Experiment set6IT082 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Histidine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.7 -6.4 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -4.3 -4.2 3-isopropylmalate dehydratase compare
AO353_02070 -4.3 -7.7 prephenate dehydratase compare
AO353_20665 -4.2 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08185 -4.2 -9.7 methionine biosynthesis protein MetW compare
AO353_07230 -4.1 -14.9 anthranilate synthase compare
AO353_20540 -4.1 -8.6 aromatic amino acid aminotransferase compare
AO353_10670 -4.0 -7.2 shikimate dehydrogenase compare
AO353_20620 -4.0 -8.0 isopropylmalate isomerase compare
AO353_12235 -4.0 -13.4 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) conserved
AO353_20635 -4.0 -13.1 3-isopropylmalate dehydrogenase compare
AO353_12285 -3.9 -11.5 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
AO353_08345 -3.9 -7.9 dihydroxy-acid dehydratase compare
AO353_22800 -3.8 -3.7 sulfite reductase compare
AO353_07215 -3.8 -8.1 anthranilate phosphoribosyltransferase compare
AO353_14505 -3.8 -12.0 ketol-acid reductoisomerase compare
AO353_08180 -3.7 -13.6 homoserine O-acetyltransferase compare
AO353_08685 -3.7 -8.2 N-acetylglutamate synthase compare
AO353_14220 -3.6 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_07220 -3.4 -9.1 anthranilate synthase compare
AO353_02075 -3.4 -11.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00310 -3.3 -10.3 transaldolase compare
AO353_07210 -3.3 -6.9 indole-3-glycerol-phosphate synthase compare
AO353_09285 -3.2 -12.2 reactive intermediate/imine deaminase compare
AO353_09240 -3.2 -3.1 acetylglutamate kinase compare
AO353_13070 -3.2 -8.2 phosphoserine phosphatase compare
AO353_04355 -3.1 -3.0 homoserine dehydrogenase compare
AO353_10710 -3.1 -5.5 tryptophan synthase subunit beta compare
AO353_12280 -3.1 -11.3 Imidazolonepropionase (EC 3.5.2.7) (from data) conserved
AO353_04105 -3.1 -9.6 argininosuccinate synthase compare
AO353_14495 -3.1 -11.6 acetolactate synthase 3 catalytic subunit compare
AO353_03360 -3.1 -9.7 glucose-6-phosphate dehydrogenase compare
AO353_19060 -2.9 -6.7 CysB family transcriptional regulator compare
AO353_04155 -2.9 -13.1 ornithine carbamoyltransferase compare
AO353_15925 -2.9 -12.2 2-isopropylmalate synthase compare
AO353_13100 -2.9 -2.8 GTPase RsgA compare
AO353_08780 -2.9 -9.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08510 -2.9 -5.1 3-phosphoglycerate dehydrogenase compare
AO353_02595 -2.9 -4.7 cobalamin synthase compare
AO353_12500 -2.9 -1.9 shikimate kinase compare
AO353_14115 -2.8 -7.4 gamma-glutamyl kinase compare
AO353_07525 -2.8 -14.9 biotin synthase compare
AO353_12515 -2.8 -19.7 glutamate synthase compare
AO353_03615 -2.7 -3.2 cold-shock protein compare
AO353_02250 -2.7 -4.1 chorismate synthase compare
AO353_10035 -2.7 -9.6 LysR family transcriptional regulator compare
AO353_03710 -2.7 -3.6 formyltetrahydrofolate deformylase compare
AO353_07155 -2.6 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14500 -2.6 -8.0 acetolactate synthase 3 regulatory subunit compare
AO353_11730 -2.6 -11.0 glutamate--cysteine ligase compare
AO353_12520 -2.6 -11.4 glutamate synthase compare
AO353_02710 -2.6 -11.7 (p)ppGpp synthetase compare
AO353_09000 -2.6 -6.8 argininosuccinate lyase compare
AO353_08015 -2.6 -8.0 5,10-methylenetetrahydrofolate reductase compare
AO353_06495 -2.5 -6.5 gamma-glutamyl phosphate reductase compare
AO353_12250 -2.5 -11.9 Urocanate hydratase (EC 4.2.1.49) (from data) conserved
AO353_12270 -2.5 -4.4 histidine ammonia-lyase compare
AO353_07355 -2.5 -6.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_21655 -2.5 -2.5 cobalamin biosynthesis protein CobW compare
AO353_03590 -2.5 -4.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_01375 -2.5 -7.4 phosphate acyltransferase compare
AO353_13610 -2.4 -4.9 precorrin isomerase compare
AO353_10025 -2.4 -13.9 pyruvate carboxylase subunit B compare
AO353_09890 -2.3 -6.0 phosphate ABC transporter ATP-binding protein compare
AO353_14400 -2.3 -4.3 Fis family transcriptional regulator compare
AO353_10030 -2.3 -10.8 pyruvate carboxylase subunit A compare
AO353_10455 -2.2 -2.1 tRNA modification GTPase MnmE compare
AO353_00825 -2.2 -5.1 porin compare
AO353_13605 -2.2 -10.5 oxidoreductase compare
AO353_10705 -2.1 -4.9 tryptophan synthase subunit alpha compare
AO353_07505 -2.1 -8.2 dethiobiotin synthetase compare
AO353_16210 -2.1 -11.1 XRE family transcriptional regulator compare
AO353_08045 -2.0 -13.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_00650 -2.0 -3.6 cytochrome biogenesis protein compare
AO353_07520 -2.0 -11.4 8-amino-7-oxononanoate synthase compare
AO353_00610 -2.0 -2.9 cytochrome C oxidase Cbb3 compare
AO353_16805 -1.9 -6.7 recombinase RecA compare
AO353_07510 -1.9 -9.7 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_08165 -1.9 -3.4 pyrroline-5-carboxylate reductase compare
AO353_02600 -1.8 -2.2 alpha-ribazole phosphatase compare
AO353_14775 -1.8 -6.5 hypothetical protein compare
AO353_12880 -1.8 -2.1 ADP-heptose--LPS heptosyltransferase compare
AO353_06040 -1.8 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_08885 -1.7 -12.1 polyphosphate kinase compare
AO353_12115 -1.7 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_06155 -1.7 -7.7 copper-transporting ATPase compare
AO353_21665 -1.7 -4.7 magnesium chelatase compare
AO353_02610 -1.7 -6.8 adenosylcobinamide kinase compare
AO353_02625 -1.7 -9.8 cobalamin biosynthesis protein CobD compare
AO353_13640 -1.7 -4.6 histidine kinase compare
AO353_13615 -1.7 -11.3 precorrin-2 C20-methyltransferase compare
AO353_12510 -1.7 -9.7 cell division protein compare
AO353_06050 -1.6 -6.6 exodeoxyribonuclease V subunit gamma compare
AO353_09320 -1.6 -8.0 ATP-dependent DNA helicase RecG compare
AO353_20175 -1.6 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_07610 -1.6 -2.0 hypothetical protein compare
AO353_01410 -1.6 -3.5 ribonuclease E compare
AO353_07515 -1.6 -2.1 transporter compare
AO353_23350 -1.6 -2.8 hypothetical protein compare
AO353_06045 -1.5 -6.7 exodeoxyribonuclease V subunit beta compare
AO353_05420 -1.5 -2.0 peptide chain release factor 3 compare
AO353_07075 -1.5 -4.3 elongation factor Tu compare
AO353_02640 -1.5 -1.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_12105 -1.5 -5.8 peptidase S41 compare
AO353_02280 -1.5 -2.3 DNA mismatch repair protein MutS compare
AO353_13620 -1.5 -8.1 precorrin-3B C17-methyltransferase compare
AO353_05075 -1.4 -8.0 adenylylsulfate kinase compare
AO353_05690 -1.4 -3.4 SsrA-binding protein compare
AO353_14420 -1.4 -3.8 molecular chaperone DnaK compare
AO353_08470 -1.4 -4.5 RNA pyrophosphohydrolase compare
AO353_02615 -1.4 -7.0 cobyric acid synthase compare
AO353_10500 -1.4 -3.7 acetylornithine aminotransferase compare
AO353_16940 -1.4 -4.9 deoxycytidine triphosphate deaminase compare
AO353_18540 -1.4 -2.7 pseudouridine synthase compare
AO353_19605 -1.4 -2.3 hypothetical protein compare
AO353_02620 -1.4 -4.9 threonine-phosphate decarboxylase compare
AO353_03585 -1.4 -2.6 ATP-dependent DNA helicase RuvA compare
AO353_21615 -1.4 -8.8 methionine synthase compare
AO353_06100 -1.4 -2.5 thymidylate synthase compare
AO353_12090 -1.4 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_21660 -1.4 -8.0 cobalamin biosynthesis protein CobN compare
AO353_03415 -1.3 -5.4 glucokinase compare
AO353_13590 -1.3 -4.9 cobalt-precorrin-6X reductase compare
AO353_03580 -1.3 -3.2 ATP-dependent DNA helicase RuvB compare
AO353_20170 -1.3 -4.3 trigger factor compare
AO353_00495 -1.3 -2.5 DNA topoisomerase I compare
AO353_08350 -1.3 -6.4 hypothetical protein compare
AO353_27650 -1.3 -3.8 cell division protein FtsK compare
AO353_02635 -1.3 -6.4 cobyrinic acid a,c-diamide synthase compare
AO353_13665 -1.3 -5.0 hypothetical protein compare
AO353_03525 -1.3 -7.3 quinolinate synthase A compare
AO353_15250 -1.3 -2.9 cytochrome B compare
AO353_08880 -1.3 -2.3 exopolyphosphatase compare
AO353_05080 -1.3 -7.8 sulfate adenylyltransferase compare
AO353_14405 -1.3 -7.6 ATPase compare
AO353_03795 -1.2 -3.3 fumarate hydratase compare
AO353_27435 -1.2 -2.5 hypothetical protein compare
AO353_17640 -1.2 -2.4 serine peptidase compare
AO353_00355 -1.2 -2.7 transcriptional regulator compare
AO353_07645 -1.2 -1.4 sarcosine oxidase subunit gamma compare
AO353_15445 -1.2 -2.9 disulfide bond formation protein B compare
AO353_02605 -1.2 -4.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_13140 -1.2 -4.7 tRNA dimethylallyltransferase compare
AO353_00590 -1.2 -3.9 cytochrome C oxidase Cbb3 compare
AO353_28555 -1.2 -2.3 LysR family transcriptional regulator compare
AO353_07555 -1.2 -2.9 glycine cleavage system protein R compare
AO353_12145 -1.2 -3.3 nitrogen regulation protein NR(I) compare
AO353_03020 -1.2 -5.8 arginine N-succinyltransferase compare
AO353_10495 -1.2 -3.3 serine hydroxymethyltransferase compare
AO353_04565 -1.2 -4.0 nucleoid-associated protein compare
AO353_08485 -1.1 -7.8 threonine dehydratase compare
AO353_08640 -1.1 -2.8 hypothetical protein compare
AO353_19770 -1.1 -2.2 peptidase compare
AO353_16845 -1.1 -5.7 LysR family transcriptional regulator compare
AO353_15725 -1.1 -3.4 hypothetical protein compare
AO353_12255 -1.1 -6.4 sulfonate ABC transporter substrate-binding protein conserved
AO353_14990 -1.1 -1.9 hypothetical protein compare
AO353_03670 -1.1 -3.9 ornithine acetyltransferase compare
AO353_20095 -1.1 -3.7 histidine kinase compare
AO353_03420 -1.1 -3.4 phosphogluconate dehydratase compare
AO353_00750 -1.1 -2.8 GntR family transcriptional regulator compare
AO353_07315 -1.1 -2.1 rRNA methyltransferase compare
AO353_14395 -1.1 -3.6 poly(A) polymerase compare
AO353_05520 -1.1 -4.3 nicotinate-nucleotide pyrophosphorylase compare
AO353_13225 -1.1 -2.8 50S ribosomal protein L9 compare
AO353_13200 -1.1 -6.7 exoribonuclease R compare
AO353_21630 -1.0 -1.9 precorrin-4 C11-methyltransferase compare
AO353_12275 -1.0 -7.1 histidine permease (from data) conserved
AO353_08265 -1.0 -3.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_02720 -1.0 -4.1 cysteine synthase compare
AO353_06745 -1.0 -2.3 zinc-binding protein compare
AO353_06160 -1.0 -3.3 transcriptional regulator compare
AO353_02175 -1.0 -1.8 carbon storage regulator compare
AO353_20630 -1.0 -5.0 SAM-dependent methyltransferase compare
AO353_04175 -1.0 -3.3 glycerol uptake facilitator GlpF compare
AO353_08115 -1.0 -4.1 energy transducer TonB compare
AO353_10520 -1.0 -4.0 GntR family transcriptional regulator compare
AO353_03545 -0.9 -4.8 hypothetical protein compare
AO353_02975 -0.9 -2.3 aspartate kinase compare
AO353_15905 -0.9 -4.4 outer membrane protein assembly factor BamB compare
AO353_02940 -0.9 -2.3 DNA-binding protein compare
AO353_03275 -0.9 -2.2 LysR family transcriptional regulator compare
AO353_14370 -0.9 -4.0 glucose-6-phosphate isomerase compare
AO353_00600 -0.9 -4.6 cytochrome C oxidase Cbb3 compare
AO353_08110 -0.9 -3.9 glutathione synthetase compare
AO353_05130 -0.9 -1.4 anti-anti-sigma factor compare
AO353_25315 -0.9 -2.9 malonate decarboxylase subunit epsilon compare
AO353_18890 -0.9 -2.7 cytochrome C compare
AO353_10715 -0.9 -3.7 LysR family transcriptional regulator compare
AO353_20510 -0.9 -1.2 amidase compare
AO353_06725 -0.9 -1.4 hypothetical protein compare
AO353_04240 -0.9 -1.1 chemotaxis protein CheW compare
AO353_16980 -0.9 -2.3 isochorismatase compare
AO353_13155 -0.9 -2.5 hypothetical protein compare
AO353_06320 -0.9 -3.1 AsnC family transcriptional regulator compare
AO353_17175 -0.9 -2.2 beta-ketoadipyl CoA thiolase compare
AO353_09915 -0.9 -4.5 long-chain acyl-CoA thioester hydrolase compare
AO353_28935 -0.9 -1.6 ATPase compare
AO353_28945 -0.9 -1.4 potassium-transporting ATPase subunit B compare
AO353_09050 -0.9 -2.7 recombinase XerC compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Histidine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Histidine across organisms