N2E2_1281 +0.7 2.0 ATPase involved in DNA repair compare
Pf6N2E2_290 +0.7 2.1 Cold shock protein CspD compare
Pf6N2E2_2267 +0.7 1.6 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_1294 +0.7 1.3 Carbon starvation protein A compare
Pf6N2E2_3698 +0.7 1.7 Nicotinamidase family protein YcaC compare
Pf6N2E2_2489 +0.7 2.8 UPF0028 protein YchK compare
Pf6N2E2_1433 +0.7 1.7 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1435 +0.7 1.8 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1978 +0.7 2.7 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster compare
Pf6N2E2_119 +0.7 3.1 Glycosyltransferase compare
Pf6N2E2_5757 +0.7 2.1 hypothetical protein compare
Pf6N2E2_417 +0.7 1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_5637 +0.7 3.4 hypothetical protein compare
Pf6N2E2_841 +0.6 1.3 hypothetical protein compare
Pf6N2E2_6093 +0.6 1.3 hypothetical protein compare
Pf6N2E2_3875 +0.6 0.9 FIG00953324: hypothetical protein compare
Pf6N2E2_510 +0.6 4.3 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_2323 +0.6 1.6 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_2806 +0.6 2.1 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_3679 +0.6 2.9 Protein involved in catabolism of external DNA compare
Pf6N2E2_441 +0.6 1.6 FIG00958773: hypothetical protein compare
Pf6N2E2_3161 +0.6 1.4 hypothetical protein compare
Pf6N2E2_902 +0.6 1.7 hypothetical protein compare
Pf6N2E2_3638 +0.6 2.1 hypothetical protein compare
Pf6N2E2_1743 +0.6 1.7 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_98 +0.6 1.0 putative transmembrane protein compare
Pf6N2E2_5144 +0.6 1.6 Osmotically inducible protein OsmY compare
Pf6N2E2_3348 +0.6 2.6 hypothetical protein compare
Pf6N2E2_3828 +0.6 1.1 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_260 +0.6 1.7 Regulator of cell morphogenesis and NO signaling compare
Pf6N2E2_1862 +0.6 1.6 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf6N2E2_4526 +0.6 3.5 Phosphinothricin N-acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_6069 +0.6 1.8 FIG049111: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_5241 +0.6 1.3 Aminopeptidase N compare
Pf6N2E2_728 +0.6 1.7 Nitrate/nitrite transporter compare
Pf6N2E2_426 +0.6 2.8 Arsenate reductase (EC 1.20.4.1) compare
Pf6N2E2_6038 +0.6 1.4 hypothetical protein compare
Pf6N2E2_5972 +0.6 1.1 hypothetical protein compare
Pf6N2E2_4987 +0.6 0.9 MaoC-like domain protein compare
Pf6N2E2_5605 +0.6 2.0 FxsA protein compare
Pf6N2E2_778 +0.6 1.9 Probable lipoprotein signal peptide compare
Pf6N2E2_906 +0.6 1.4 ISPpu14, transposase Orf2 compare
Pf6N2E2_2324 +0.6 2.0 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4367 +0.6 0.7 hypothetical protein compare
Pf6N2E2_1598 +0.6 2.0 Nitrate reductase cytochrome c550-type subunit compare
Pf6N2E2_133 +0.6 1.0 hypothetical protein compare
Pf6N2E2_5246 +0.6 1.9 FIG00955938: hypothetical protein compare
Pf6N2E2_3969 +0.6 0.8 Membrane-fusion protein compare
Pf6N2E2_4615 +0.6 1.1 type IV pili signal transduction protein PilI compare
Pf6N2E2_2496 +0.6 1.1 FIG00956575: hypothetical protein compare
Pf6N2E2_2606 +0.6 2.3 hypothetical protein compare
Pf6N2E2_1747 +0.6 1.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_629 +0.6 1.8 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_639 +0.6 1.3 FIG01285020: hypothetical protein compare
Pf6N2E2_4459 +0.6 1.2 Transcriptional regulator, GntR family compare
Pf6N2E2_3003 +0.6 0.8 Bacteriophage protein GP46 compare
Pf6N2E2_4579 +0.6 1.1 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_280 +0.6 1.0 hypothetical protein compare
Pf6N2E2_5554 +0.6 1.9 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_1293 +0.6 1.1 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_640 +0.6 1.6 Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system compare
Pf6N2E2_5640 +0.6 1.3 FIG00955597: hypothetical protein compare
Pf6N2E2_1188 +0.6 1.9 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_413 +0.6 1.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2251 +0.6 1.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf6N2E2_1670 +0.6 2.0 conserved membrane protein compare
Pf6N2E2_1455 +0.6 2.4 Xylose ABC transporter, periplasmic xylose-binding protein XylF compare
Pf6N2E2_1012 +0.6 1.6 hypothetical protein compare
Pf6N2E2_6090 +0.5 0.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3984 +0.5 3.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4744 +0.5 2.8 putative iron-regulated membrane protein compare
Pf6N2E2_4962 +0.5 1.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_567 +0.5 2.2 Universal stress protein family 7 compare
Pf6N2E2_953 +0.5 1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_2223 +0.5 0.7 hypothetical protein compare
Pf6N2E2_2903 +0.5 2.1 Heme oxygenase HemO, associated with heme uptake compare
Pf6N2E2_156 +0.5 0.7 Carbon storage regulator compare
Pf6N2E2_714 +0.5 2.5 NnrS protein involved in response to NO compare
Pf6N2E2_1065 +0.5 1.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_922 +0.5 1.5 FIG00794167: hypothetical protein compare
Pf6N2E2_724 +0.5 0.9 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_3008 +0.5 1.6 FIG00954242: hypothetical protein compare
Pf6N2E2_304 +0.5 1.7 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_1377 +0.5 2.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2195 +0.5 1.6 cI compare
Pf6N2E2_3277 +0.5 1.2 FagA protein compare
Pf6N2E2_5049 +0.5 0.9 acetyltransferase, GNAT family compare
Pf6N2E2_5625 +0.5 2.1 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Pf6N2E2_1307 +0.5 2.7 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
Pf6N2E2_4973 +0.5 2.0 Inner membrane protein compare
Pf6N2E2_2193 +0.5 2.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_826 +0.5 2.0 ABC-type amino acid transport, signal transduction systems, periplasmic component/domain compare
Pf6N2E2_507 +0.5 2.3 Hydrogen cyanide synthase HcnB / Opine oxidase subunit A compare
Pf6N2E2_204 +0.5 0.6 hypothetical protein compare
Pf6N2E2_3775 +0.5 2.1 Transcriptional regulator PhaD compare
Pf6N2E2_1543 +0.5 1.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2986 +0.5 1.5 Transcriptional regulator, LuxR family compare
Pf6N2E2_1194 +0.5 2.3 hypothetical protein compare
Pf6N2E2_318 +0.5 2.0 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_5262 +0.5 1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_2850 +0.5 1.5 Transporter, LysE family compare
Pf6N2E2_766 +0.5 1.8 Fap protein with C39 domain compare
Pf6N2E2_4025 +0.5 0.9 hypothetical protein compare
Pf6N2E2_5804 +0.5 1.7 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Pf6N2E2_1575 +0.5 2.4 FIG00967398: hypothetical protein compare
Pf6N2E2_1633 +0.5 1.4 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_1251 +0.5 2.4 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf6N2E2_5405 +0.5 1.5 ABC transporter for D-Alanine, ATPase component (from data) compare
Pf6N2E2_1579 +0.5 1.7 hypothetical protein compare
Pf6N2E2_3206 +0.5 0.4 hypothetical protein compare
Pf6N2E2_1652 +0.5 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3441 +0.5 2.2 Gluconate transporter family protein compare
Pf6N2E2_3201 +0.5 1.4 Transcriptional regulator, MerR family compare
Pf6N2E2_1989 +0.5 1.5 hypothetical protein compare
Pf6N2E2_5243 +0.5 0.5 hypothetical protein compare
Pf6N2E2_2790 +0.5 1.1 Helix-turn-helix motif compare
Pf6N2E2_4139 +0.5 3.2 Integral membrane protein TerC compare
Pf6N2E2_1560 +0.5 1.3 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_1033 +0.5 1.7 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_1935 +0.5 1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_623 +0.5 0.7 FIG00954674: hypothetical protein compare
Pf6N2E2_1665 +0.5 1.8 hypothetical protein compare
Pf6N2E2_1246 +0.5 1.0 FIG00961372: hypothetical protein compare
Pf6N2E2_6049 +0.5 1.8 hydrolase, haloacid dehalogenase-like family compare
Pf6N2E2_927 +0.5 1.2 (AJ250023) putative polyketide synthase compare
Pf6N2E2_3320 +0.5 1.7 hypothetical protein compare
Pf6N2E2_2300 +0.5 0.7 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_2614 +0.5 3.1 C-methyltransferase compare
Pf6N2E2_2330 +0.5 2.3 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_4963 +0.5 0.8 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_5872 +0.5 3.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_3027 +0.5 0.7 Baseplate assembly protein V compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments