Experiment set6IT083 for Methanococcus maripaludis S2

Compare to:

formate N-free with 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -4.5 -6.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08300 -4.3 -2.6 metal-sulfur cluster assembly factor compare
MMP_RS05500 -4.2 -11.9 2-isopropylmalate synthase compare
MMP_RS03435 -4.2 -3.2 ketol-acid reductoisomerase compare
MMP_RS03450 -4.1 -3.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS07345 -4.1 -10.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS03015 -4.0 -15.8 GTP 3' 8-cyclase MoaA compare
MMP_RS00300 -3.9 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06350 -3.9 -11.2 HesA/MoeB/ThiF family protein compare
MMP_RS07730 -3.9 -3.8 pyruvate synthase subunit beta compare
MMP_RS06355 -3.9 -5.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06680 -3.9 -21.9 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05930 -3.8 -4.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS05550 -3.6 -1.2 cation:proton antiporter compare
MMP_RS06715 -3.6 -25.5 cache domain-containing protein compare
MMP_RS06685 -3.5 -15.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS05515 -3.5 -8.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07635 -3.4 -11.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01455 -3.4 -13.5 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06720 -3.3 -12.9 response regulator transcription factor compare
MMP_RS07845 -3.3 -4.8 LL-diaminopimelate aminotransferase compare
MMP_RS06700 -3.3 -18.6 hypothetical protein compare
MMP_RS06345 -3.2 -14.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS02010 -3.2 -16.0 PHP domain-containing protein compare
MMP_RS04215 -3.2 -14.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01500 -3.1 -3.6 CBS domain-containing protein compare
MMP_RS09020 -3.1 -2.6 hypothetical protein compare
MMP_RS05875 -3.1 -9.8 hydroxyethylthiazole kinase compare
MMP_RS06270 -3.1 -6.8 TIGR00300 family protein compare
MMP_RS04900 -3.1 -24.5 hypothetical protein compare
MMP_RS06375 -3.1 -11.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01005 -3.1 -1.9 riboflavin synthase compare
MMP_RS03600 -3.0 -3.9 triose-phosphate isomerase compare
MMP_RS06175 -3.0 -14.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS07185 -3.0 -17.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06705 -2.9 -14.9 formate/nitrite transporter family protein compare
MMP_RS05265 -2.9 -3.6 2-isopropylmalate synthase compare
MMP_RS07735 -2.9 -1.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05555 -2.8 -2.5 DUF4040 domain-containing protein compare
MMP_RS07445 -2.8 -8.3 helix-turn-helix domain-containing protein compare
MMP_RS04615 -2.8 -7.9 PDGLE domain-containing protein compare
MMP_RS04605 -2.8 -8.2 cobalt ECF transporter T component CbiQ compare
MMP_RS03035 -2.8 -6.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01545 -2.7 -1.9 CBS domain-containing protein compare
MMP_RS07365 -2.7 -15.3 2-phosphoglycerate kinase compare
MMP_RS03475 -2.7 -1.1 hypothetical protein compare
MMP_RS06925 -2.7 -4.5 ribonuclease VapC4 compare
MMP_RS03640 -2.7 -7.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS00295 -2.6 -4.2 gamma carbonic anhydrase family protein compare
MMP_RS08820 -2.6 -9.1 hypothetical protein compare
MMP_RS05425 -2.6 -6.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS08745 -2.6 -8.7 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS02280 -2.6 -1.6 DUF211 domain-containing protein compare
MMP_RS01020 -2.5 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01985 -2.5 -12.0 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08460 -2.4 -4.0 proteasome-activating nucleotidase compare
MMP_RS07630 -2.4 -3.0 ATP-binding cassette domain-containing protein compare
MMP_RS06105 -2.4 -7.8 hydrogenase maturation peptidase HycI compare
MMP_RS04870 -2.3 -6.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS04620 -2.3 -13.5 cobalt transporter CbiM compare
MMP_RS08165 -2.3 -3.6 phosphoglycerate dehydrogenase compare
MMP_RS04780 -2.3 -4.0 ribonuclease P compare
MMP_RS04585 -2.2 -12.6 AIR synthase related protein compare
MMP_RS09055 -2.2 -1.8 CAP domain-containing protein compare
MMP_RS00040 -2.2 -5.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS07525 -2.2 -10.6 4Fe-4S binding protein compare
MMP_RS05765 -2.2 -10.0 M42 family metallopeptidase compare
MMP_RS02195 -2.2 -5.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06975 -2.2 -4.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS04890 -2.1 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01220 -2.1 -9.7 hypothetical protein compare
MMP_RS05085 -2.1 -13.2 AAA family ATPase compare
MMP_RS05075 -2.1 -13.8 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05090 -2.1 -10.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05080 -2.1 -12.3 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS06400 -2.1 -2.8 4Fe-4S binding protein compare
MMP_RS07575 -2.1 -7.6 RNA ligase partner protein compare
MMP_RS05095 -2.1 -8.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01610 -2.1 -5.3 hypothetical protein compare
MMP_RS02800 -2.1 -7.2 nucleotidyltransferase domain-containing protein compare
MMP_RS05060 -2.0 -14.1 AAA family ATPase compare
MMP_RS00115 -2.0 -13.4 radical SAM protein compare
MMP_RS05100 -2.0 -14.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07555 -2.0 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS01385 -2.0 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07545 -1.9 -1.7 HTH domain-containing protein compare
MMP_RS08715 -1.9 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08100 -1.9 -8.2 8-amino-7-oxononanoate synthase compare
MMP_RS02345 -1.9 -4.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06285 -1.9 -4.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06295 -1.9 -6.7 methanogenesis marker 14 protein compare
MMP_RS03025 -1.9 -6.0 molybdenum cofactor guanylyltransferase compare
MMP_RS01380 -1.8 -4.8 PHP domain-containing protein compare
MMP_RS02355 -1.8 -4.1 30S ribosomal protein S27ae compare
MMP_RS01265 -1.8 -2.7 hypothetical protein compare
MMP_RS05055 -1.8 -12.8 DUF166 domain-containing protein compare
MMP_RS03315 -1.8 -1.8 ferrous iron transport protein A compare
MMP_RS08635 -1.7 -2.7 UbiA family prenyltransferase compare
MMP_RS04500 -1.7 -13.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08330 -1.7 -7.3 NADH-quinone oxidoreductase subunit H compare
MMP_RS05065 -1.7 -6.1 CooT family nickel-binding protein compare
MMP_RS04875 -1.7 -5.9 energy-converting hydrogenase B subunit P compare
MMP_RS02340 -1.7 -3.0 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05540 -1.7 -2.6 hypothetical protein compare
MMP_RS08940 -1.7 -2.0 MetS family NSS transporter small subunit compare
MMP_RS03205 -1.6 -2.4 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS04775 -1.6 -3.7 adenosylhomocysteinase compare
MMP_RS08210 -1.6 -2.3 phosphatidylglycerophosphatase A compare
MMP_RS08720 -1.6 -2.0 4Fe-4S binding protein compare
MMP_RS01700 -1.6 -1.3 dihydroxy-acid dehydratase compare
MMP_RS08240 -1.6 -7.0 methanogenesis marker 16 metalloprotein compare
MMP_RS08105 -1.6 -6.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS08790 -1.6 -2.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS05070 -1.6 -6.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS00620 -1.6 -8.1 4Fe-4S binding protein compare
MMP_RS05245 -1.6 -7.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00555 -1.6 -5.5 MFS transporter compare
MMP_RS06200 -1.5 -7.2 M24 family metallopeptidase compare
MMP_RS07710 -1.5 -5.7 cell division protein FtsZ compare
MMP_RS01755 -1.5 -2.0 DUF2097 domain-containing protein compare
MMP_RS06340 -1.5 -7.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS03960 -1.5 -1.4 hypothetical protein compare
MMP_RS07645 -1.5 -6.2 aldehyde dehydrogenase family protein compare
MMP_RS01365 -1.5 -4.6 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS00290 -1.4 -7.4 hypothetical protein compare
MMP_RS00895 -1.4 -4.6 hypothetical protein compare
MMP_RS08095 -1.4 -5.7 dethiobiotin synthase compare
MMP_RS06370 -1.4 -5.4 biotin synthase BioB compare
MMP_RS04710 -1.4 -1.9 hypothetical protein compare
MMP_RS05845 -1.4 -1.6 tRNA-intron lyase compare
MMP_RS05430 -1.4 -5.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS00455 -1.4 -5.5 orotate phosphoribosyltransferase-like protein compare
MMP_RS03140 -1.3 -8.7 hypothetical protein compare
MMP_RS08320 -1.3 -6.2 molybdopterin molybdotransferase MoeA compare
MMP_RS07380 -1.3 -2.8 transcription elongation factor Spt5 compare
MMP_RS00305 -1.3 -2.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS01250 -1.3 -5.1 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS04790 -1.3 -8.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07580 -1.3 -3.2 DUF356 domain-containing protein compare
MMP_RS00685 -1.2 -3.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07005 -1.2 -0.8 4Fe-4S binding protein compare
MMP_RS01800 -1.2 -3.0 TIGR00303 family protein compare
MMP_RS03305 -1.2 -6.4 winged helix-turn-helix domain-containing protein compare
MMP_RS02235 -1.2 -6.4 CBS domain-containing protein compare
MMP_RS01795 -1.2 -1.7 methanogenesis marker 6 protein compare
MMP_RS08645 -1.2 -6.0 UPF0179 family protein compare
MMP_RS05925 -1.2 -4.1 small nuclear ribonucleoprotein compare
MMP_RS06475 -1.2 -3.4 FAD-dependent oxidoreductase compare
MMP_RS03145 -1.2 -4.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06020 -1.2 -4.2 archaeoflavoprotein AfpA compare
MMP_RS02165 -1.2 -4.8 tRNA-dihydrouridine synthase compare
MMP_RS03580 -1.2 -4.0 signal recognition particle-docking protein FtsY compare
MMP_RS02240 -1.2 -3.3 methanogenesis marker 7 protein compare
MMP_RS07600 -1.1 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02190 -1.1 -3.6 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01440 -1.1 -4.1 NAAT family transporter compare
MMP_RS02170 -1.1 -5.7 CBS domain-containing protein compare
MMP_RS01830 -1.1 -1.7 tRNA-Val compare
MMP_RS06855 -1.1 -6.8 hypothetical protein compare
MMP_RS07720 -1.1 -6.6 4Fe-4S binding protein compare
MMP_RS05345 -1.1 -5.5 hypothetical protein compare
MMP_RS02885 -1.1 -7.8 molybdopterin biosynthesis protein compare
MMP_RS05850 -1.1 -2.1 Ldh family oxidoreductase compare
MMP_RS06840 -1.1 -1.0 DNA-directed RNA polymerase subunit N compare
MMP_RS08615 -1.1 -2.2 flagellar protein G compare
MMP_RS03095 -1.0 -5.0 diphthine synthase compare
MMP_RS07960 -1.0 -4.9 sugar phosphate isomerase/epimerase compare
MMP_RS03080 -1.0 -1.9 universal stress protein compare
MMP_RS06130 -1.0 -3.5 peptidylprolyl isomerase compare
MMP_RS07195 -1.0 -6.1 M20 family metallo-hydrolase compare
MMP_RS05865 -1.0 -1.6 hypothetical protein compare
MMP_RS06230 -1.0 -1.7 helix-turn-helix domain-containing protein compare
MMP_RS07605 -0.9 -3.2 diadenylate cyclase compare
MMP_RS06215 -0.9 -2.8 30S ribosomal protein S6e compare
MMP_RS08435 -0.9 -1.6 Era-like GTP-binding protein compare
MMP_RS07705 -0.9 -4.5 transcriptional regulator compare
MMP_RS00515 -0.9 -0.9 DUF655 domain-containing protein compare
MMP_RS06930 -0.9 -5.6 MBL fold metallo-hydrolase compare
MMP_RS04695 -0.9 -3.5 selenide water dikinase SelD compare
MMP_RS00695 -0.9 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01225 -0.9 -3.4 DUF5379 domain-containing protein compare
MMP_RS03700 -0.9 -5.3 sodium:proton antiporter compare
MMP_RS06865 -0.9 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS01445 -0.9 -3.4 hypothetical protein compare
MMP_RS01195 -0.9 -1.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03485 -0.9 -2.2 TIGR00267 family protein compare
MMP_RS02930 -0.9 -2.3 class I SAM-dependent methyltransferase compare
MMP_RS07755 -0.9 -1.2 DUF555 domain-containing protein compare
MMP_RS07535 -0.9 -4.9 4Fe-4S binding protein compare
MMP_RS03445 -0.8 -0.9 methanogenesis marker 17 protein compare
MMP_RS02135 -0.8 -3.6 DUF5612 domain-containing protein compare
MMP_RS03520 -0.8 -0.9 YwbE family protein compare
MMP_RS02145 -0.8 -4.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS07685 -0.8 -3.6 TIGR01212 family radical SAM protein compare
MMP_RS00750 -0.8 -1.6 fumarate hydratase compare
MMP_RS07390 -0.8 -2.1 cell division protein FtsZ compare
MMP_RS05250 -0.8 -1.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS03400 -0.8 -2.1 archease compare
MMP_RS04125 -0.8 -2.1 TetR/AcrR family transcriptional regulator compare
MMP_RS05505 -0.8 -4.8 class IV adenylate cyclase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms