Experiment set6IT084 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -10.7 -6.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -6.8 -4.7 NUDIX domain-containing protein compare
ABZR87_RS05100 -6.5 -6.7 RNA polymerase-binding protein DksA compare
ABZR87_RS08695 -5.5 -16.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS07355 -5.4 -6.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS02550 -5.2 -3.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS00970 -5.1 -2.9 molecular chaperone DnaJ compare
ABZR87_RS02535 -4.7 -4.6 phospholipid-binding protein MlaC compare
ABZR87_RS03420 -4.6 -1.2 type II secretion system minor pseudopilin GspI compare
ABZR87_RS13250 -4.6 -3.8 phosphoserine phosphatase SerB compare
ABZR87_RS08630 -4.3 -9.8 dihydroorotase compare
ABZR87_RS07735 -4.3 -5.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS13790 -4.2 -10.3 chorismate synthase compare
ABZR87_RS08625 -4.0 -2.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS08795 -3.9 -4.6 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS02565 -3.9 -6.5 glutamate synthase subunit beta compare
ABZR87_RS02545 -3.9 -7.8 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS01855 -3.8 -12.9 A24 family peptidase compare
ABZR87_RS02640 -3.8 -15.6 diaminopimelate decarboxylase compare
ABZR87_RS02590 -3.7 -11.5 3-dehydroquinate synthase compare
ABZR87_RS04865 -3.7 -6.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS13645 -3.7 -0.9 hypothetical protein compare
ABZR87_RS14330 -3.7 -0.9 hypothetical protein compare
ABZR87_RS14530 -3.6 -10.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS01615 -3.6 -1.2 RNB domain-containing ribonuclease compare
ABZR87_RS00435 -3.5 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS08070 -3.5 -2.4 pyruvate kinase compare
ABZR87_RS02555 -3.5 -8.4 ABC transporter ATP-binding protein compare
ABZR87_RS12785 -3.5 -3.4 endopeptidase La compare
ABZR87_RS02540 -3.4 -7.2 VacJ family lipoprotein compare
ABZR87_RS03425 -3.3 -7.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS02440 -3.2 -11.4 twin-arginine translocase subunit TatC compare
ABZR87_RS10195 -3.2 -5.2 signal peptidase I compare
ABZR87_RS02145 -3.2 -2.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS04995 -3.2 -2.2 DNA topoisomerase III compare
ABZR87_RS03075 -3.2 -11.1 AGE family epimerase/isomerase compare
ABZR87_RS07760 -3.2 -3.1 HlyC/CorC family transporter compare
ABZR87_RS07380 -3.2 -17.1 FAD/FMN-binding oxidoreductase compare
ABZR87_RS10550 -3.1 -1.3 outer membrane protein assembly factor BamC compare
ABZR87_RS10085 -3.0 -1.5 Rne/Rng family ribonuclease compare
ABZR87_RS09505 -3.0 -8.2 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS09465 -3.0 -6.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02155 -3.0 -7.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS07005 -3.0 -1.7 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS10980 -3.0 -1.1 tRNA-Leu compare
ABZR87_RS17650 -3.0 -7.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03460 -2.9 -12.3 type II secretion system inner membrane protein GspF compare
ABZR87_RS14500 -2.9 -12.0 tryptophan synthase subunit beta compare
ABZR87_RS14535 -2.8 -4.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS04975 -2.8 -2.7 peptide deformylase compare
ABZR87_RS04940 -2.8 -5.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS03435 -2.8 -8.0 type II secretion system protein GspL compare
ABZR87_RS04945 -2.7 -2.5 DUF4390 domain-containing protein compare
ABZR87_RS07035 -2.7 -7.0 RNase adapter RapZ compare
ABZR87_RS06845 -2.7 -8.1 heme o synthase compare
ABZR87_RS14490 -2.7 -10.5 tryptophan synthase subunit alpha compare
ABZR87_RS12800 -2.7 -5.9 trigger factor compare
ABZR87_RS03450 -2.7 -12.1 type II secretion system secretin GspD compare
ABZR87_RS02570 -2.6 -17.7 glutamate synthase-related protein compare
ABZR87_RS20880 -2.6 -8.4 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS20875 -2.6 -6.8 LysR family transcriptional regulator compare
ABZR87_RS16960 -2.6 -4.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS20555 -2.6 -4.2 helix-turn-helix transcriptional regulator compare
ABZR87_RS13705 -2.6 -1.1 integration host factor subunit alpha compare
ABZR87_RS03455 -2.6 -12.0 type II secretion system ATPase GspE compare
ABZR87_RS09445 -2.6 -10.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS03430 -2.6 -11.3 type II secretion system minor pseudopilin GspK compare
ABZR87_RS20785 -2.6 -0.9 DUF2783 domain-containing protein compare
ABZR87_RS02655 -2.6 -8.5 anti-sigma factor compare
ABZR87_RS09450 -2.6 -7.3 prephenate dehydratase compare
ABZR87_RS02850 -2.5 -3.0 elongation factor Tu compare
ABZR87_RS02445 -2.5 -3.2 Sec-independent protein translocase protein TatB compare
ABZR87_RS14505 -2.5 -3.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS05570 -2.5 -10.5 lysophospholipid acyltransferase family protein compare
ABZR87_RS01035 -2.4 -6.9 histidine utilization repressor compare
ABZR87_RS06350 -2.4 -10.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS01885 -2.4 -4.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS14540 -2.4 -7.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02385 -2.4 -5.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS01225 -2.4 -2.9 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS08700 -2.4 -7.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS05965 -2.4 -2.0 hemerythrin domain-containing protein compare
ABZR87_RS07730 -2.4 -1.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS07665 -2.3 -8.7 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS22970 -2.3 -8.3 cystathionine gamma-synthase family protein compare
ABZR87_RS16735 -2.3 -14.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS13475 -2.3 -3.8 PAS domain S-box protein compare
ABZR87_RS05590 -2.3 -2.7 orotate phosphoribosyltransferase compare
ABZR87_RS02380 -2.3 -10.8 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS00795 -2.3 -1.6 site-specific tyrosine recombinase XerD compare
ABZR87_RS14605 -2.2 -7.7 aconitate hydratase AcnA compare
ABZR87_RS11245 -2.2 -4.5 translational GTPase TypA compare
ABZR87_RS14965 -2.2 -3.4 DUF3619 family protein compare
ABZR87_RS22920 -2.2 -3.0 phosphogluconate dehydratase compare
ABZR87_RS01685 -2.2 -5.7 histone H1-like DNA-binding protein compare
ABZR87_RS03410 -2.2 -6.6 type II secretion system major pseudopilin GspG compare
ABZR87_RS09500 -2.2 -3.7 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS10870 -2.2 -7.4 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS05200 -2.2 -11.9 homoserine O-acetyltransferase compare
ABZR87_RS15715 -2.2 -7.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS11940 -2.1 -3.6 SsrA-binding protein SmpB compare
ABZR87_RS16340 -2.1 -1.9 ABC transporter ATP-binding protein compare
ABZR87_RS03440 -2.1 -5.1 type II secretion system protein GspM compare
ABZR87_RS08990 -2.1 -4.2 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS02375 -2.1 -6.9 cytochrome c1 compare
ABZR87_RS05305 -2.1 -8.5 TetR family transcriptional regulator compare
ABZR87_RS07620 -2.1 -1.4 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS13400 -2.1 -0.7 hypothetical protein compare
ABZR87_RS01645 -2.1 -4.7 type II 3-dehydroquinate dehydratase compare
ABZR87_RS12970 -2.0 -3.4 putative holin compare
ABZR87_RS00340 -2.0 -2.3 50S ribosomal protein L33 compare
ABZR87_RS01810 -2.0 -2.9 glutamate 5-kinase compare
ABZR87_RS10120 -2.0 -1.4 YceD family protein compare
ABZR87_RS03415 -2.0 -7.6 GspH/FimT family pseudopilin compare
ABZR87_RS05140 -2.0 -2.8 ATP-binding protein compare
ABZR87_RS02140 -2.0 -11.9 anthranilate synthase component I compare
ABZR87_RS10175 -2.0 -4.0 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01780 -2.0 -1.0 MarC family protein compare
ABZR87_RS16730 -2.0 -6.6 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS10610 -2.0 -1.0 inositol monophosphatase family protein compare
ABZR87_RS07360 -2.0 -8.7 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS10170 -2.0 -3.8 RseA family anti-sigma factor compare
ABZR87_RS02160 -1.9 -4.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16125 -1.9 -6.7 heme biosynthesis protein HemY compare
ABZR87_RS02595 -1.9 -7.6 shikimate kinase compare
ABZR87_RS13285 -1.9 -8.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS08985 -1.9 -6.6 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS11440 -1.9 -6.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09635 -1.9 -1.2 ribosome small subunit-dependent GTPase A compare
ABZR87_RS09955 -1.9 -5.2 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS13050 -1.9 -0.8 GpE family phage tail protein compare
ABZR87_RS08645 -1.9 -0.7 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS01085 -1.9 -2.5 rhombosortase compare
ABZR87_RS03565 -1.9 -6.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08465 -1.8 -2.4 GtrA family protein compare
ABZR87_RS06745 -1.8 -6.4 S41 family peptidase compare
ABZR87_RS05065 -1.8 -3.2 tyrosine recombinase XerC compare
ABZR87_RS13540 -1.8 -2.3 DUF1488 family protein compare
ABZR87_RS01270 -1.8 -7.2 ATP-dependent DNA helicase RecG compare
ABZR87_RS10080 -1.7 -6.5 GTP 3',8-cyclase MoaA compare
ABZR87_RS16055 -1.7 -4.9 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS01980 -1.7 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS13415 -1.7 -4.1 IclR family transcriptional regulator compare
ABZR87_RS01640 -1.7 -2.2 TlpA disulfide reductase family protein compare
ABZR87_RS16660 -1.7 -6.5 helix-turn-helix domain-containing protein compare
ABZR87_RS22340 -1.7 -1.3 hypothetical protein compare
ABZR87_RS06495 -1.7 -1.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS04880 -1.7 -6.6 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS12425 -1.7 -2.0 ABC transporter ATP-binding protein compare
ABZR87_RS11435 -1.7 -3.0 Mth938-like domain-containing protein compare
ABZR87_RS11815 -1.7 -7.9 [protein-PII] uridylyltransferase compare
ABZR87_RS06715 -1.7 -2.8 PTS sugar transporter subunit IIA compare
ABZR87_RS03445 -1.7 -5.9 type II secretion system protein N compare
ABZR87_RS19010 -1.7 -1.4 acyloxyacyl hydrolase compare
ABZR87_RS08750 -1.6 -2.5 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS07965 -1.6 -4.6 recombinase RecA compare
ABZR87_RS09710 -1.6 -1.9 tRNA-Arg compare
ABZR87_RS07700 -1.6 -1.1 peptidylprolyl isomerase compare
ABZR87_RS05350 -1.6 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS07510 -1.6 -3.3 LysR family transcriptional regulator compare
ABZR87_RS15485 -1.6 -4.1 glycosyltransferase family 2 protein compare
ABZR87_RS02075 -1.6 -1.1 23S ribosomal RNA compare
ABZR87_RS08970 -1.6 -5.1 protein TolQ compare
ABZR87_RS00830 -1.6 -2.9 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS02320 -1.5 -1.3 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS04785 -1.5 -7.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS10800 -1.5 -2.1 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS06645 -1.5 -0.9 TlpA disulfide reductase family protein compare
ABZR87_RS09650 -1.5 -6.1 molybdopterin adenylyltransferase compare
ABZR87_RS17910 -1.5 -5.8 IclR family transcriptional regulator compare
ABZR87_RS22830 -1.5 -1.6 Crp/Fnr family transcriptional regulator compare
ABZR87_RS06400 -1.5 -4.4 response regulator transcription factor compare
ABZR87_RS12145 -1.5 -4.2 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS08710 -1.5 -9.1 sugar transferase compare
ABZR87_RS20690 -1.5 -1.4 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS15665 -1.5 -4.6 ZIP family metal transporter compare
ABZR87_RS02325 -1.5 -3.2 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS11625 -1.5 -5.6 malate synthase A compare
ABZR87_RS00875 -1.5 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS16820 -1.5 -4.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS17440 -1.5 -1.0 (2Fe-2S)-binding protein compare
ABZR87_RS01675 -1.5 -2.5 carbohydrate kinase family protein compare
ABZR87_RS02575 -1.4 -6.2 transposase compare
ABZR87_RS16270 -1.4 -1.5 cold-shock protein compare
ABZR87_RS16170 -1.4 -1.0 argininosuccinate lyase compare
ABZR87_RS04615 -1.4 -3.4 Rrf2 family transcriptional regulator compare
ABZR87_RS21950 -1.4 -3.0 hypothetical protein compare
ABZR87_RS11195 -1.4 -6.7 pseudouridine synthase compare
ABZR87_RS08680 -1.4 -5.6 glycosyltransferase compare
ABZR87_RS08670 -1.4 -6.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS14010 -1.4 -1.6 avidin/streptavidin family protein compare
ABZR87_RS22910 -1.4 -1.4 6-phosphogluconolactonase compare
ABZR87_RS15990 -1.4 -4.7 aldehyde dehydrogenase family protein compare
ABZR87_RS12790 -1.4 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS13805 -1.4 -4.9 CBS domain-containing protein compare
ABZR87_RS06705 -1.4 -7.5 glutamate--cysteine ligase compare
ABZR87_RS02220 -1.4 -7.4 redox-regulated ATPase YchF compare
ABZR87_RS06840 -1.4 -4.3 COX15/CtaA family protein compare
ABZR87_RS16250 -1.4 -2.8 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS15490 -1.4 -7.4 glycosyltransferase family 2 protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in in planta experiments

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms