Experiment set6IT082 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -8.8 -5.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -6.9 -4.8 NUDIX domain-containing protein compare
ABZR87_RS08695 -5.7 -14.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS07355 -5.2 -8.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS00970 -5.2 -2.8 molecular chaperone DnaJ compare
ABZR87_RS08630 -4.9 -10.3 dihydroorotase compare
ABZR87_RS07735 -4.8 -6.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS02550 -4.7 -5.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS03420 -4.7 -1.2 type II secretion system minor pseudopilin GspI compare
ABZR87_RS01855 -4.3 -12.8 A24 family peptidase compare
ABZR87_RS04865 -4.3 -5.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS12345 -4.1 -1.0 dethiobiotin synthase compare
ABZR87_RS09895 -4.1 -1.7 DUF1841 family protein compare
ABZR87_RS02555 -4.1 -7.3 ABC transporter ATP-binding protein compare
ABZR87_RS05100 -4.0 -7.3 RNA polymerase-binding protein DksA compare
ABZR87_RS02590 -3.9 -10.4 3-dehydroquinate synthase compare
ABZR87_RS20440 -3.8 -0.9 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS02640 -3.6 -14.8 diaminopimelate decarboxylase compare
ABZR87_RS08645 -3.6 -0.9 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS02385 -3.5 -5.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02160 -3.5 -5.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS01675 -3.5 -3.3 carbohydrate kinase family protein compare
ABZR87_RS01225 -3.4 -3.3 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS13790 -3.4 -11.1 chorismate synthase compare
ABZR87_RS02565 -3.4 -5.8 glutamate synthase subunit beta compare
ABZR87_RS02440 -3.4 -11.4 twin-arginine translocase subunit TatC compare
ABZR87_RS09500 -3.3 -4.2 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS08625 -3.3 -3.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS04995 -3.3 -2.3 DNA topoisomerase III compare
ABZR87_RS02540 -3.3 -7.7 VacJ family lipoprotein compare
ABZR87_RS02445 -3.3 -5.0 Sec-independent protein translocase protein TatB compare
ABZR87_RS03075 -3.3 -9.4 AGE family epimerase/isomerase compare
ABZR87_RS02545 -3.3 -8.9 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS03455 -3.2 -12.9 type II secretion system ATPase GspE compare
ABZR87_RS04945 -3.2 -2.7 DUF4390 domain-containing protein compare
ABZR87_RS03440 -3.2 -7.8 type II secretion system protein GspM compare
ABZR87_RS03425 -3.2 -8.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS12785 -3.1 -4.8 endopeptidase La compare
ABZR87_RS09465 -3.0 -7.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS10980 -3.0 -1.0 tRNA-Leu compare
ABZR87_RS02535 -3.0 -8.0 phospholipid-binding protein MlaC compare
ABZR87_RS06845 -3.0 -10.4 heme o synthase compare
ABZR87_RS14505 -3.0 -4.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS11940 -3.0 -3.4 SsrA-binding protein SmpB compare
ABZR87_RS03410 -2.9 -9.0 type II secretion system major pseudopilin GspG compare
ABZR87_RS07380 -2.9 -15.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14605 -2.9 -10.2 aconitate hydratase AcnA compare
ABZR87_RS09505 -2.8 -6.3 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS16735 -2.8 -14.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS05590 -2.8 -2.7 orotate phosphoribosyltransferase compare
ABZR87_RS04940 -2.8 -6.0 PAS domain-containing sensor histidine kinase compare
ABZR87_RS14530 -2.8 -10.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS01685 -2.8 -5.9 histone H1-like DNA-binding protein compare
ABZR87_RS02380 -2.7 -11.0 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS10195 -2.7 -3.9 signal peptidase I compare
ABZR87_RS13705 -2.7 -1.1 integration host factor subunit alpha compare
ABZR87_RS01615 -2.7 -1.6 RNB domain-containing ribonuclease compare
ABZR87_RS14490 -2.6 -10.2 tryptophan synthase subunit alpha compare
ABZR87_RS03450 -2.6 -15.0 type II secretion system secretin GspD compare
ABZR87_RS14535 -2.6 -6.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02850 -2.6 -2.9 elongation factor Tu compare
ABZR87_RS13250 -2.6 -2.7 phosphoserine phosphatase SerB compare
ABZR87_RS02595 -2.6 -9.5 shikimate kinase compare
ABZR87_RS06350 -2.6 -9.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS05065 -2.5 -3.4 tyrosine recombinase XerC compare
ABZR87_RS00325 -2.5 -1.6 peptidylprolyl isomerase compare
ABZR87_RS16960 -2.5 -3.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS03460 -2.5 -12.5 type II secretion system inner membrane protein GspF compare
ABZR87_RS22920 -2.5 -3.4 phosphogluconate dehydratase compare
ABZR87_RS09615 -2.5 -1.5 50S ribosomal protein L19 compare
ABZR87_RS08795 -2.5 -3.3 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS14680 -2.5 -1.1 SDR family oxidoreductase compare
ABZR87_RS10870 -2.4 -6.6 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS02155 -2.4 -7.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS01035 -2.4 -6.6 histidine utilization repressor compare
ABZR87_RS11245 -2.4 -4.7 translational GTPase TypA compare
ABZR87_RS14540 -2.4 -6.3 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS20880 -2.4 -10.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS01640 -2.4 -2.6 TlpA disulfide reductase family protein compare
ABZR87_RS02570 -2.3 -17.1 glutamate synthase-related protein compare
ABZR87_RS03430 -2.3 -7.8 type II secretion system minor pseudopilin GspK compare
ABZR87_RS15715 -2.3 -7.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS00875 -2.3 -5.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS00435 -2.3 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS11460 -2.3 -3.2 gephyrin-like molybdotransferase Glp compare
ABZR87_RS22970 -2.2 -10.9 cystathionine gamma-synthase family protein compare
ABZR87_RS02375 -2.2 -9.9 cytochrome c1 compare
ABZR87_RS05200 -2.2 -12.2 homoserine O-acetyltransferase compare
ABZR87_RS08990 -2.2 -4.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS08235 -2.2 -1.1 hypothetical protein compare
ABZR87_RS09445 -2.2 -10.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS07710 -2.1 -6.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS08700 -2.1 -7.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS14500 -2.1 -9.2 tryptophan synthase subunit beta compare
ABZR87_RS13285 -2.1 -10.0 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02630 -2.1 -4.7 iron donor protein CyaY compare
ABZR87_RS03445 -2.1 -7.1 type II secretion system protein N compare
ABZR87_RS08750 -2.1 -3.8 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS10610 -2.1 -1.0 inositol monophosphatase family protein compare
ABZR87_RS08970 -2.1 -4.9 protein TolQ compare
ABZR87_RS03435 -2.1 -5.9 type II secretion system protein GspL compare
ABZR87_RS13475 -2.0 -4.5 PAS domain S-box protein compare
ABZR87_RS02145 -2.0 -1.7 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS07035 -1.9 -8.3 RNase adapter RapZ compare
ABZR87_RS16730 -1.9 -4.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS01645 -1.9 -5.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS11980 -1.9 -1.1 cold-shock protein compare
ABZR87_RS07510 -1.9 -3.7 LysR family transcriptional regulator compare
ABZR87_RS07625 -1.9 -1.7 Holliday junction branch migration protein RuvA compare
ABZR87_RS06840 -1.9 -5.0 COX15/CtaA family protein compare
ABZR87_RS07665 -1.9 -7.7 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00795 -1.9 -2.2 site-specific tyrosine recombinase XerD compare
ABZR87_RS08040 -1.9 -7.4 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS01085 -1.9 -1.8 rhombosortase compare
ABZR87_RS16885 -1.9 -1.3 hypothetical protein compare
ABZR87_RS17650 -1.8 -5.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03565 -1.8 -5.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS20875 -1.8 -5.9 LysR family transcriptional regulator compare
ABZR87_RS09450 -1.8 -5.2 prephenate dehydratase compare
ABZR87_RS10565 -1.8 -2.2 cupin domain-containing protein compare
ABZR87_RS12790 -1.8 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS08985 -1.8 -8.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS02655 -1.8 -7.5 anti-sigma factor compare
ABZR87_RS02140 -1.8 -8.6 anthranilate synthase component I compare
ABZR87_RS01425 -1.8 -2.7 ferric iron uptake transcriptional regulator compare
ABZR87_RS02680 -1.7 -6.8 c-type cytochrome compare
ABZR87_RS21950 -1.7 -4.5 hypothetical protein compare
ABZR87_RS16540 -1.7 -1.8 MarR family transcriptional regulator compare
ABZR87_RS03415 -1.7 -8.3 GspH/FimT family pseudopilin compare
ABZR87_RS10395 -1.7 -5.0 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS07360 -1.7 -8.4 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14080 -1.7 -4.3 phosphate signaling complex protein PhoU compare
ABZR87_RS15405 -1.7 -2.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS07700 -1.7 -1.1 peptidylprolyl isomerase compare
ABZR87_RS11015 -1.7 -4.5 amino-acid N-acetyltransferase compare
ABZR87_RS15490 -1.7 -8.9 glycosyltransferase family 2 protein compare
ABZR87_RS04975 -1.7 -1.6 peptide deformylase compare
ABZR87_RS17340 -1.6 -1.9 MarR family transcriptional regulator compare
ABZR87_RS01420 -1.6 -2.0 outer membrane protein assembly factor BamE compare
ABZR87_RS01760 -1.6 -0.7 PP0621 family protein compare
ABZR87_RS15665 -1.6 -4.3 ZIP family metal transporter compare
ABZR87_RS12800 -1.6 -3.9 trigger factor compare
ABZR87_RS16125 -1.6 -5.8 heme biosynthesis protein HemY compare
ABZR87_RS06645 -1.6 -1.3 TlpA disulfide reductase family protein compare
ABZR87_RS04880 -1.6 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS17440 -1.6 -1.0 (2Fe-2S)-binding protein compare
ABZR87_RS01270 -1.5 -6.9 ATP-dependent DNA helicase RecG compare
ABZR87_RS01745 -1.5 -4.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS07760 -1.5 -1.5 HlyC/CorC family transporter compare
ABZR87_RS04785 -1.5 -6.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS16170 -1.5 -1.0 argininosuccinate lyase compare
ABZR87_RS18415 -1.5 -1.5 hypothetical protein compare
ABZR87_RS23390 -1.5 -7.2 anti-sigma factor compare
ABZR87_RS16820 -1.5 -4.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02575 -1.5 -8.3 transposase compare
ABZR87_RS06400 -1.5 -6.8 response regulator transcription factor compare
ABZR87_RS05580 -1.5 -2.1 diaminopimelate epimerase compare
ABZR87_RS02305 -1.4 -1.3 CDGSH iron-sulfur domain-containing protein compare
ABZR87_RS09710 -1.4 -2.0 tRNA-Arg compare
ABZR87_RS07730 -1.4 -2.3 lysophospholipid acyltransferase family protein compare
ABZR87_RS01110 -1.4 -6.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS23035 -1.4 -1.3 PIG-L family deacetylase compare
ABZR87_RS11815 -1.4 -6.1 [protein-PII] uridylyltransferase compare
ABZR87_RS14125 -1.4 -4.2 YhbY family RNA-binding protein compare
ABZR87_RS06725 -1.4 -10.0 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS09635 -1.4 -1.2 ribosome small subunit-dependent GTPase A compare
ABZR87_RS01980 -1.4 -2.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS12955 -1.4 -4.7 terminase endonuclease subunit compare
ABZR87_RS13645 -1.4 -0.6 hypothetical protein compare
ABZR87_RS14950 -1.4 -0.8 acetolactate synthase small subunit compare
ABZR87_RS07620 -1.4 -2.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS22960 -1.4 -3.2 heme-copper oxidase subunit III family protein compare
ABZR87_RS10190 -1.4 -5.9 translation elongation factor 4 compare
ABZR87_RS23265 -1.4 -1.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS00340 -1.4 -1.7 50S ribosomal protein L33 compare
ABZR87_RS19010 -1.4 -1.2 acyloxyacyl hydrolase compare
ABZR87_RS10700 -1.4 -4.8 C40 family peptidase compare
ABZR87_RS04615 -1.4 -3.0 Rrf2 family transcriptional regulator compare
ABZR87_RS23180 -1.3 -1.2 ABC transporter ATP-binding protein compare
ABZR87_RS05570 -1.3 -7.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS04125 -1.3 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS11125 -1.3 -3.9 cell division protein ZapE compare
ABZR87_RS11435 -1.3 -2.5 Mth938-like domain-containing protein compare
ABZR87_RS06495 -1.3 -1.2 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS08980 -1.3 -1.9 cell envelope integrity protein TolA compare
ABZR87_RS15680 -1.3 -5.9 DNA polymerase I compare
ABZR87_RS07290 -1.3 -1.3 DUF6691 family protein compare
ABZR87_RS11790 -1.3 -1.3 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS02220 -1.3 -5.5 redox-regulated ATPase YchF compare
ABZR87_RS14415 -1.3 -1.0 hemin uptake protein HemP compare
ABZR87_RS11440 -1.3 -5.6 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS16080 -1.3 -1.8 P-II family nitrogen regulator compare
ABZR87_RS15500 -1.3 -4.4 glycosyltransferase compare
ABZR87_RS14575 -1.3 -3.4 GntR family transcriptional regulator compare
ABZR87_RS07060 -1.3 -8.3 RNA polymerase factor sigma-54 compare
ABZR87_RS17235 -1.3 -3.7 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS16060 -1.3 -5.4 DNA translocase FtsK compare
ABZR87_RS05645 -1.3 -1.9 SDR family oxidoreductase compare
ABZR87_RS08400 -1.2 -1.2 glycine zipper 2TM domain-containing protein compare
ABZR87_RS01810 -1.2 -2.0 glutamate 5-kinase compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB in Ralstonia sp. UNC404CL21Col

For in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms