Experiment set6IT082 for Herbaspirillum seropedicae SmR1

Compare to:

Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS13890 +1.8 11.6 LuxR family transcriptional regulator compare
HSERO_RS13885 +1.8 10.8 histidine kinase compare
HSERO_RS22450 +1.8 7.7 aldose 1-epimerase compare
HSERO_RS14985 +1.6 8.3 transcriptional regulator compare
HSERO_RS10805 +1.5 2.2 succinyldiaminopimelate aminotransferase compare
HSERO_RS15665 +1.4 1.4 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS05165 +1.4 8.5 galactose-1-epimerase compare
HSERO_RS10145 +1.2 10.5 flagellar biosynthesis protein FlhA compare
HSERO_RS16640 +1.2 3.8 ABC transporter substrate-binding protein compare
HSERO_RS10285 +1.2 3.8 flagellar hook-length control protein compare
HSERO_RS10305 +1.2 8.2 flagellar motor switch protein FliG compare
HSERO_RS10310 +1.1 8.5 flagellar M-ring protein FliF compare
HSERO_RS18010 +1.1 1.3 pseudouridine synthase compare
HSERO_RS10255 +1.1 5.1 flagellar biosynthesis protein FliQ compare
HSERO_RS10215 +1.1 7.2 flagellar P-ring protein FlgI compare
HSERO_RS10315 +1.1 6.8 flagellar hook-basal body protein FliE compare
HSERO_RS10140 +1.1 7.1 flagellar biosynthesis protein FlhB compare
HSERO_RS10265 +1.1 7.2 flagellar biosynthesis protein FliO compare
HSERO_RS10150 +1.0 7.1 flagellar biosynthesis regulator FlhF compare
HSERO_RS09205 +1.0 2.8 glutathione ABC transporter permease compare
HSERO_RS10225 +1.0 5.8 flagellar hook protein FlgK compare
HSERO_RS03925 +1.0 2.0 hypothetical protein compare
HSERO_RS10175 +0.9 5.0 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10190 +0.9 2.8 flagellar basal body rod modification protein FlgD compare
HSERO_RS10200 +0.9 5.3 flagellar basal body rod protein FlgF compare
HSERO_RS07240 +0.9 4.1 membrane protein compare
HSERO_RS10290 +0.9 5.4 flagellar biosynthesis protein FliJ compare
HSERO_RS10295 +0.9 7.2 ATP synthase compare
HSERO_RS10280 +0.9 2.2 flagellar basal body protein FliL compare
HSERO_RS19785 +0.9 3.5 sensor histidine kinase compare
HSERO_RS06335 +0.9 1.3 chemotaxis protein CheY compare
HSERO_RS05855 +0.9 5.5 flagellar motor protein MotA compare
HSERO_RS14970 +0.9 3.6 flagellar motor protein MotB compare
HSERO_RS10185 +0.8 6.2 flagellar basal body rod protein FlgC compare
HSERO_RS16490 +0.8 6.7 FimV compare
HSERO_RS02005 +0.8 2.7 membrane protein compare
HSERO_RS10230 +0.8 4.3 flagellar hook-filament junction protein compare
HSERO_RS12960 +0.8 1.6 hypothetical protein compare
HSERO_RS10250 +0.8 3.8 flagellar biosynthesis protein FliR compare
HSERO_RS10260 +0.8 6.2 flagellar biosynthesis protein FliP compare
HSERO_RS12975 +0.8 1.5 phytoene synthase compare
HSERO_RS14185 +0.8 1.5 FeS cluster assembly scaffold IscU compare
HSERO_RS09910 +0.8 1.5 integration host factor subunit alpha compare
HSERO_RS03700 +0.8 1.9 type VI secretion protein compare
HSERO_RS04135 +0.8 1.8 amidohydrolase compare
HSERO_RS12140 +0.8 2.5 5-deoxyglucuronate isomerase compare
HSERO_RS14975 +0.8 3.3 flagellar motor protein MotA compare
HSERO_RS13715 +0.8 2.2 hypothetical protein compare
HSERO_RS02800 +0.8 1.0 hypothetical protein compare
HSERO_RS20265 +0.8 0.9 hypothetical protein compare
HSERO_RS18550 +0.7 1.3 excinuclease ATPase subunit compare
HSERO_RS08960 +0.7 1.9 2-hydroxyacid dehydrogenase compare
HSERO_RS10205 +0.7 6.4 flagellar basal body rod protein FlgG compare
HSERO_RS21265 +0.7 2.8 transcriptional regulator compare
HSERO_RS18740 +0.7 1.3 hypothetical protein compare
HSERO_RS22015 +0.7 1.7 DNA-binding protein compare
HSERO_RS05245 +0.7 1.4 hypothetical protein compare
HSERO_RS13750 +0.7 2.8 chromosome partitioning ATPase compare
HSERO_RS19630 +0.7 0.6 AMP nucleosidase compare
HSERO_RS10195 +0.7 3.9 flagellar hook protein FlgE compare
HSERO_RS07255 +0.7 1.5 glutaminase compare
HSERO_RS10355 +0.7 3.6 flagellin compare
HSERO_RS10275 +0.7 2.2 flagellar motor switch protein FliM compare
HSERO_RS18685 +0.7 1.1 hypothetical protein compare
HSERO_RS03995 +0.7 1.6 hypothetical protein compare
HSERO_RS23435 +0.7 1.3 MerR family transcriptional regulator compare
HSERO_RS10160 +0.7 4.3 flagellar biosynthesis sigma factor compare
HSERO_RS02815 +0.7 2.1 HxlR family transcriptional regulator compare
HSERO_RS04025 +0.7 2.6 hypothetical protein compare
HSERO_RS12990 +0.7 2.4 aankyrin compare
HSERO_RS11590 +0.7 2.1 hypothetical protein compare
HSERO_RS17940 +0.7 2.2 hypothetical protein compare
HSERO_RS22325 +0.7 1.8 hypothetical protein compare
HSERO_RS03980 +0.7 1.9 type III secretion HrcS protein compare
HSERO_RS21735 +0.7 1.3 hypothetical protein compare
HSERO_RS12215 +0.6 1.8 alpha/beta hydrolase superfamily protein compare
HSERO_RS06420 +0.6 1.2 hypothetical protein compare
HSERO_RS11345 +0.6 1.3 hypothetical protein compare
HSERO_RS08465 +0.6 1.9 hypothetical protein compare
HSERO_RS00805 +0.6 1.4 preprotein translocase subunit SecB compare
HSERO_RS01920 +0.6 4.1 50S ribosomal protein L11 methyltransferase compare
HSERO_RS15580 +0.6 2.5 tRNA-binding protein compare
HSERO_RS03190 +0.6 1.8 glutathione S-transferase compare
HSERO_RS08530 +0.6 2.8 glycine/betaine ABC transporter permease compare
HSERO_RS15480 +0.6 3.9 transcriptional regulator compare
HSERO_RS04450 +0.6 2.1 hypothetical protein compare
HSERO_RS19005 +0.6 2.9 glutathione peroxidase compare
HSERO_RS15900 +0.6 2.5 hypothetical protein compare
HSERO_RS19800 +0.6 2.8 membrane protein compare
HSERO_RS02665 +0.6 2.5 hypothetical protein compare
HSERO_RS04970 +0.6 2.3 dioxygenase compare
HSERO_RS06805 +0.6 1.6 transcriptional regulator compare
HSERO_RS15895 +0.6 3.1 peptide ABC transporter permease compare
HSERO_RS20855 +0.6 1.8 ferritin compare
HSERO_RS21590 +0.6 4.3 ATP-dependent DNA helicase Rep compare
HSERO_RS07840 +0.6 2.6 methionine ABC transporter substrate-binding protein compare
HSERO_RS16305 +0.6 1.9 hypothetical protein compare
HSERO_RS15315 +0.6 1.9 transcriptional regulator compare
HSERO_RS04100 +0.6 1.8 phosphoribosyltransferase compare
HSERO_RS05325 +0.6 1.1 ribose ABC transporter permease compare
HSERO_RS12950 +0.6 2.9 calcium-binding protein compare
HSERO_RS09230 +0.6 3.3 2-dehydropantoate 2-reductase compare
HSERO_RS11880 +0.6 1.8 hypothetical protein compare
HSERO_RS23830 +0.6 2.5 transcriptional regulator compare
HSERO_RS05860 +0.6 2.4 biopolymer transporter ExbD compare
HSERO_RS02795 +0.6 1.0 alcohol dehydrogenase compare
HSERO_RS02700 +0.6 1.0 hypothetical protein compare
HSERO_RS10180 +0.6 1.3 flagellar biosynthesis protein FlgB compare
HSERO_RS09820 +0.6 1.5 riboflavin synthase subunit beta compare
HSERO_RS19780 +0.6 3.3 chemotaxis protein CheY compare
HSERO_RS09990 +0.6 0.9 glycosyl transferase compare
HSERO_RS09335 +0.5 1.3 DNA-3-methyladenine glycosylase compare
HSERO_RS05690 +0.5 1.6 hypothetical protein compare
HSERO_RS02770 +0.5 1.2 hypothetical protein compare
HSERO_RS03875 +0.5 0.8 hypothetical protein compare
HSERO_RS18900 +0.5 2.8 2-alkenal reductase compare
HSERO_RS21725 +0.5 2.1 polyketide cyclase compare
HSERO_RS17010 +0.5 2.2 ABC transporter for D-sorbitol/xylitol, permease component 2 (from data) compare
HSERO_RS08470 +0.5 2.0 chemotaxis protein compare
HSERO_RS13300 +0.5 1.9 cobalt-precorrin-6Y C(5)-methyltransferase compare
HSERO_RS01290 +0.5 2.8 hypothetical protein compare
HSERO_RS04705 +0.5 2.1 AraC family transcriptional regulator compare
HSERO_RS09855 +0.5 1.3 GTP pyrophosphokinase compare
HSERO_RS18930 +0.5 2.0 polyphosphate kinase compare
HSERO_RS13250 +0.5 2.5 oxygen-insensitive nitroreductase compare
HSERO_RS09740 +0.5 2.8 histidine kinase compare
HSERO_RS11010 +0.5 1.5 RnfH compare
HSERO_RS16200 +0.5 1.4 hypothetical protein compare
HSERO_RS08790 +0.5 0.5 hypothetical protein compare
HSERO_RS03415 +0.5 0.9 polyisoprenoid-binding protein compare
HSERO_RS08935 +0.5 1.3 transcriptional regulator compare
HSERO_RS14170 +0.5 2.1 thioredoxin compare
HSERO_RS07625 +0.5 0.8 tryptophanyl-tRNA synthetase compare
HSERO_RS11665 +0.5 1.3 nitrate ABC transporter ATP-binding protein compare
HSERO_RS10095 +0.5 0.9 hypothetical protein compare
HSERO_RS08760 +0.5 1.7 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
HSERO_RS13040 +0.5 1.1 hypothetical protein compare
HSERO_RS12185 +0.5 2.1 methyl-accepting chemotaxis transducer transmembrane protein compare
HSERO_RS10770 +0.5 1.8 amino acid ABC transporter permease compare
HSERO_RS15925 +0.5 2.8 amidohydrolase compare
HSERO_RS01325 +0.5 1.3 cation/multidrug efflux protein compare
HSERO_RS07380 +0.5 1.0 hypothetical protein compare
HSERO_RS01915 +0.5 3.7 membrane protein compare
HSERO_RS04665 +0.5 1.7 nitrile hydratase compare
HSERO_RS15885 +0.5 3.0 hypothetical protein compare
HSERO_RS03865 +0.5 1.8 hypothetical protein compare
HSERO_RS03840 +0.5 1.1 hypothetical protein compare
HSERO_RS09735 +0.5 2.0 hypothetical protein compare
HSERO_RS21965 +0.5 2.4 NAD(P)H dehydrogenase compare
HSERO_RS21875 +0.5 1.9 endoribonuclease L-PSP compare
HSERO_RS01985 +0.5 1.8 energy transducer TonB compare
HSERO_RS23270 +0.5 1.7 ABC transporter compare
HSERO_RS18150 +0.5 1.5 hypothetical protein compare
HSERO_RS20865 +0.5 2.0 ABC transporter permease compare
HSERO_RS13580 +0.5 2.2 LysR family transcriptional regulator compare
HSERO_RS11835 +0.5 1.6 hypothetical protein compare
HSERO_RS21135 +0.5 1.5 transcriptional regulator compare
HSERO_RS21795 +0.5 1.3 CoA-binding protein compare
HSERO_RS03575 +0.5 0.9 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS07280 +0.5 2.4 hypothetical protein compare
HSERO_RS11320 +0.5 2.2 hypothetical protein compare
HSERO_RS08225 +0.5 2.4 alpha/beta hydrolase compare
HSERO_RS12350 +0.5 1.7 histidine kinase compare
HSERO_RS03540 +0.5 0.5 dimethyladenosine transferase compare
HSERO_RS10970 +0.5 1.2 NfeD family protein compare
HSERO_RS19000 +0.5 2.8 twitching motility protein PilT compare
HSERO_RS21200 +0.5 3.0 glycosyl transferase family 1 compare
HSERO_RS00375 +0.5 1.7 phosphatidate cytidylyltransferase compare
HSERO_RS22610 +0.5 1.6 AraC family transcriptional regulator compare
HSERO_RS11565 +0.4 2.0 cytochrome C oxidase subunit III compare
HSERO_RS15140 +0.4 2.6 chemotaxis protein CheY compare
HSERO_RS22360 +0.4 1.3 lauroyl acyltransferase compare
HSERO_RS11165 +0.4 1.4 arylesterase compare
HSERO_RS02350 +0.4 2.2 diadenosine tetraphosphatase compare
HSERO_RS22645 +0.4 1.6 lipase compare
HSERO_RS04525 +0.4 1.0 lysozyme compare
HSERO_RS18945 +0.4 2.3 glycerol-3-phosphate transporter membrane protein compare
HSERO_RS09755 +0.4 2.1 hypothetical protein compare
HSERO_RS14575 +0.4 1.8 hypothetical protein compare
HSERO_RS11855 +0.4 0.8 hypothetical protein compare
HSERO_RS03475 +0.4 1.1 NUDIX hydrolase compare
HSERO_RS08535 +0.4 1.9 glycine/betaine ABC transporter substrate-binding protein compare
HSERO_RS20810 +0.4 2.0 amidophosphoribosyltransferase compare
HSERO_RS12420 +0.4 1.0 transcriptional regulator compare
HSERO_RS17290 +0.4 2.0 chromate transporter compare
HSERO_RS01530 +0.4 1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
HSERO_RS20860 +0.4 1.9 hypothetical protein compare
HSERO_RS19750 +0.4 0.9 hypothetical protein compare
HSERO_RS09005 +0.4 2.5 type I secretion protein HlyD compare
HSERO_RS06380 +0.4 2.3 excisionase compare
HSERO_RS14620 +0.4 1.8 chemotaxis protein compare
HSERO_RS06330 +0.4 1.4 transcriptional regulator compare
HSERO_RS18095 +0.4 1.2 antibiotic biosynthesis monooxygenase compare
HSERO_RS11100 +0.4 1.6 plasmid stabilization protein compare
HSERO_RS09750 +0.4 2.0 8-amino-7-oxononanoate synthase compare
HSERO_RS12475 +0.4 1.0 histidine kinase compare
HSERO_RS04355 +0.4 1.1 aspartyl-tRNA amidotransferase subunit B compare
HSERO_RS01055 +0.4 2.2 bacteriophage regulatory protein compare
HSERO_RS03550 +0.4 1.3 glyoxalase I compare
HSERO_RS08565 +0.4 2.7 RNA helicase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 2-Deoxyadenosine 5-monophosphate in Herbaspirillum seropedicae SmR1

For carbon source 2-Deoxyadenosine 5-monophosphate across organisms