Experiment set6IT084 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Cobalt chloride hexahydrate 0.3 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS33255 -5.3 -3.0 protein-tyrosine phosphatase compare
RR42_RS06020 -5.3 -1.2 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS36990 -4.7 -12.0 hemolysin III conserved
RR42_RS18850 -4.3 -3.5 preprotein translocase subunit TatC compare
RR42_RS17885 -4.0 -5.8 ABC transporter permease compare
RR42_RS15800 -3.9 -3.8 aldo/keto reductase compare
RR42_RS04700 -3.9 -1.3 ribonuclease G compare
RR42_RS15795 -3.9 -4.5 spore coat protein compare
RR42_RS18855 -3.9 -4.1 preprotein translocase compare
RR42_RS00715 -3.9 -2.3 ferritin compare
RR42_RS15470 -3.7 -2.1 biopolymer transporter ExbD compare
RR42_RS33250 -3.7 -6.4 tyrosine protein kinase compare
RR42_RS33260 -3.6 -7.4 multidrug MFS transporter compare
RR42_RS18270 -3.6 -4.3 murein transglycosylase compare
RR42_RS01985 -3.5 -8.7 zinc protease compare
RR42_RS36045 -3.5 -8.2 hypothetical protein compare
RR42_RS06255 -3.4 -2.3 lipoprotein compare
RR42_RS01980 -3.3 -12.9 peptidase M16 compare
RR42_RS21665 -3.3 -7.4 cobalt transporter compare
RR42_RS12040 -3.3 -11.4 MFS transporter compare
RR42_RS13945 -3.3 -4.5 hypothetical protein compare
RR42_RS14495 -3.2 -8.2 hypothetical protein compare
RR42_RS15745 -3.2 -7.2 group1 glycosyl transferase compare
RR42_RS13910 -3.2 -6.9 glutamate racemase compare
RR42_RS14800 -3.0 -8.4 LysR family transcriptional regulator compare
RR42_RS33240 -2.9 -12.3 GDP-L-fucose synthase compare
RR42_RS36040 -2.9 -12.0 TonB-dependent receptor compare
RR42_RS12590 -2.9 -1.3 50S ribosomal protein L9 compare
RR42_RS15455 -2.8 -5.1 membrane protein compare
RR42_RS21075 -2.8 -1.1 phosphoribosyltransferase compare
RR42_RS15785 -2.6 -7.3 glycosyl transferase family 28 compare
RR42_RS17235 -2.6 -6.0 poly(A) polymerase compare
RR42_RS15790 -2.6 -4.5 aminotransferase class III compare
RR42_RS33215 -2.6 -10.7 transferase compare
RR42_RS00115 -2.6 -1.9 hypothetical protein compare
RR42_RS33245 -2.5 -7.9 mannose-1-phosphate guanyltransferase compare
RR42_RS07615 -2.5 -2.3 3-ketoacyl-ACP reductase compare
RR42_RS06580 -2.4 -5.4 aminoacrylate peracid reductase compare
RR42_RS02440 -2.4 -2.0 membrane protein compare
RR42_RS17590 -2.4 -2.0 16S rRNA methyltransferase compare
RR42_RS33235 -2.4 -8.4 GDP-mannose 4,6-dehydratase compare
RR42_RS21220 -2.4 -2.0 iron transporter FeoB compare
RR42_RS24930 -2.4 -0.9 AraC family transcriptional regulator compare
RR42_RS15710 -2.4 -5.0 LPS biosynthesis protein compare
RR42_RS13935 -2.4 -1.8 hemin transporter compare
RR42_RS02810 -2.3 -2.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS17620 -2.3 -3.6 phosphatidylglycerophosphatase compare
RR42_RS08210 -2.3 -1.3 hypothetical protein compare
RR42_RS15770 -2.3 -4.4 hypothetical protein compare
RR42_RS02065 -2.3 -1.5 phosphate starvation-inducible protein PsiF compare
RR42_RS19480 -2.2 -6.5 secretion system protein G compare
RR42_RS07555 -2.2 -2.3 potassium transporter Kup compare
RR42_RS18840 -2.2 -5.1 2-alkenal reductase compare
RR42_RS07140 -2.1 -1.6 hypothetical protein compare
RR42_RS15825 -2.1 -8.2 capsular biosynthesis protein compare
RR42_RS06585 -2.1 -13.0 GTP pyrophosphokinase compare
RR42_RS02505 -2.1 -8.7 acyl-CoA dehydrogenase compare
RR42_RS15775 -2.1 -3.5 N-acetylneuraminate synthase compare
RR42_RS06240 -2.0 -2.0 tryptophan--tRNA ligase compare
RR42_RS01820 -2.0 -5.9 peptidase S41 compare
RR42_RS30930 -2.0 -5.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
RR42_RS27950 -2.0 -3.2 peptidylprolyl isomerase compare
RR42_RS17105 -2.0 -9.5 Clp protease ClpX compare
RR42_RS05890 -2.0 -9.4 glutamine-synthetase adenylyltransferase compare
RR42_RS04300 -2.0 -4.0 nitrogen regulatory protein P-II 1 compare
RR42_RS15730 -2.0 -4.9 sugar transferase compare
RR42_RS33815 -2.0 -1.0 isochorismatase compare
RR42_RS17990 -2.0 -7.3 methyltransferase compare
RR42_RS17050 -2.0 -5.7 phosphoribosylglycinamide formyltransferase compare
RR42_RS02775 -1.9 -1.8 molecular chaperone SurA compare
RR42_RS12860 -1.9 -2.0 pseudouridine synthase compare
RR42_RS14055 -1.9 -3.2 elongation factor 4 compare
RR42_RS36665 -1.9 -6.0 hypothetical protein compare
RR42_RS19065 -1.9 -6.9 transcriptional regulator compare
RR42_RS07455 -1.9 -8.1 ABC transporter substrate-binding protein compare
RR42_RS02500 -1.9 -1.5 TetR family transcriptional regulator compare
RR42_RS12615 -1.8 -1.9 LexA family transcriptional regulator compare
RR42_RS14790 -1.8 -8.2 cobalamin biosynthesis protein CobD compare
RR42_RS04960 -1.8 -2.9 Fe(II)-dependent oxygenase compare
RR42_RS15460 -1.8 -5.1 translocation protein TolB compare
RR42_RS19445 -1.8 -6.1 TetR family transcriptional regulator compare
RR42_RS12305 -1.8 -1.0 hypothetical protein compare
RR42_RS32710 -1.8 -2.0 hypothetical protein compare
RR42_RS15755 -1.8 -2.4 acetyltransferase compare
RR42_RS15740 -1.8 -1.8 hypothetical protein compare
RR42_RS13065 -1.8 -8.1 ribonuclease R compare
RR42_RS33210 -1.8 -3.7 teichoic acid biosynthesis protein compare
RR42_RS22590 -1.7 -1.0 organic hydroperoxide resistance protein compare
RR42_RS28290 -1.7 -3.1 DNA-binding protein compare
RR42_RS22890 -1.7 -6.4 TetR family transcriptional regulator compare
RR42_RS15465 -1.7 -1.8 TonB-dependent receptor compare
RR42_RS01435 -1.7 -2.8 short-chain dehydrogenase compare
RR42_RS27625 -1.7 -2.8 TetR family transcriptional regulator compare
RR42_RS06875 -1.7 -1.7 hypothetical protein compare
RR42_RS13465 -1.7 -1.9 phosphate transporter permease subunit PstC compare
RR42_RS05990 -1.7 -5.9 aromatic amino acid aminotransferase compare
RR42_RS15895 -1.6 -4.0 uroporphyrinogen III methyltransferase compare
RR42_RS31760 -1.6 -8.5 IclR family transcriptional regulator compare
RR42_RS18140 -1.6 -1.4 MarR family transcriptional regulator compare
RR42_RS15475 -1.6 -2.8 protein tolQ compare
