Experiment set6IT082 for Methanococcus maripaludis S2

Compare to:

formate N-free with 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMP_RS03435 -4.9 -3.1 ketol-acid reductoisomerase compare
MMP_RS05500 -4.8 -10.0 2-isopropylmalate synthase compare
MMP_RS06355 -4.6 -4.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01175 -4.5 -7.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03450 -4.5 -3.6 glycine synthesis protein GlyXS (from data) compare
MMP_RS07345 -4.0 -8.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS06350 -3.9 -11.0 HesA/MoeB/ThiF family protein compare
MMP_RS03015 -3.9 -13.8 GTP 3' 8-cyclase MoaA compare
MMP_RS06680 -3.8 -19.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05515 -3.8 -12.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01020 -3.7 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07845 -3.6 -4.3 LL-diaminopimelate aminotransferase compare
MMP_RS06685 -3.6 -19.7 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01545 -3.5 -1.8 CBS domain-containing protein compare
MMP_RS06345 -3.5 -16.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03315 -3.4 -2.1 ferrous iron transport protein A compare
MMP_RS06720 -3.4 -12.1 response regulator transcription factor compare
MMP_RS06730 -3.4 -2.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS04900 -3.2 -25.8 hypothetical protein compare
MMP_RS07635 -3.2 -12.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06715 -3.2 -20.8 cache domain-containing protein compare
MMP_RS07630 -3.2 -2.9 ATP-binding cassette domain-containing protein compare
MMP_RS08720 -3.1 -3.1 4Fe-4S binding protein compare
MMP_RS06700 -3.1 -15.8 hypothetical protein compare
MMP_RS08165 -3.1 -3.3 phosphoglycerate dehydrogenase compare
MMP_RS04215 -3.1 -10.9 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01455 -3.0 -10.2 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06375 -3.0 -9.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS02010 -2.9 -13.0 PHP domain-containing protein compare
MMP_RS04615 -2.9 -4.9 PDGLE domain-containing protein compare
MMP_RS06270 -2.9 -5.9 TIGR00300 family protein compare
MMP_RS04890 -2.8 -1.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07365 -2.8 -16.0 2-phosphoglycerate kinase compare
MMP_RS03035 -2.8 -6.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07185 -2.7 -17.2 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06705 -2.6 -9.5 formate/nitrite transporter family protein compare
MMP_RS05425 -2.6 -6.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07735 -2.6 -1.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04605 -2.6 -6.0 cobalt ECF transporter T component CbiQ compare
MMP_RS01985 -2.6 -7.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS03640 -2.6 -6.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS00695 -2.6 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06175 -2.5 -9.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS08300 -2.5 -2.1 metal-sulfur cluster assembly factor compare
MMP_RS01005 -2.5 -2.0 riboflavin synthase compare
MMP_RS05555 -2.5 -2.4 DUF4040 domain-containing protein compare
MMP_RS05875 -2.5 -6.4 hydroxyethylthiazole kinase compare
MMP_RS07445 -2.4 -7.6 helix-turn-helix domain-containing protein compare
MMP_RS01500 -2.4 -4.3 CBS domain-containing protein compare
MMP_RS04620 -2.4 -15.8 cobalt transporter CbiM compare
MMP_RS00300 -2.4 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07555 -2.4 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS08820 -2.3 -8.9 hypothetical protein compare
MMP_RS02355 -2.3 -4.8 30S ribosomal protein S27ae compare
MMP_RS03960 -2.3 -1.7 hypothetical protein compare
MMP_RS00295 -2.3 -3.2 gamma carbonic anhydrase family protein compare
MMP_RS08940 -2.2 -2.2 MetS family NSS transporter small subunit compare
MMP_RS08745 -2.2 -9.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06295 -2.2 -9.2 methanogenesis marker 14 protein compare
MMP_RS06105 -2.2 -9.9 hydrogenase maturation peptidase HycI compare
MMP_RS01755 -2.2 -2.2 DUF2097 domain-containing protein compare
MMP_RS00040 -2.2 -5.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01700 -2.2 -1.5 dihydroxy-acid dehydratase compare
MMP_RS07525 -2.1 -10.3 4Fe-4S binding protein compare
MMP_RS05085 -2.1 -11.1 AAA family ATPase compare
MMP_RS08635 -2.1 -3.0 UbiA family prenyltransferase compare
MMP_RS06840 -2.1 -1.4 DNA-directed RNA polymerase subunit N compare
MMP_RS05765 -2.1 -6.4 M42 family metallopeptidase compare
MMP_RS01265 -2.0 -2.5 hypothetical protein compare
MMP_RS06975 -2.0 -3.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08210 -2.0 -3.2 phosphatidylglycerophosphatase A compare
MMP_RS05060 -2.0 -11.1 AAA family ATPase compare
MMP_RS04780 -2.0 -4.0 ribonuclease P compare
MMP_RS05095 -2.0 -6.4 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS00115 -2.0 -13.3 radical SAM protein compare
MMP_RS06925 -2.0 -3.9 ribonuclease VapC4 compare
MMP_RS05080 -2.0 -11.0 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS08460 -1.9 -4.2 proteasome-activating nucleotidase compare
MMP_RS08715 -1.9 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03600 -1.9 -2.2 triose-phosphate isomerase compare
MMP_RS03025 -1.9 -6.1 molybdenum cofactor guanylyltransferase compare
MMP_RS07575 -1.9 -5.2 RNA ligase partner protein compare
MMP_RS07730 -1.9 -2.1 pyruvate synthase subunit beta compare
MMP_RS05075 -1.9 -13.6 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS04585 -1.9 -9.7 AIR synthase related protein compare
MMP_RS05550 -1.8 -1.0 cation:proton antiporter compare
MMP_RS05100 -1.8 -12.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06400 -1.8 -2.4 4Fe-4S binding protein compare
MMP_RS05090 -1.8 -8.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS04870 -1.8 -8.2 TIGR02253 family HAD-type hydrolase compare
MMP_RS08790 -1.8 -2.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS05265 -1.8 -2.6 2-isopropylmalate synthase compare
MMP_RS05930 -1.8 -2.9 3-isopropylmalate dehydratase large subunit compare
MMP_RS02800 -1.7 -4.9 nucleotidyltransferase domain-containing protein compare
MMP_RS09055 -1.7 -1.6 CAP domain-containing protein compare
MMP_RS01220 -1.7 -7.9 hypothetical protein compare
MMP_RS08330 -1.7 -7.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS01610 -1.7 -4.0 hypothetical protein compare
MMP_RS04710 -1.6 -1.9 hypothetical protein compare
MMP_RS08100 -1.6 -5.9 8-amino-7-oxononanoate synthase compare
MMP_RS00685 -1.6 -4.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05055 -1.6 -11.4 DUF166 domain-containing protein compare
MMP_RS08105 -1.6 -7.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS03205 -1.6 -2.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00305 -1.6 -1.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS02235 -1.6 -7.1 CBS domain-containing protein compare
MMP_RS00620 -1.6 -8.0 4Fe-4S binding protein compare
MMP_RS05540 -1.6 -3.3 hypothetical protein compare
MMP_RS04500 -1.6 -10.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS09020 -1.6 -2.1 hypothetical protein compare
MMP_RS02195 -1.5 -3.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01365 -1.5 -2.8 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS05070 -1.5 -6.3 4Fe-4S dicluster domain-containing protein compare
MMP_RS00555 -1.5 -4.4 MFS transporter compare
MMP_RS06370 -1.5 -5.1 biotin synthase BioB compare
MMP_RS04875 -1.5 -3.9 energy-converting hydrogenase B subunit P compare
MMP_RS05245 -1.5 -9.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS06340 -1.5 -8.1 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05845 -1.5 -2.3 tRNA-intron lyase compare
MMP_RS02280 -1.4 -1.2 DUF211 domain-containing protein compare
MMP_RS02340 -1.4 -2.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01380 -1.4 -5.0 PHP domain-containing protein compare
MMP_RS00290 -1.4 -6.2 hypothetical protein compare
MMP_RS06895 -1.4 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS04775 -1.4 -3.7 adenosylhomocysteinase compare
MMP_RS07710 -1.4 -5.3 cell division protein FtsZ compare
MMP_RS01385 -1.4 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01800 -1.4 -4.0 TIGR00303 family protein compare
MMP_RS08095 -1.4 -6.9 dethiobiotin synthase compare
MMP_RS05065 -1.3 -4.4 CooT family nickel-binding protein compare
MMP_RS06625 -1.3 -2.0 DNA primase compare
MMP_RS06200 -1.3 -7.1 M24 family metallopeptidase compare
MMP_RS00455 -1.3 -7.8 orotate phosphoribosyltransferase-like protein compare
MMP_RS06020 -1.3 -4.0 archaeoflavoprotein AfpA compare
MMP_RS06865 -1.2 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS07355 -1.2 -1.2 transcription factor S compare
MMP_RS01085 -1.2 -1.9 hypothetical protein compare
MMP_RS05430 -1.2 -4.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS00895 -1.2 -3.8 hypothetical protein compare
MMP_RS03580 -1.2 -3.9 signal recognition particle-docking protein FtsY compare
MMP_RS01745 -1.2 -3.3 AMP phosphorylase compare
MMP_RS04790 -1.2 -7.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS02240 -1.2 -2.9 methanogenesis marker 7 protein compare
MMP_RS07645 -1.2 -5.9 aldehyde dehydrogenase family protein compare
MMP_RS07580 -1.1 -3.1 DUF356 domain-containing protein compare
MMP_RS03140 -1.1 -6.6 hypothetical protein compare
MMP_RS01830 -1.1 -2.0 tRNA-Val compare
MMP_RS06285 -1.1 -2.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02170 -1.1 -4.9 CBS domain-containing protein compare
MMP_RS01250 -1.1 -2.8 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS03485 -1.1 -3.0 TIGR00267 family protein compare
MMP_RS02930 -1.1 -1.8 class I SAM-dependent methyltransferase compare
MMP_RS08320 -1.1 -4.3 molybdopterin molybdotransferase MoeA compare
MMP_RS01795 -1.1 -1.8 methanogenesis marker 6 protein compare
MMP_RS03305 -1.0 -4.2 winged helix-turn-helix domain-containing protein compare
MMP_RS07720 -1.0 -5.9 4Fe-4S binding protein compare
MMP_RS02135 -1.0 -2.5 DUF5612 domain-containing protein compare
MMP_RS00965 -1.0 -1.6 hypothetical protein compare
MMP_RS04125 -1.0 -2.8 TetR/AcrR family transcriptional regulator compare
MMP_RS05920 -1.0 -0.6 50S ribosomal protein L37e compare
MMP_RS02165 -1.0 -3.6 tRNA-dihydrouridine synthase compare
MMP_RS01720 -1.0 -1.3 replication factor C large subunit compare
MMP_RS00750 -1.0 -1.9 fumarate hydratase compare
MMP_RS02345 -1.0 -2.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06475 -1.0 -4.1 FAD-dependent oxidoreductase compare
MMP_RS01225 -1.0 -3.9 DUF5379 domain-containing protein compare
MMP_RS08240 -1.0 -5.6 methanogenesis marker 16 metalloprotein compare
MMP_RS08645 -1.0 -4.1 UPF0179 family protein compare
MMP_RS02145 -0.9 -5.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS01195 -0.9 -1.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03440 -0.9 -1.1 MoaD/ThiS family protein compare
MMP_RS01075 -0.9 -1.5 hypothetical protein compare
MMP_RS07535 -0.9 -5.9 4Fe-4S binding protein compare
MMP_RS06215 -0.9 -2.2 30S ribosomal protein S6e compare
MMP_RS02190 -0.9 -2.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS05850 -0.9 -2.1 Ldh family oxidoreductase compare
MMP_RS07600 -0.9 -2.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03095 -0.9 -4.7 diphthine synthase compare
MMP_RS01570 -0.9 -1.6 hypothetical protein compare
MMP_RS05925 -0.9 -2.7 small nuclear ribonucleoprotein compare
MMP_RS03700 -0.9 -5.0 sodium:proton antiporter compare
MMP_RS08615 -0.9 -1.9 flagellar protein G compare
MMP_RS05505 -0.9 -5.1 class IV adenylate cyclase compare
MMP_RS02900 -0.9 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02885 -0.9 -6.8 molybdopterin biosynthesis protein compare
MMP_RS07380 -0.9 -1.5 transcription elongation factor Spt5 compare
MMP_RS06885 -0.9 -1.8 50S ribosome-binding GTPase compare
MMP_RS00535 -0.8 -1.3 TIGR00375 family protein compare
MMP_RS07605 -0.8 -3.2 diadenylate cyclase compare
MMP_RS08445 -0.8 -2.8 DUF2099 family protein compare
MMP_RS08435 -0.8 -1.5 Era-like GTP-binding protein compare
MMP_RS03145 -0.8 -4.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06855 -0.8 -5.3 hypothetical protein compare
MMP_RS03555 -0.8 -4.1 transcriptional regulator compare
MMP_RS08200 -0.8 -5.6 archaeosine synthase subunit alpha compare
MMP_RS06915 -0.8 -2.8 metallophosphoesterase compare
MMP_RS03475 -0.8 -0.5 hypothetical protein compare
MMP_RS00050 -0.8 -4.0 AarF/UbiB family protein compare
MMP_RS04410 -0.8 -2.4 hypothetical protein compare
MMP_RS07705 -0.8 -4.2 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms