Experiment set6IT083 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Green bean; 6 days

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -6.7 -3.5 anthranilate synthase, component II compare
Psyr_4270 -5.2 -8.0 serine hydroxymethyltransferase compare
Psyr_1668 -4.4 -6.0 amidophosphoribosyltransferase compare
Psyr_0531 -4.3 -3.0 LmbE-like protein compare
Psyr_0951 -4.3 -4.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1269 -4.3 -3.0 phosphoribosylformylglycinamidine synthase compare
Psyr_1669 -4.3 -11.0 O-succinylhomoserine sulfhydrylase compare
Psyr_0474 -4.3 -11.9 homoserine O-acetyltransferase compare
Psyr_4580 -4.2 -4.1 anthranilate phosphoribosyltransferase compare
Psyr_1663 -4.2 -2.9 phosphoribosylanthranilate isomerase compare
Psyr_4407 -4.1 -4.0 phosphoribosylamine--glycine ligase compare
Psyr_0378 -4.1 -10.1 Glycosyl transferase, family 2 compare
Psyr_4740 -4.0 -6.6 thiazole-phosphate synthase compare
Psyr_1056 -4.0 -5.9 Poly(beta-D-mannuronate) lyase compare
Psyr_4609 -4.0 -16.2 anthranilate synthase, component I compare
Psyr_4203 -3.9 -2.7 SsrA-binding protein compare
Psyr_0219 -3.9 -10.3 phosphomannomutase compare
Psyr_0529 -3.9 -6.4 Glycosyl transferase, group 1 compare
Psyr_0915 -3.7 -13.1 NAD-dependent epimerase/dehydratase compare
Psyr_1748 -3.6 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0377 -3.5 -9.6 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_3008 -3.5 -7.6 Undecaprenyl-diphosphatase compare
Psyr_3958 -3.4 -13.4 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_1613 -3.4 -5.6 septum site-determining protein MinC compare
Psyr_4369 -3.4 -7.7 glutamate-5-semialdehyde dehydrogenase compare
Psyr_1984 -3.3 -3.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_1212 -3.3 -3.5 type III secretion protein HrpO compare
Psyr_0917 -3.3 -7.6 ABC-2 compare
Psyr_0918 -3.3 -13.4 ABC transporter compare
Psyr_1985 -3.2 -10.5 3-isopropylmalate dehydrogenase compare
Psyr_1350 -3.2 -4.6 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4341 -3.2 -9.0 thiamine-phosphate diphosphorylase compare
Psyr_1544 -3.2 -6.0 SirA-like protein compare
Psyr_4144 -3.2 -1.2 Protein of unknown function DUF1239 compare
Psyr_3886 -3.1 -2.5 methionyl-tRNA synthetase compare
Psyr_0827 -3.1 -4.8 pantothenate synthetase compare
Psyr_4687 -3.1 -6.6 biotin synthase compare
Psyr_0826 -3.1 -7.6 glucose-6-phosphate isomerase compare
Psyr_4683 -3.1 -3.0 dethiobiotin synthase compare
Psyr_4686 -3.1 -7.7 8-amino-7-oxononanoate synthase compare
Psyr_4132 -3.0 -10.2 histidinol phosphate aminotransferase apoenzyme compare
Psyr_4340 -3.0 -9.2 phosphomethylpyrimidine kinase, putative compare
Psyr_0268 -2.9 -3.1 DSBA oxidoreductase compare
Psyr_4894 -2.8 -5.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4133 -2.8 -13.2 histidinol dehydrogenase compare
Psyr_1983 -2.8 -6.2 3-isopropylmalate dehydratase, large subunit compare
Psyr_4897 -2.7 -5.3 imidazoleglycerol-phosphate dehydratase compare
Psyr_0014 -2.7 -5.4 lipid A biosynthesis acyltransferase compare
Psyr_1410 -2.7 -5.5 Holliday junction DNA helicase RuvB compare
Psyr_0473 -2.7 -5.5 Methionine biosynthesis MetW compare
Psyr_4893 -2.7 -2.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0846 -2.6 -11.8 acetolactate synthase, large subunit compare
Psyr_4134 -2.5 -9.6 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4408 -2.5 -8.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0936 -2.5 -10.1 Glycosyl transferase, group 1 compare
Psyr_4512 -2.5 -7.4 putative phage-related protein compare
Psyr_4991 -2.5 -3.5 hypothetical protein compare
Psyr_1614 -2.5 -3.3 lipid A biosynthesis acyltransferase compare
Psyr_0923 -2.5 -7.2 hypothetical protein compare
Psyr_4852 -2.5 -5.4 D-3-phosphoglycerate dehydrogenase compare
Psyr_0919 -2.4 -11.2 Chromosome segregation ATPase-like protein compare
Psyr_1373 -2.4 -1.6 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_5132 -2.4 -3.7 Glucose-inhibited division protein A subfamily compare
Psyr_2980 -2.3 -4.3 UDP-glucose pyrophosphorylase compare
Psyr_0914 -2.3 -9.7 Glycosyl transferase, group 1 compare
Psyr_0576 -2.3 -3.6 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_0532 -2.3 -5.9 conserved hypothetical protein compare
Psyr_0454 -2.3 -5.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_3179 -2.3 -4.1 DNA translocase FtsK compare
Psyr_4684 -2.2 -3.2 biotin synthesis protein BioC compare
Psyr_0920 -2.1 -14.0 Glycosyl transferase, group 1 compare
Psyr_4130 -2.1 -10.5 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_4362 -2.1 -2.7 Rare lipoprotein A compare
Psyr_3791 -2.1 -3.1 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_3637 -2.1 -9.4 Glycosyl transferase, family 4 compare
Psyr_1140 -2.1 -3.5 Disulfide bond formation protein DsbB compare
Psyr_0534 -2.1 -11.3 membrane protein, putative compare
Psyr_1211 -2.1 -6.4 type III secretion protein HrpP compare
Psyr_0704 -2.0 -5.6 glutamate 5-kinase compare
Psyr_1408 -2.0 -2.4 Holliday junction endonuclease RuvC compare
Psyr_3013 -2.0 -1.4 magnesium chelatase subunit ChlD compare
Psyr_0469 -1.9 -6.8 dihydroxyacid dehydratase compare
Psyr_4896 -1.9 -4.0 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0549 -1.9 -1.5 Metallophosphoesterase compare
Psyr_4087 -1.9 -1.5 Protein of unknown function DUF520 compare
Psyr_1257 -1.8 -6.4 2-isopropylmalate synthase compare
Psyr_4136 -1.8 -2.0 BolA-like protein compare
Psyr_0167 -1.8 -2.1 hypothetical protein compare
Psyr_3287 -1.8 -2.0 DNA topoisomerase I compare
Psyr_0386 -1.7 -2.5 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0081 -1.7 -1.6 ABC transporter compare
Psyr_4018 -1.7 -6.4 Formyltetrahydrofolate deformylase compare
Psyr_0557 -1.7 -4.3 phosphoserine phosphatase compare
Psyr_3184 -1.7 -2.8 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_0796 -1.7 -4.8 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A compare
Psyr_4194 -1.7 -4.3 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0848 -1.7 -5.8 ketol-acid reductoisomerase compare
Psyr_0033 -1.6 -2.2 tryptophan synthase, alpha chain compare
Psyr_3698 -1.6 -3.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_2461 -1.6 -2.9 Uncharacterized conserved protein UCP030820 compare
Psyr_0916 -1.6 -7.8 GDP-mannose 4,6-dehydratase compare
Psyr_1395 -1.6 -4.9 virulence compare
Psyr_0475 -1.6 -2.9 Protein of unknown function YGGT compare
Psyr_0528 -1.6 -2.7 Carbamoyltransferase compare
Psyr_3636 -1.6 -8.1 Polysaccharide biosynthesis protein CapD compare
Psyr_1213 -1.6 -6.0 type III secretion cytoplasmic ATPase HrcN compare
Psyr_4460 -1.6 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_1864 -1.5 -4.6 spermidine synthase compare
Psyr_4015 -1.5 -2.1 conserved domain protein compare
Psyr_3852 -1.5 -3.4 lipoprotein SlyB, putative compare
Psyr_4842 -1.5 -4.4 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_0437 -1.5 -1.5 acyl carrier protein, putative compare
Psyr_1642 -1.5 -1.9 Maf-like protein compare
Psyr_4716 -1.5 -2.6 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_2613 -1.5 -4.3 Cyclic peptide transporter compare
Psyr_0976 -1.4 -4.5 Malate:quinone-oxidoreductase compare
Psyr_4363 -1.4 -4.7 membrane-bound lytic murein transglycosylase B compare
Psyr_0758 -1.4 -9.2 beta-fructofuranosidase compare
Psyr_5067 -1.4 -4.9 conserved hypothetical protein compare
Psyr_1747 -1.4 -3.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2620 -1.4 -2.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1197 -1.4 -4.0 type III secretion protein HrpE compare
Psyr_2617 -1.4 -2.6 Secretion protein HlyD compare
Psyr_3466 -1.4 -1.9 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_3638 -1.4 -2.9 UDP-glucose 4-epimerase, putative compare
Psyr_2221 -1.4 -1.9 sarcosine oxidase, gamma subunit compare
Psyr_1193 -1.4 -1.2 type III helper protein HrpZ1 compare
Psyr_3676 -1.4 -3.1 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_0680 -1.4 -2.3 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0847 -1.4 -3.4 acetolactate synthase, small subunit compare
Psyr_3889 -1.3 -2.0 conserved hypothetical protein compare
Psyr_3841 -1.3 -1.9 conserved hypothetical protein compare
Psyr_0184 -1.3 -2.7 Protein of unknown function DUF484 compare
Psyr_0137 -1.3 -1.7 outer membrane transport energization protein ExbD compare
Psyr_2927 -1.3 -1.7 transcriptional regulator, TetR family compare
Psyr_1215 -1.3 -5.6 Type III secretion protein HrcV compare
Psyr_4091 -1.3 -3.0 8-oxo-dGTPase compare
Psyr_2489 -1.3 -4.8 Alpha amylase, catalytic region compare
Psyr_5135 -1.3 -1.6 Protein of unknown function DUF37 compare
Psyr_5133 -1.3 -3.4 tRNA modification GTPase trmE compare
Psyr_4278 -1.3 -2.2 regulatory protein, LuxR compare
Psyr_4940 -1.3 -2.4 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_2930 -1.3 -2.1 Glyoxalase/bleomycin resistance protein/dioxygenase compare
Psyr_4158 -1.3 -5.8 conserved hypothetical protein compare
Psyr_2067 -1.3 -2.2 ABC transporter compare
Psyr_5130 -1.2 -5.2 chromosome segregation ATPase compare
Psyr_1268 -1.2 -4.1 extracellular solute-binding protein, family 3:SLT compare
Psyr_0815 -1.2 -3.3 nicotinate-nucleotide pyrophosphorylase (carboxylating) compare
Psyr_1208 -1.2 -6.8 type III secretion protein HrcR compare
Psyr_3425 -1.2 -2.2 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_5065 -1.2 -5.5 ATP-dependent DNA helicase UvrD compare
Psyr_3014 -1.2 -2.5 protoporphyrin IX magnesium-chelatase compare
Psyr_1055 -1.2 -7.8 Membrane bound O-acyl transferase, MBOAT compare
Psyr_1121 -1.2 -1.4 6-phosphogluconolactonase compare
Psyr_2601 -1.2 -4.5 regulatory protein, LuxR compare
Psyr_3146 -1.2 -2.0 general secretion pathway protein J, putative compare
Psyr_1053 -1.2 -4.5 alginate biosynthesis protein AlgF compare
Psyr_3133 -1.2 -1.7 Amidohydrolase 2 compare
Psyr_4566 -1.2 -5.7 Peptidase M23B compare
Psyr_3842 -1.2 -3.7 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_2318 -1.2 -3.0 CDS compare
Psyr_4068 -1.2 -2.6 conserved hypothetical protein compare
Psyr_2077 -1.1 -3.5 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1210 -1.1 -2.4 type III secretion protein HrcQa compare
Psyr_0535 -1.1 -2.3 toluene tolerance protein, putative compare
Psyr_2245 -1.1 -2.0 conserved domain protein compare
Psyr_2031 -1.1 -2.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1097 -1.1 -1.3 glycine cleavage system H protein compare
Psyr_3691 -1.1 -3.2 conserved hypothetical protein compare
Psyr_3369 -1.1 -2.5 Twin-arginine translocation pathway signal:Tat-translocated enzyme:Dyp-type peroxidase compare
Psyr_3690 -1.1 -3.2 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_3281 -1.1 -2.5 Glycoside hydrolase, family 3, N-terminal compare
Psyr_1645 -1.1 -2.7 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_0822 -1.1 -1.6 1-phosphofructokinase compare
Psyr_4995 -1.1 -2.3 RHS protein compare
Psyr_1205 -1.1 -5.1 type III secretion protein HrcU compare
Psyr_0524 -1.1 -2.6 Lipopolysaccharide kinase compare
Psyr_4007 -1.1 -5.5 Secretion protein HlyD compare
Psyr_0356 -1.1 -0.9 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_1650 -1.1 -2.1 aminodeoxychorismate lyase apoprotein compare
Psyr_0635 -1.1 -1.5 MaoC-like dehydratase compare
Psyr_2474 -1.1 -2.3 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_3677 -1.0 -2.0 Aminotransferase, class I and II compare
Psyr_0025 -1.0 -2.3 shikimate dehydrogenase compare
Psyr_4882 -1.0 -4.3 protein translocase subunit secB compare
Psyr_1040 -1.0 -2.6 RNA polymerase sigma factor, ECF subfamily compare
Psyr_3739 -1.0 -1.5 conserved hypothetical protein compare
Psyr_3151 -1.0 -3.3 type II secretion system protein E (GspE) compare
Psyr_1216 -1.0 -5.1 type III secretion outer membrane protein PopN compare
Psyr_1783 -1.0 -2.1 CDS compare
Psyr_3673 -1.0 -1.1 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_0270 -1.0 -2.4 DNA polymerase I compare
Psyr_3512 -1.0 -2.7 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1719 -1.0 -1.5 conserved hypothetical protein compare
Psyr_1218 -1.0 -5.6 type III helper protein HrpK1 compare
Psyr_4887 -1.0 -5.0 Peptidase S41A, C-terminal protease compare
Psyr_0199 -1.0 -2.0 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_4920 -1.0 -1.3 conserved hypothetical bacteriophage protein compare
Psyr_3955 -1.0 -2.4 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_4498 -1.0 -1.4 outer membrane transport energization protein ExbD compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments