Experiment set6IT083 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.6 -7.0 O-succinylhomoserine sulfhydrylase compare
AO353_12090 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05115 -4.4 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07230 -3.9 -16.8 anthranilate synthase compare
AO353_20625 -3.8 -5.1 3-isopropylmalate dehydratase compare
AO353_24130 -3.7 -5.0 hypothetical protein compare
AO353_01375 -3.7 -7.8 phosphate acyltransferase compare
AO353_13165 -3.7 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
AO353_13070 -3.7 -7.1 phosphoserine phosphatase compare
AO353_00310 -3.7 -10.2 transaldolase compare
AO353_12085 -3.6 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12075 -3.6 -8.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08475 -3.5 -10.1 phosphoserine phosphatase compare
AO353_08685 -3.5 -9.2 N-acetylglutamate synthase compare
AO353_07215 -3.4 -9.1 anthranilate phosphoribosyltransferase compare
AO353_22800 -3.4 -4.6 sulfite reductase compare
AO353_07210 -3.4 -6.5 indole-3-glycerol-phosphate synthase compare
AO353_12070 -3.4 -10.0 imidazoleglycerol-phosphate dehydratase compare
AO353_20620 -3.4 -7.9 isopropylmalate isomerase compare
AO353_14505 -3.4 -13.0 ketol-acid reductoisomerase compare
AO353_10710 -3.3 -5.5 tryptophan synthase subunit beta compare
AO353_07420 -3.3 -16.9 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) conserved
AO353_12515 -3.3 -21.8 glutamate synthase compare
AO353_02075 -3.3 -12.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08180 -3.3 -14.9 homoserine O-acetyltransferase compare
AO353_01080 -3.3 -12.6 hypothetical protein compare
AO353_12520 -3.2 -11.8 glutamate synthase compare
AO353_08345 -3.2 -10.1 dihydroxy-acid dehydratase compare
AO353_07415 -3.2 -8.0 AsnC family transcriptional regulator conserved
AO353_22945 -3.2 -15.7 glycogen branching protein compare
AO353_07220 -3.2 -9.2 anthranilate synthase compare
AO353_20635 -3.2 -14.2 3-isopropylmalate dehydrogenase compare
AO353_20665 -3.1 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05110 -3.1 -12.5 histidinol dehydrogenase compare
AO353_12365 -3.1 -5.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_19060 -3.1 -6.1 CysB family transcriptional regulator compare
AO353_14500 -3.0 -7.6 acetolactate synthase 3 regulatory subunit compare
AO353_20540 -3.0 -9.2 aromatic amino acid aminotransferase compare
AO353_04105 -3.0 -9.7 argininosuccinate synthase compare
AO353_09000 -3.0 -6.0 argininosuccinate lyase compare
AO353_15925 -3.0 -13.1 2-isopropylmalate synthase compare
AO353_14495 -2.9 -11.9 acetolactate synthase 3 catalytic subunit compare
AO353_12145 -2.9 -5.9 nitrogen regulation protein NR(I) compare
AO353_08185 -2.8 -8.6 methionine biosynthesis protein MetW compare
AO353_12150 -2.7 -7.5 histidine kinase compare
AO353_02070 -2.7 -8.9 prephenate dehydratase compare
AO353_08015 -2.7 -8.2 5,10-methylenetetrahydrofolate reductase compare
AO353_00825 -2.7 -5.6 porin compare
AO353_04155 -2.6 -12.4 ornithine carbamoyltransferase compare
AO353_12360 -2.6 -9.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08165 -2.6 -3.9 pyrroline-5-carboxylate reductase compare
AO353_09240 -2.5 -3.8 acetylglutamate kinase compare
AO353_03360 -2.5 -9.5 glucose-6-phosphate dehydrogenase compare
AO353_06495 -2.5 -6.6 gamma-glutamyl phosphate reductase compare
AO353_12115 -2.4 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08510 -2.4 -5.5 3-phosphoglycerate dehydrogenase compare
AO353_07155 -2.3 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14220 -2.3 -2.7 ribosomal large subunit pseudouridine synthase D compare
AO353_10670 -2.3 -7.4 shikimate dehydrogenase compare
AO353_14115 -2.3 -7.9 gamma-glutamyl kinase compare
AO353_14400 -2.3 -4.3 Fis family transcriptional regulator compare
AO353_02250 -2.3 -4.2 chorismate synthase compare
AO353_10705 -2.2 -5.0 tryptophan synthase subunit alpha compare
AO353_03585 -2.1 -2.7 ATP-dependent DNA helicase RuvA compare
AO353_20175 -2.1 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_01550 -2.0 -5.8 hypothetical protein compare
AO353_16450 -2.0 -10.8 protein-PII uridylyltransferase compare
AO353_14420 -2.0 -4.3 molecular chaperone DnaK compare
AO353_10945 -1.9 -2.9 cytochrome C compare
AO353_09915 -1.8 -8.4 long-chain acyl-CoA thioester hydrolase compare
AO353_12500 -1.8 -2.1 shikimate kinase compare
AO353_27650 -1.8 -5.2 cell division protein FtsK compare
AO353_08560 -1.8 -7.8 spermidine/putrescine ABC transporter permease compare
AO353_08565 -1.8 -11.2 spermidine/putrescine ABC transporter permease conserved
AO353_07425 -1.7 -9.9 5-aminopentanamidase (EC 3.5.1.30) (from data) conserved
AO353_08580 -1.7 -10.2 spermidine/putrescine ABC transporter substrate-binding protein conserved
AO353_13640 -1.7 -4.8 histidine kinase compare
AO353_23495 -1.7 -3.3 SAM-dependent methyltransferase compare
AO353_03580 -1.6 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_06050 -1.6 -6.7 exodeoxyribonuclease V subunit gamma compare
AO353_08570 -1.6 -8.6 transporter conserved
AO353_03420 -1.6 -5.0 phosphogluconate dehydratase compare
AO353_10025 -1.5 -10.2 pyruvate carboxylase subunit B compare
AO353_15250 -1.5 -3.4 cytochrome B compare
AO353_13140 -1.4 -5.3 tRNA dimethylallyltransferase compare
AO353_02710 -1.4 -9.0 (p)ppGpp synthetase compare
AO353_29215 -1.4 -2.8 alpha/beta hydrolase compare
AO353_09720 -1.4 -1.5 hypothetical protein compare
AO353_06040 -1.4 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_08350 -1.4 -6.4 hypothetical protein compare
AO353_02465 -1.3 -2.2 hypothetical protein compare
AO353_20095 -1.3 -4.9 histidine kinase compare
AO353_10030 -1.3 -7.5 pyruvate carboxylase subunit A compare
AO353_12710 -1.3 -2.0 thioredoxin compare
AO353_00660 -1.3 -2.9 transcriptional regulator compare
AO353_08780 -1.3 -5.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12105 -1.3 -5.2 peptidase S41 compare
AO353_16960 -1.2 -8.0 amino acid ABC transporter permease conserved
AO353_02945 -1.2 -5.7 magnesium transporter compare
AO353_07105 -1.2 -1.7 biotin--protein ligase compare
AO353_03590 -1.2 -3.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_11510 -1.2 -8.5 5-aminovalerate transaminase (EC 2.6.1.48) (from data) conserved
AO353_10035 -1.2 -6.4 LysR family transcriptional regulator compare
AO353_11770 -1.2 -2.0 molecular chaperone Hsp33 compare
AO353_17640 -1.1 -2.5 serine peptidase compare
AO353_14775 -1.1 -4.7 hypothetical protein compare
AO353_07525 -1.1 -8.0 biotin synthase compare
AO353_06045 -1.1 -5.4 exodeoxyribonuclease V subunit beta compare
AO353_16965 -1.1 -6.3 amino acid ABC transporter permease conserved
AO353_27685 -1.1 -3.4 cold-shock protein compare
AO353_05325 -1.1 -4.7 GntR family transcriptional regulator compare
AO353_26885 -1.1 -5.6 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
AO353_03715 -1.1 -1.8 H-NS histone compare
AO353_08485 -1.1 -7.6 threonine dehydratase compare
AO353_18005 -1.1 -3.8 allophanate hydrolase compare
AO353_16970 -1.1 -5.2 ABC transporter substrate-binding protein conserved
AO353_06455 -1.1 -1.9 D-alanyl-D-alanine carboxypeptidase compare
AO353_03415 -1.0 -4.1 glucokinase compare
AO353_14740 -1.0 -2.9 GTP-binding protein compare
AO353_05080 -1.0 -6.0 sulfate adenylyltransferase compare
AO353_20590 -1.0 -2.2 hydrolase compare
AO353_09250 -1.0 -2.2 exodeoxyribonuclease III compare
AO353_01985 -1.0 -5.9 hypothetical protein compare
AO353_04365 -1.0 -4.1 recombinase XerD compare
AO353_05800 -1.0 -3.7 hypothetical protein compare
AO353_03615 -1.0 -2.5 cold-shock protein compare
AO353_09135 -1.0 -2.0 cytochrome C compare
AO353_15830 -1.0 -1.6 transcriptional regulator compare
AO353_18700 -1.0 -2.7 flagellar biogenesis protein compare
AO353_05690 -1.0 -2.5 SsrA-binding protein compare
AO353_02720 -1.0 -4.1 cysteine synthase compare
AO353_04355 -0.9 -1.8 homoserine dehydrogenase compare
AO353_00515 -0.9 -2.2 hypothetical protein compare
AO353_09660 -0.9 -1.4 hypothetical protein compare
AO353_14370 -0.9 -4.2 glucose-6-phosphate isomerase compare
AO353_04175 -0.9 -3.3 glycerol uptake facilitator GlpF compare
AO353_28380 -0.9 -2.8 GntR family transcriptional regulator compare
AO353_23440 -0.9 -2.2 hypothetical protein compare
AO353_23385 -0.9 -3.6 trans-2-enoyl-CoA reductase compare
AO353_02685 -0.9 -2.2 phosphoribosylglycinamide formyltransferase compare
AO353_28910 -0.9 -2.4 hypothetical protein compare
AO353_02010 -0.9 -3.7 glycosyl transferase family 1 compare
AO353_20170 -0.9 -3.3 trigger factor compare
AO353_09875 -0.9 -1.8 hypothetical protein compare
AO353_03235 -0.8 -5.1 glutamate-pyruvate aminotransferase compare
AO353_08115 -0.8 -3.7 energy transducer TonB compare
AO353_20660 -0.8 -2.6 pseudouridine synthase compare
AO353_16805 -0.8 -3.8 recombinase RecA compare
AO353_24605 -0.8 -2.1 hypothetical protein compare
AO353_18985 -0.8 -2.4 hypothetical protein compare
AO353_08975 -0.8 -3.5 heme biosynthesis protein HemY compare
AO353_08980 -0.8 -1.9 heme biosynthesis operon protein HemX compare
AO353_21290 -0.8 -2.1 hypothetical protein compare
AO353_03545 -0.8 -3.9 hypothetical protein compare
AO353_27090 -0.8 -1.0 hypothetical protein compare
AO353_07645 -0.8 -1.4 sarcosine oxidase subunit gamma compare
AO353_09285 -0.8 -5.1 reactive intermediate/imine deaminase compare
AO353_01975 -0.8 -3.9 glycosyl transferase compare
AO353_08885 -0.8 -6.3 polyphosphate kinase compare
AO353_03245 -0.8 -4.2 permease DsdX compare
AO353_03595 -0.8 -2.5 hypothetical protein compare
AO353_05105 -0.8 -4.5 histidinol-phosphate aminotransferase compare
AO353_12580 -0.8 -1.6 type II secretory protein PulK compare
AO353_23950 -0.8 -2.6 hypothetical protein compare
AO353_17085 -0.8 -2.1 hypothetical protein compare
AO353_07250 -0.8 -1.6 polyamine ABC transporter permease compare
AO353_18000 -0.7 -4.3 allophanate hydrolase compare
AO353_23790 -0.7 -2.0 metal-binding protein compare
AO353_01085 -0.7 -4.6 methionyl-tRNA formyltransferase compare
AO353_14395 -0.7 -2.7 poly(A) polymerase compare
AO353_05420 -0.7 -1.3 peptide chain release factor 3 compare
AO353_21630 -0.7 -1.9 precorrin-4 C11-methyltransferase compare
AO353_20800 -0.7 -1.4 hypothetical protein compare
AO353_05075 -0.7 -4.7 adenylylsulfate kinase compare
AO353_16940 -0.7 -3.0 deoxycytidine triphosphate deaminase compare
AO353_04220 -0.7 -2.8 chemotaxis protein CheY compare
AO353_11850 -0.7 -2.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_18325 -0.7 -1.6 hypothetical protein compare
AO353_09320 -0.7 -4.4 ATP-dependent DNA helicase RecG compare
AO353_22580 -0.7 -2.2 3-demethylubiquinone-9 3-methyltransferase compare
AO353_25640 -0.7 -1.7 AsnC family transcriptional regulator compare
AO353_12455 -0.7 -2.4 nuclease compare
AO353_03205 -0.7 -2.8 dehydrogenase compare
AO353_26045 -0.7 -1.6 hypothetical protein compare
AO353_02810 -0.7 -3.7 histidine kinase compare
AO353_16425 -0.7 -0.8 Fe-S metabolism protein SufE compare
AO353_17935 -0.7 -1.8 hypothetical protein compare
AO353_10435 -0.7 -3.9 chromosome partitioning protein compare
AO353_20185 -0.7 -2.9 DNA-binding protein compare
AO353_01995 -0.7 -4.8 hypothetical protein compare
AO353_12015 -0.7 -1.7 antitoxin compare
AO353_12690 -0.6 -0.9 acyl carrier protein compare
AO353_09235 -0.6 -3.2 phosphoglucomutase compare
AO353_28485 -0.6 -1.7 LysR family transcriptional regulator compare
AO353_09340 -0.6 -2.0 hypothetical protein compare
AO353_24120 -0.6 -1.7 hypothetical protein compare
AO353_04190 -0.6 -1.3 glycerol-3-phosphate dehydrogenase compare
AO353_07075 -0.6 -2.3 elongation factor Tu compare
AO353_08045 -0.6 -5.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_13220 -0.6 -3.3 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source L-Lysine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Lysine across organisms