Experiment set6IT083 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -7.7 -4.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -6.6 -4.6 NUDIX domain-containing protein compare
ABZR87_RS05100 -6.4 -9.5 RNA polymerase-binding protein DksA compare
ABZR87_RS07355 -5.2 -7.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS08695 -5.1 -17.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS16885 -5.1 -2.3 hypothetical protein compare
ABZR87_RS00970 -4.9 -2.9 molecular chaperone DnaJ compare
ABZR87_RS03420 -4.5 -1.2 type II secretion system minor pseudopilin GspI compare
ABZR87_RS02550 -4.5 -5.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS04975 -4.5 -5.1 peptide deformylase compare
ABZR87_RS08630 -4.3 -7.8 dihydroorotase compare
ABZR87_RS09500 -3.9 -6.8 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS02555 -3.9 -6.5 ABC transporter ATP-binding protein compare
ABZR87_RS08625 -3.8 -2.7 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS01855 -3.8 -12.6 A24 family peptidase compare
ABZR87_RS02545 -3.5 -7.8 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS02850 -3.4 -2.4 elongation factor Tu compare
ABZR87_RS02445 -3.4 -6.1 Sec-independent protein translocase protein TatB compare
ABZR87_RS02540 -3.4 -6.2 VacJ family lipoprotein compare
ABZR87_RS16165 -3.4 -0.9 anti-sigma factor compare
ABZR87_RS00435 -3.3 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS02535 -3.3 -6.6 phospholipid-binding protein MlaC compare
ABZR87_RS01980 -3.2 -3.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS02590 -3.2 -9.7 3-dehydroquinate synthase compare
ABZR87_RS11245 -3.2 -4.8 translational GTPase TypA compare
ABZR87_RS01225 -3.1 -3.0 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS08750 -3.1 -8.6 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS02145 -3.0 -2.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS12785 -3.0 -3.5 endopeptidase La compare
ABZR87_RS22830 -3.0 -2.0 Crp/Fnr family transcriptional regulator compare
ABZR87_RS07735 -3.0 -3.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS04865 -2.9 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS14535 -2.9 -4.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS20555 -2.9 -3.4 helix-turn-helix transcriptional regulator compare
ABZR87_RS07035 -2.9 -6.2 RNase adapter RapZ compare
ABZR87_RS10980 -2.9 -1.1 tRNA-Leu compare
ABZR87_RS10085 -2.9 -1.5 Rne/Rng family ribonuclease compare
ABZR87_RS14965 -2.9 -4.1 DUF3619 family protein compare
ABZR87_RS09615 -2.9 -1.2 50S ribosomal protein L19 compare
ABZR87_RS17650 -2.8 -9.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03435 -2.8 -7.6 type II secretion system protein GspL compare
ABZR87_RS01675 -2.8 -3.8 carbohydrate kinase family protein compare
ABZR87_RS03410 -2.8 -10.0 type II secretion system major pseudopilin GspG compare
ABZR87_RS14890 -2.8 -1.1 preprotein translocase subunit SecG compare
ABZR87_RS13790 -2.7 -8.8 chorismate synthase compare
ABZR87_RS03440 -2.7 -5.5 type II secretion system protein GspM compare
ABZR87_RS07625 -2.7 -1.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS14490 -2.7 -10.7 tryptophan synthase subunit alpha compare
ABZR87_RS10170 -2.6 -4.4 RseA family anti-sigma factor compare
ABZR87_RS02640 -2.6 -9.4 diaminopimelate decarboxylase compare
ABZR87_RS04940 -2.5 -5.6 PAS domain-containing sensor histidine kinase compare
ABZR87_RS05590 -2.5 -2.4 orotate phosphoribosyltransferase compare
ABZR87_RS01085 -2.5 -4.6 rhombosortase compare
ABZR87_RS07665 -2.5 -9.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS03460 -2.5 -9.5 type II secretion system inner membrane protein GspF compare
ABZR87_RS07380 -2.4 -14.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02570 -2.4 -17.3 glutamate synthase-related protein compare
ABZR87_RS02440 -2.4 -9.5 twin-arginine translocase subunit TatC compare
ABZR87_RS12800 -2.4 -5.1 trigger factor compare
ABZR87_RS02155 -2.4 -6.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS08970 -2.3 -3.6 protein TolQ compare
ABZR87_RS03450 -2.3 -12.7 type II secretion system secretin GspD compare
ABZR87_RS02320 -2.3 -2.2 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS22340 -2.3 -1.5 hypothetical protein compare
ABZR87_RS21815 -2.3 -1.1 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS03075 -2.3 -9.3 AGE family epimerase/isomerase compare
ABZR87_RS06845 -2.3 -8.1 heme o synthase compare
ABZR87_RS03430 -2.3 -8.9 type II secretion system minor pseudopilin GspK compare
ABZR87_RS19010 -2.2 -2.4 acyloxyacyl hydrolase compare
ABZR87_RS13475 -2.2 -3.1 PAS domain S-box protein compare
ABZR87_RS05305 -2.2 -8.2 TetR family transcriptional regulator compare
ABZR87_RS09895 -2.2 -1.3 DUF1841 family protein compare
ABZR87_RS14500 -2.2 -10.7 tryptophan synthase subunit beta compare
ABZR87_RS01035 -2.2 -5.9 histidine utilization repressor compare
ABZR87_RS12345 -2.2 -0.8 dethiobiotin synthase compare
ABZR87_RS02595 -2.2 -9.3 shikimate kinase compare
ABZR87_RS06385 -2.1 -7.5 CHASE3 domain-containing protein compare
ABZR87_RS02375 -2.1 -9.2 cytochrome c1 compare
ABZR87_RS02385 -2.1 -5.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS15405 -2.1 -2.9 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS05130 -2.1 -0.8 CsbD family protein compare
ABZR87_RS06350 -2.1 -11.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS02565 -2.1 -4.1 glutamate synthase subunit beta compare
ABZR87_RS09465 -2.1 -6.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS06400 -2.1 -4.3 response regulator transcription factor compare
ABZR87_RS00795 -2.1 -1.4 site-specific tyrosine recombinase XerD compare
ABZR87_RS02655 -2.0 -9.2 anti-sigma factor compare
ABZR87_RS05065 -2.0 -3.1 tyrosine recombinase XerC compare
ABZR87_RS08700 -2.0 -6.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS09505 -2.0 -5.2 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS01685 -2.0 -3.9 histone H1-like DNA-binding protein compare
ABZR87_RS16735 -2.0 -12.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS13285 -2.0 -8.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01745 -2.0 -4.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS08985 -2.0 -6.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS14665 -1.9 -1.0 histidine phosphatase family protein compare
ABZR87_RS03455 -1.9 -8.8 type II secretion system ATPase GspE compare
ABZR87_RS16820 -1.9 -5.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS00875 -1.9 -4.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS13645 -1.9 -0.7 hypothetical protein compare
ABZR87_RS14530 -1.9 -7.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS06840 -1.9 -6.8 COX15/CtaA family protein compare
ABZR87_RS14540 -1.8 -6.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS05200 -1.8 -11.7 homoserine O-acetyltransferase compare
ABZR87_RS22585 -1.8 -1.3 methyl-accepting chemotaxis protein compare
ABZR87_RS18630 -1.8 -1.6 class II fumarate hydratase compare
ABZR87_RS14605 -1.8 -7.6 aconitate hydratase AcnA compare
ABZR87_RS07360 -1.8 -9.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS10610 -1.8 -0.9 inositol monophosphatase family protein compare
ABZR87_RS13250 -1.8 -1.9 phosphoserine phosphatase SerB compare
ABZR87_RS07760 -1.8 -2.3 HlyC/CorC family transporter compare
ABZR87_RS10800 -1.8 -1.9 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS01450 -1.8 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS03415 -1.8 -7.5 GspH/FimT family pseudopilin compare
ABZR87_RS16960 -1.8 -3.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS09515 -1.8 -1.0 cysteine synthase CysM compare
ABZR87_RS05570 -1.7 -8.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS05060 -1.7 -3.9 DUF484 family protein compare
ABZR87_RS18695 -1.7 -7.1 sugar-binding transcriptional regulator compare
ABZR87_RS01690 -1.7 -0.8 collagen-like triple helix repeat-containing protein compare
ABZR87_RS09445 -1.7 -9.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS11435 -1.7 -2.6 Mth938-like domain-containing protein compare
ABZR87_RS02325 -1.7 -3.7 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS16860 -1.7 -2.0 response regulator compare
ABZR87_RS06745 -1.7 -6.6 S41 family peptidase compare
ABZR87_RS15715 -1.7 -5.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS03445 -1.7 -5.8 type II secretion system protein N compare
ABZR87_RS11815 -1.6 -7.5 [protein-PII] uridylyltransferase compare
ABZR87_RS20880 -1.6 -5.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS14510 -1.6 -3.2 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS05645 -1.6 -1.6 SDR family oxidoreductase compare
ABZR87_RS04995 -1.6 -2.0 DNA topoisomerase III compare
ABZR87_RS20690 -1.6 -1.2 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS09450 -1.6 -5.5 prephenate dehydratase compare
ABZR87_RS06395 -1.6 -6.5 response regulator compare
ABZR87_RS22970 -1.6 -7.9 cystathionine gamma-synthase family protein compare
ABZR87_RS01615 -1.6 -1.1 RNB domain-containing ribonuclease compare
ABZR87_RS02140 -1.6 -10.0 anthranilate synthase component I compare
ABZR87_RS06855 -1.6 -3.1 RNA polymerase sigma factor RpoH compare
ABZR87_RS06495 -1.5 -1.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS16125 -1.5 -5.7 heme biosynthesis protein HemY compare
ABZR87_RS03565 -1.5 -6.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13175 -1.5 -1.3 tRNA-Leu compare
ABZR87_RS15485 -1.5 -6.4 glycosyltransferase family 2 protein compare
ABZR87_RS01645 -1.5 -5.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS03780 -1.5 -1.0 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS08660 -1.5 -1.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS01275 -1.5 -2.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS16270 -1.5 -1.6 cold-shock protein compare
ABZR87_RS03425 -1.5 -3.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS05350 -1.5 -1.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS07700 -1.5 -1.0 peptidylprolyl isomerase compare
ABZR87_RS13300 -1.5 -5.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS16730 -1.5 -5.6 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS01885 -1.5 -2.9 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS07510 -1.4 -1.9 LysR family transcriptional regulator compare
ABZR87_RS10190 -1.4 -5.7 translation elongation factor 4 compare
ABZR87_RS16185 -1.4 -0.8 dCTP deaminase compare
ABZR87_RS11495 -1.4 -1.2 NADPH-dependent FMN reductase compare
ABZR87_RS01280 -1.4 -3.1 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS22920 -1.4 -2.6 phosphogluconate dehydratase compare
ABZR87_RS02380 -1.4 -7.0 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS13415 -1.4 -3.8 IclR family transcriptional regulator compare
ABZR87_RS06645 -1.4 -0.9 TlpA disulfide reductase family protein compare
ABZR87_RS09625 -1.4 -7.3 CobD/CbiB family protein compare
ABZR87_RS21950 -1.4 -4.4 hypothetical protein compare
ABZR87_RS23235 -1.3 -5.3 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS02160 -1.3 -2.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS11195 -1.3 -5.7 pseudouridine synthase compare
ABZR87_RS17910 -1.3 -6.1 IclR family transcriptional regulator compare
ABZR87_RS07705 -1.3 -1.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS16170 -1.3 -0.9 argininosuccinate lyase compare
ABZR87_RS17145 -1.3 -5.8 AMP nucleosidase compare
ABZR87_RS08670 -1.3 -6.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS14505 -1.3 -2.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS07060 -1.3 -8.4 RNA polymerase factor sigma-54 compare
ABZR87_RS10230 -1.3 -3.0 beta-N-acetylhexosaminidase compare
ABZR87_RS01640 -1.3 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS14080 -1.3 -4.0 phosphate signaling complex protein PhoU compare
ABZR87_RS11440 -1.2 -5.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS23265 -1.2 -1.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS11070 -1.2 -5.8 nitrogen regulation protein NR(I) compare
ABZR87_RS12955 -1.2 -4.4 terminase endonuclease subunit compare
ABZR87_RS12970 -1.2 -1.9 putative holin compare
ABZR87_RS02220 -1.2 -5.2 redox-regulated ATPase YchF compare
ABZR87_RS07730 -1.2 -2.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS11015 -1.2 -3.5 amino-acid N-acetyltransferase compare
ABZR87_RS00205 -1.2 -2.0 DUF934 domain-containing protein compare
ABZR87_RS04945 -1.2 -1.4 DUF4390 domain-containing protein compare
ABZR87_RS12960 -1.2 -1.0 head completion/stabilization protein compare
ABZR87_RS07620 -1.2 -1.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS15665 -1.2 -4.8 ZIP family metal transporter compare
ABZR87_RS09710 -1.2 -1.9 tRNA-Arg compare
ABZR87_RS01270 -1.2 -4.5 ATP-dependent DNA helicase RecG compare
ABZR87_RS16660 -1.2 -2.5 helix-turn-helix domain-containing protein compare
ABZR87_RS13315 -1.2 -6.4 RluA family pseudouridine synthase compare
ABZR87_RS07005 -1.2 -1.2 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS12795 -1.2 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS20985 -1.2 -2.2 hypothetical protein compare
ABZR87_RS10400 -1.1 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in in planta experiments

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms