Experiment set6IT084 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Green bean; 6 days

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -6.7 -3.3 anthranilate synthase, component II compare
Psyr_4270 -4.7 -10.9 serine hydroxymethyltransferase compare
Psyr_1668 -4.7 -4.6 amidophosphoribosyltransferase compare
Psyr_1056 -4.6 -5.4 Poly(beta-D-mannuronate) lyase compare
Psyr_0576 -4.4 -4.3 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1985 -4.4 -9.8 3-isopropylmalate dehydrogenase compare
Psyr_4580 -4.3 -4.2 anthranilate phosphoribosyltransferase compare
Psyr_4609 -4.2 -16.9 anthranilate synthase, component I compare
Psyr_0473 -4.1 -8.2 Methionine biosynthesis MetW compare
Psyr_1613 -4.1 -5.5 septum site-determining protein MinC compare
Psyr_4340 -4.0 -8.5 phosphomethylpyrimidine kinase, putative compare
Psyr_4684 -4.0 -2.7 biotin synthesis protein BioC compare
Psyr_1983 -4.0 -6.5 3-isopropylmalate dehydratase, large subunit compare
Psyr_1269 -3.9 -4.6 phosphoribosylformylglycinamidine synthase compare
Psyr_4991 -3.8 -3.6 hypothetical protein compare
Psyr_0378 -3.7 -12.3 Glycosyl transferase, family 2 compare
Psyr_0219 -3.7 -9.8 phosphomannomutase compare
Psyr_3886 -3.7 -2.9 methionyl-tRNA synthetase compare
Psyr_0474 -3.7 -10.7 homoserine O-acetyltransferase compare
Psyr_4407 -3.7 -4.1 phosphoribosylamine--glycine ligase compare
Psyr_4740 -3.7 -7.7 thiazole-phosphate synthase compare
Psyr_0531 -3.7 -3.5 LmbE-like protein compare
Psyr_2612 -3.6 -2.9 syrP protein, putative compare
Psyr_0826 -3.6 -6.4 glucose-6-phosphate isomerase compare
Psyr_1669 -3.6 -11.3 O-succinylhomoserine sulfhydrylase compare
Psyr_0377 -3.5 -10.4 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0918 -3.5 -13.1 ABC transporter compare
Psyr_0529 -3.4 -6.8 Glycosyl transferase, group 1 compare
Psyr_4683 -3.3 -2.3 dethiobiotin synthase compare
Psyr_0915 -3.2 -10.5 NAD-dependent epimerase/dehydratase compare
Psyr_3008 -3.2 -5.8 Undecaprenyl-diphosphatase compare
Psyr_3958 -3.2 -12.8 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_1663 -3.1 -4.6 phosphoribosylanthranilate isomerase compare
Psyr_0917 -3.1 -10.1 ABC-2 compare
Psyr_1748 -3.0 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0167 -3.0 -3.4 hypothetical protein compare
Psyr_1350 -3.0 -5.1 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4369 -2.9 -7.2 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0014 -2.9 -4.1 lipid A biosynthesis acyltransferase compare
Psyr_1544 -2.8 -4.5 SirA-like protein compare
Psyr_4893 -2.8 -1.9 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4133 -2.7 -12.9 histidinol dehydrogenase compare
Psyr_4687 -2.7 -7.7 biotin synthase compare
Psyr_4897 -2.7 -3.6 imidazoleglycerol-phosphate dehydratase compare
Psyr_4894 -2.7 -5.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_1614 -2.7 -4.4 lipid A biosynthesis acyltransferase compare
Psyr_0951 -2.6 -2.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0936 -2.6 -11.1 Glycosyl transferase, group 1 compare
Psyr_4341 -2.6 -6.7 thiamine-phosphate diphosphorylase compare
Psyr_1410 -2.6 -4.6 Holliday junction DNA helicase RuvB compare
Psyr_4408 -2.6 -9.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0919 -2.6 -11.7 Chromosome segregation ATPase-like protein compare
Psyr_4852 -2.5 -5.0 D-3-phosphoglycerate dehydrogenase compare
Psyr_0848 -2.5 -9.1 ketol-acid reductoisomerase compare
Psyr_1121 -2.5 -2.5 6-phosphogluconolactonase compare
Psyr_1373 -2.5 -1.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0920 -2.4 -15.7 Glycosyl transferase, group 1 compare
Psyr_4134 -2.3 -8.6 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0469 -2.3 -8.6 dihydroxyacid dehydratase compare
Psyr_4362 -2.2 -3.2 Rare lipoprotein A compare
Psyr_4144 -2.2 -1.1 Protein of unknown function DUF1239 compare
Psyr_3179 -2.2 -4.0 DNA translocase FtsK compare
Psyr_5072 -2.2 -1.4 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_1197 -2.2 -5.0 type III secretion protein HrpE compare
Psyr_0914 -2.2 -10.0 Glycosyl transferase, group 1 compare
Psyr_2733 -2.2 -3.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_0923 -2.2 -5.8 hypothetical protein compare
Psyr_5132 -2.2 -3.0 Glucose-inhibited division protein A subfamily compare
Psyr_4132 -2.2 -6.4 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0033 -2.1 -1.5 tryptophan synthase, alpha chain compare
Psyr_0846 -2.1 -9.4 acetolactate synthase, large subunit compare
Psyr_1779 -2.1 -1.5 hypothetical protein compare
Psyr_0847 -2.1 -5.4 acetolactate synthase, small subunit compare
Psyr_4130 -2.1 -8.6 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1257 -2.1 -7.3 2-isopropylmalate synthase compare
Psyr_4136 -2.1 -2.9 BolA-like protein compare
Psyr_1395 -2.1 -5.4 virulence compare
Psyr_3691 -2.0 -5.4 conserved hypothetical protein compare
Psyr_4686 -2.0 -4.7 8-amino-7-oxononanoate synthase compare
Psyr_4896 -2.0 -4.9 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_2887 -2.0 -2.9 Endoribonuclease L-PSP compare
Psyr_0704 -2.0 -4.8 glutamate 5-kinase compare
Psyr_0549 -2.0 -2.4 Metallophosphoesterase compare
Psyr_2613 -1.9 -5.7 Cyclic peptide transporter compare
Psyr_2067 -1.9 -3.1 ABC transporter compare
Psyr_0534 -1.9 -10.8 membrane protein, putative compare
Psyr_2927 -1.9 -2.4 transcriptional regulator, TetR family compare
Psyr_2980 -1.9 -3.0 UDP-glucose pyrophosphorylase compare
Psyr_4194 -1.9 -4.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4882 -1.9 -6.4 protein translocase subunit secB compare
Psyr_0454 -1.9 -4.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4018 -1.9 -6.7 Formyltetrahydrofolate deformylase compare
Psyr_3637 -1.8 -9.2 Glycosyl transferase, family 4 compare
Psyr_4203 -1.8 -2.1 SsrA-binding protein compare
Psyr_0831 -1.8 -2.0 Two-component response regulator CbrB compare
Psyr_0268 -1.8 -2.9 DSBA oxidoreductase compare
Psyr_0976 -1.8 -5.0 Malate:quinone-oxidoreductase compare
Psyr_1247 -1.7 -2.6 conserved hypothetical protein compare
Psyr_1211 -1.7 -4.0 type III secretion protein HrpP compare
Psyr_1984 -1.7 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psyr_2221 -1.7 -2.1 sarcosine oxidase, gamma subunit compare
Psyr_1061 -1.7 -5.2 alginate biosynthesis protein Alg44 compare
Psyr_2245 -1.7 -1.3 conserved domain protein compare
Psyr_4940 -1.6 -3.0 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_4361 -1.6 -2.8 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_2071 -1.6 -1.9 outer membrane lipoprotein OprI compare
Psyr_0758 -1.6 -10.7 beta-fructofuranosidase compare
Psyr_1642 -1.6 -2.7 Maf-like protein compare
Psyr_3882 -1.6 -1.1 conserved hypothetical protein compare
Psyr_3636 -1.6 -7.6 Polysaccharide biosynthesis protein CapD compare
Psyr_4512 -1.6 -5.2 putative phage-related protein compare
Psyr_1419 -1.6 -2.8 preQ(0) biosynthesis protein QueC compare
Psyr_2982 -1.6 -3.8 conserved hypothetical protein compare
Psyr_0557 -1.6 -3.2 phosphoserine phosphatase compare
Psyr_1213 -1.6 -4.7 type III secretion cytoplasmic ATPase HrcN compare
Psyr_3281 -1.6 -2.5 Glycoside hydrolase, family 3, N-terminal compare
Psyr_5067 -1.5 -6.0 conserved hypothetical protein compare
Psyr_4091 -1.5 -3.1 8-oxo-dGTPase compare
Psyr_4019 -1.5 -2.4 H-NS family protein MvaT compare
Psyr_4278 -1.5 -2.1 regulatory protein, LuxR compare
Psyr_0916 -1.5 -7.4 GDP-mannose 4,6-dehydratase compare
Psyr_2318 -1.5 -2.4 CDS compare
Psyr_4566 -1.5 -6.9 Peptidase M23B compare
Psyr_0528 -1.5 -2.4 Carbamoyltransferase compare
Psyr_5133 -1.5 -3.6 tRNA modification GTPase trmE compare
Psyr_4842 -1.5 -5.4 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_4087 -1.5 -1.4 Protein of unknown function DUF520 compare
Psyr_0827 -1.4 -2.4 pantothenate synthetase compare
Psyr_3289 -1.4 -1.7 3-ketoacyl-CoA thiolase compare
Psyr_3690 -1.4 -3.5 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4224 -1.4 -1.6 conserved hypothetical protein compare
Psyr_3427 -1.4 -2.3 conserved hypothetical protein compare
Psyr_0184 -1.4 -2.0 Protein of unknown function DUF484 compare
Psyr_1212 -1.4 -1.9 type III secretion protein HrpO compare
Psyr_2743 -1.4 -3.8 Lysine exporter protein (LYSE/YGGA) compare
Psyr_1588 -1.4 -3.0 Putative exonuclease, RdgC compare
Psyr_3791 -1.4 -3.2 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_1268 -1.3 -4.0 extracellular solute-binding protein, family 3:SLT compare
Psyr_4158 -1.3 -6.3 conserved hypothetical protein compare
Psyr_4363 -1.3 -4.9 membrane-bound lytic murein transglycosylase B compare
Psyr_1140 -1.3 -2.0 Disulfide bond formation protein DsbB compare
Psyr_0815 -1.3 -3.0 nicotinate-nucleotide pyrophosphorylase (carboxylating) compare
Psyr_1725 -1.3 -1.9 Protein of unknown function DUF204 compare
Psyr_0386 -1.3 -2.7 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0437 -1.3 -1.5 acyl carrier protein, putative compare
Psyr_3906 -1.3 -1.7 regulatory protein, DeoR compare
Psyr_1218 -1.3 -6.6 type III helper protein HrpK1 compare
Psyr_0574 -1.3 -4.1 protease FtsH subunit HflK compare
Psyr_3852 -1.3 -4.1 lipoprotein SlyB, putative compare
Psyr_4895 -1.3 -2.5 conserved hypothetical protein compare
Psyr_1054 -1.3 -4.9 alginate biosynthesis protein AlgJ compare
Psyr_5053 -1.3 -4.4 asparaginase compare
Psyr_4070 -1.3 -3.5 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1816 -1.2 -2.5 transcriptional regulator, GntR family compare
Psyr_3698 -1.2 -2.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_1747 -1.2 -2.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_5130 -1.2 -5.2 chromosome segregation ATPase compare
Psyr_2423 -1.2 -2.8 hypothetical protein compare
Psyr_0796 -1.2 -4.0 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A compare
Psyr_2498 -1.2 -4.5 GCN5-related N-acetyltransferase compare
Psyr_0168 -1.2 -4.2 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_1251 -1.2 -2.6 quinoprotein compare
Psyr_3193 -1.2 -1.7 Transcription factor jumonji, jmjC compare
Psyr_0478 -1.2 -5.8 pilus retraction ATPase PilT compare
Psyr_1215 -1.2 -4.9 Type III secretion protein HrcV compare
Psyr_2031 -1.2 -2.3 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1408 -1.1 -2.0 Holliday junction endonuclease RuvC compare
Psyr_1511 -1.1 -3.4 type II secretion system protein E compare
Psyr_0395 -1.1 -2.0 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_3420 -1.1 -2.3 conserved hypothetical protein compare
Psyr_4786 -1.1 -1.4 hypothetical protein compare
Psyr_3013 -1.1 -0.8 magnesium chelatase subunit ChlD compare
Psyr_1555 -1.1 -2.7 Cobyrinic acid a,c-diamide synthase compare
Psyr_2077 -1.1 -3.7 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_3425 -1.1 -2.4 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_3014 -1.1 -2.6 protoporphyrin IX magnesium-chelatase compare
Psyr_0025 -1.1 -2.1 shikimate dehydrogenase compare
Psyr_1645 -1.1 -1.9 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_3842 -1.1 -4.3 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_0811 -1.1 -4.3 Integral membrane protein TerC compare
Psyr_0532 -1.1 -2.8 conserved hypothetical protein compare
Psyr_1751 -1.1 -2.5 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3676 -1.1 -2.3 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3212 -1.1 -4.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2433 -1.1 -2.5 conserved hypothetical protein compare
Psyr_4125 -1.1 -1.6 Protein of unknown function DUF1043 compare
Psyr_0718 -1.1 -1.5 type IV pilus assembly protein PilX compare
Psyr_3701 -1.1 -1.9 thioredoxin, putative compare
Psyr_1053 -1.1 -4.0 alginate biosynthesis protein AlgF compare
Psyr_1417 -1.0 -3.8 TPR repeat protein compare
Psyr_3149 -1.0 -2.2 General secretion pathway protein G compare
Psyr_4300 -1.0 -2.3 DNA polymerase III, epsilon subunit compare
Psyr_0511 -1.0 -1.7 conserved hypothetical protein compare
Psyr_1055 -1.0 -6.5 Membrane bound O-acyl transferase, MBOAT compare
Psyr_1196 -1.0 -1.3 type III secretion protein HrpD compare
Psyr_4843 -1.0 -3.0 NUDIX hydrolase compare
Psyr_1206 -1.0 -4.0 type III secretion protein HrcT compare
Psyr_3144 -1.0 -2.9 Fimbrial assembly compare
Psyr_1191 -1.0 -4.5 type III transcriptional regulator HrpS compare
Psyr_0320 -1.0 -3.0 Protein of unknown function UPF0149 compare


Specific Phenotypes

For 1 genes in this experiment