RR42_RS11120 -1.6 -2.3 DNA-binding protein compare
RR42_RS27945 -1.6 -3.5 RNA chaperone Hfq compare
RR42_RS15070 -1.6 -4.2 membrane protein compare
RR42_RS03145 -1.6 -6.5 peptidase M48 compare
RR42_RS12015 -1.6 -2.2 dihydrolipoamide acyltransferase compare
RR42_RS02785 -1.6 -2.6 dimethyladenosine transferase compare
RR42_RS35020 -1.6 -3.0 rubredoxin compare
RR42_RS05965 -1.6 -1.6 malonic semialdehyde reductase compare
RR42_RS34650 -1.5 -4.8 LacI family transcriptional regulator compare
RR42_RS21380 -1.5 -1.5 cupin compare
RR42_RS32235 -1.5 -4.6 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS15890 -1.5 -5.7 heme biosynthesis protein HemY compare
RR42_RS19900 -1.5 -1.3 MerR family transcriptional regulator compare
RR42_RS37270 -1.5 -5.3 Fur family transcriptional regulator compare
RR42_RS35875 -1.4 -6.0 UDP-galactose-4-epimerase compare
RR42_RS00625 -1.4 -1.0 hypothetical protein compare
RR42_RS15735 -1.4 -5.2 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS03415 -1.4 -3.0 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS14760 -1.4 -3.4 molybdenum cofactor biosynthesis protein MogA compare
RR42_RS03080 -1.4 -1.6 recombinase RecA compare
RR42_RS17110 -1.4 -6.6 ATP-dependent Clp protease adapter protein ClpS compare
RR42_RS18925 -1.4 -4.5 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
RR42_RS16640 -1.4 -1.4 LysR family transcriptional regulator compare
RR42_RS00360 -1.4 -1.7 Asp/Glu/hydantoin racemase compare
RR42_RS03685 -1.4 -1.6 GTP cyclohydrolase compare
RR42_RS14080 -1.3 -5.6 RNA polymerase sigma factor RpoE compare
RR42_RS22570 -1.3 -1.6 SAM-dependent methyltransferase compare
RR42_RS17720 -1.3 -1.8 sugar kinase compare
RR42_RS06575 -1.3 -3.9 alpha/beta hydrolase compare
RR42_RS13365 -1.3 -1.1 peptidase P60 compare
RR42_RS13595 -1.3 -2.9 hypothetical protein compare
RR42_RS11415 -1.3 -3.7 hypothetical protein compare
RR42_RS03110 -1.3 -3.9 pilus assembly protein TapA compare
RR42_RS00790 -1.3 -5.9 chemotaxis protein CheY compare
RR42_RS09180 -1.3 -0.7 Rrf2 family transcriptional regulator compare
RR42_RS03035 -1.3 -0.9 membrane protein compare
RR42_RS03160 -1.3 -6.6 hypothetical protein compare
RR42_RS14860 -1.3 -1.2 hypothetical protein compare
RR42_RS27215 -1.3 -1.8 LysR family transcriptional regulator compare
RR42_RS16225 -1.3 -6.4 cytosol aminopeptidase compare
RR42_RS07255 -1.3 -2.4 hypothetical protein compare
RR42_RS02705 -1.3 -1.7 Holliday junction DNA helicase RuvA compare
RR42_RS08615 -1.2 -2.3 membrane protein compare
RR42_RS09255 -1.2 -2.5 copper resistance protein CopQ compare
RR42_RS30945 -1.2 -1.9 cytochrome C peroxidase conserved
RR42_RS27010 -1.2 -5.8 D-3-phosphoglycerate dehydrogenase conserved
RR42_RS26555 -1.2 -1.2 tRNA-Met compare
RR42_RS23035 -1.2 -1.8 sporulation protein compare
RR42_RS16535 -1.2 -2.2 hypothetical protein compare
RR42_RS19090 -1.2 -1.3 cytochrome C compare
RR42_RS23515 -1.2 -3.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS23130 -1.2 -2.2 bleomycin resistance protein compare
RR42_RS01450 -1.2 -1.8 hypothetical protein compare
RR42_RS20005 -1.2 -1.8 hypothetical protein compare
RR42_RS03940 -1.2 -1.1 membrane protein compare
RR42_RS17555 -1.2 -0.9 hypothetical protein compare
RR42_RS01795 -1.2 -7.7 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS34535 -1.2 -1.3 membrane protein compare
RR42_RS37320 -1.2 -1.3 hypothetical protein compare
RR42_RS33080 -1.2 -4.7 IclR family transcriptional regulator compare
RR42_RS14395 -1.2 -1.2 entericidin compare
RR42_RS04180 -1.2 -1.3 methyltransferase compare
RR42_RS20370 -1.2 -1.0 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS16525 -1.1 -1.4 anti-sigma factor compare
RR42_RS15015 -1.1 -0.8 exodeoxyribonuclease VII small subunit compare
RR42_RS07450 -1.1 -4.9 ABC transporter permease compare
RR42_RS32035 -1.1 -2.2 short-chain dehydrogenase compare
RR42_RS07590 -1.1 -2.3 pseudouridine synthase compare
RR42_RS23110 -1.1 -1.0 isochorismatase compare
RR42_RS05425 -1.1 -3.7 membrane protein compare
RR42_RS26900 -1.1 -1.7 enoyl-CoA hydratase compare
RR42_RS14355 -1.1 -3.4 DNA methylase N-4 compare
RR42_RS31270 -1.1 -2.8 fumarylacetoacetase compare
RR42_RS10855 -1.1 -0.7 diguanylate phosphodiesterase compare
RR42_RS03620 -1.1 -2.2 lipid A biosynthesis lauroyl acyltransferase compare
RR42_RS33085 -1.1 -7.2 ligand-gated channel protein compare
RR42_RS05920 -1.1 -2.6 HrcA family transcriptional regulator compare
RR42_RS02310 -1.1 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS16360 -1.1 -1.4 transposase compare
RR42_RS20365 -1.1 -5.4 phenylalanine-4-hydroxylase compare
RR42_RS00460 -1.1 -3.3 septum formation inhibitor compare
RR42_RS28400 -1.1 -1.9 CoA-transferase compare
RR42_RS28695 -1.1 -1.3 hypothetical protein compare
RR42_RS27550 -1.1 -0.8 hypothetical protein compare
RR42_RS05885 -1.1 -5.3 hypothetical protein compare
RR42_RS24815 -1.0 -2.5 hypothetical protein compare
RR42_RS08245 -1.0 -1.7 hypothetical protein compare
RR42_RS02375 -1.0 -4.5 membrane protein compare
RR42_RS33495 -1.0 -7.4 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS04350 -1.0 -3.5 ABC transporter ATP-binding protein compare
RR42_RS23485 -1.0 -1.5 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
RR42_RS16240 -1.0 -1.1 cobalamin biosynthesis protein CbiX compare
RR42_RS14175 -1.0 -4.4 molybdenum cofactor biosynthesis protein MoaA compare
RR42_RS01970 -1.0 -2.9 maleylacetoacetate isomerase compare
RR42_RS31910 -1.0 -1.1 acyl-CoA dehydrogenase compare
RR42_RS26995 -1.0 -2.0 iron transporter compare
RR42_RS07575 -1.0 -2.4 hypothetical protein compare
RR42_RS26265 -1.0 -0.8 hypothetical protein compare
RR42_RS06270 -1.0 -3.2 cupin compare
RR42_RS30320 -1.0 -1.5 hypothetical protein compare


Specific Phenotypes

For 22 genes in this experiment

For stress Cobalt chloride hexahydrate in Cupriavidus basilensis FW507-4G11

For stress Cobalt chloride hexahydrate across organisms