Experiment set6IT081 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Minimal media pH7

200 most important genes:

  gene name fitness t score description  
AO356_09815 -5.9 -5.8 imidazoleglycerol-phosphate dehydratase compare
AO356_09525 -5.9 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_14435 -5.6 -7.7 anthranilate phosphoribosyltransferase compare
AO356_09810 -5.5 -3.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_08635 -5.4 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
AO356_21440 -5.4 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_21465 -5.3 -5.2 amidophosphoribosyltransferase compare
AO356_13085 -5.3 -11.2 N-acetylglutamate synthase compare
AO356_12525 -5.2 -11.1 acetylglutamate kinase compare
AO356_13250 -5.1 -10.3 dihydroxy-acid dehydratase compare
AO356_00555 -5.0 -12.5 sulfite reductase compare
AO356_12520 -5.0 -3.4 orotate phosphoribosyltransferase compare
AO356_13405 -5.0 -11.6 methionine biosynthesis protein MetW compare
AO356_18325 -5.0 -14.6 argininosuccinate synthase compare
AO356_16175 -4.9 -8.2 acetolactate synthase 3 regulatory subunit compare
AO356_16870 -4.9 -14.4 benzoate transporter compare
AO356_12020 -4.9 -14.7 pyruvate carboxylase subunit A compare
AO356_09520 -4.8 -5.8 phosphoribosyl-AMP cyclohydrolase compare
AO356_16075 -4.8 -3.3 Fis family transcriptional regulator compare
AO356_10340 -4.8 -15.1 phosphoserine phosphatase compare
AO356_19090 -4.7 -3.3 phosphoribosylaminoimidazole synthetase compare
AO356_10915 -4.7 -10.5 tryptophan synthase subunit beta compare
AO356_06965 -4.7 -9.0 histidinol dehydrogenase compare
AO356_08735 -4.7 -14.7 phosphoserine phosphatase compare
AO356_06970 -4.6 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_09370 -4.5 -12.6 glutamate synthase compare
AO356_16170 -4.5 -12.6 acetolactate synthase 3 catalytic subunit compare
AO356_13605 -4.5 -9.6 5,10-methylenetetrahydrofolate reductase compare
AO356_21405 -4.5 -5.8 3-isopropylmalate dehydratase compare
AO356_10910 -4.4 -10.3 tryptophan synthase subunit alpha compare
AO356_09375 -4.4 -21.6 glutamate synthase compare
AO356_21415 -4.4 -11.2 3-isopropylmalate dehydrogenase compare
AO356_16180 -4.4 -16.2 ketol-acid reductoisomerase compare
AO356_21400 -4.4 -6.7 isopropylmalate isomerase compare
AO356_13410 -4.4 -13.8 homoserine O-acetyltransferase compare
AO356_18275 -4.3 -14.6 ornithine carbamoyltransferase compare
AO356_14420 -4.3 -16.4 anthranilate synthase compare
AO356_14295 -4.3 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_09800 -4.3 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_12025 -4.3 -14.4 pyruvate carboxylase subunit B compare
AO356_14440 -4.2 -5.5 indole-3-glycerol-phosphate synthase compare
AO356_22795 -4.2 -4.1 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_08905 -4.2 -4.1 glycosyl transferase compare
AO356_22200 -4.2 -9.7 sirohydrochlorin ferrochelatase compare
AO356_14430 -4.2 -7.4 anthranilate synthase compare
AO356_02175 -4.1 -8.9 transaldolase compare
AO356_15815 -4.1 -2.8 gamma-glutamyl kinase compare
AO356_19795 -3.9 -4.6 glycerol-3-phosphate dehydrogenase compare
AO356_21470 -3.8 -6.4 O-succinylhomoserine sulfhydrylase compare
AO356_06550 -3.8 -9.4 2-isopropylmalate synthase compare
AO356_16050 -3.8 -2.6 glucose-6-phosphate isomerase compare
AO356_18730 -3.7 -11.7 arginine N-succinyltransferase compare
AO356_12780 -3.7 -9.0 argininosuccinate lyase compare
AO356_00560 -3.7 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_11315 -3.7 -2.5 shikimate dehydrogenase compare
AO356_12015 -3.7 -10.7 LysR family transcriptional regulator compare
AO356_05160 -3.5 -8.7 glucose-6-phosphate dehydrogenase compare
AO356_14135 -3.3 -16.2 biotin synthase compare
AO356_10300 -3.3 -4.8 3-phosphoglycerate dehydrogenase compare
AO356_05225 -3.3 -6.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_27215 -3.2 -5.3 hypothetical protein compare
AO356_09795 -3.2 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_07910 -3.2 -3.0 exodeoxyribonuclease V subunit alpha compare
AO356_17520 -3.0 -2.9 phosphoribosylformylglycinamidine synthase compare
AO356_06960 -2.9 -8.0 histidinol-phosphate aminotransferase compare
AO356_20175 -2.9 -3.4 3-oxoacyl-ACP synthase compare
AO356_15165 -2.9 -2.8 protein cII compare
AO356_07480 -2.9 -4.8 carbamoyl phosphate synthase large subunit compare
AO356_20830 -2.7 -4.3 phosphoadenosine phosphosulfate reductase compare
AO356_27180 -2.7 -4.8 hypothetical protein compare
AO356_16955 -2.7 -8.4 disulfide bond formation protein B compare
AO356_14155 -2.6 -10.1 dethiobiotin synthetase compare
AO356_07915 -2.6 -4.3 exodeoxyribonuclease V subunit beta compare
AO356_21330 -2.6 -7.4 aromatic amino acid aminotransferase compare
AO356_24845 -2.6 -4.2 ATPase compare
AO356_27210 -2.5 -8.5 hypothetical protein compare
AO356_06575 -2.5 -4.2 outer membrane protein assembly factor BamB compare
AO356_08895 -2.5 -3.4 GlcNAc-PI de-N-acetylase compare
AO356_17950 -2.5 -9.8 histidine kinase compare
AO356_10920 -2.5 -10.2 LysR family transcriptional regulator compare
AO356_27205 -2.5 -8.1 hypothetical protein compare
AO356_01745 -2.5 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_12900 -2.4 -5.5 exopolyphosphatase compare
AO356_07540 -2.3 -2.6 SsrA-binding protein compare
AO356_28300 -2.3 -2.0 hypothetical protein compare
AO356_17830 -2.3 -5.0 pyruvate kinase compare
AO356_05215 -2.3 -7.8 glucokinase compare
AO356_16070 -2.1 -7.2 poly(A) polymerase compare
AO356_05055 -2.1 -6.8 permease DsdX compare
AO356_00355 -2.1 -8.2 chemotaxis protein CheY compare
AO356_03180 -2.1 -5.6 CysB family transcriptional regulator compare
AO356_14140 -2.0 -11.4 8-amino-7-oxononanoate synthase compare
AO356_19045 -2.0 -9.8 chemotaxis protein CheY compare
AO356_13570 -2.0 -10.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_27250 -1.9 -5.0 hypothetical protein compare
AO356_05060 -1.9 -3.5 gluconokinase compare
AO356_19520 -1.9 -4.8 isochorismatase compare
AO356_05195 -1.9 -8.3 sugar ABC transporter substrate-binding protein compare
AO356_04560 -1.8 -3.3 serine peptidase compare
AO356_14150 -1.7 -7.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_01750 -1.7 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO356_05210 -1.6 -2.8 chemotaxis protein CheY compare
AO356_02465 -1.6 -3.0 carbonate dehydratase compare
AO356_18020 -1.6 -4.0 ATP-dependent DNA helicase RuvA compare
AO356_02265 -1.6 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_12005 -1.5 -8.8 transcriptional regulator compare
AO356_07370 -1.5 -5.2 nicotinate-nucleotide pyrophosphorylase compare
AO356_19085 -1.5 -5.7 phosphoribosylglycinamide formyltransferase compare
AO356_27230 -1.5 -3.8 hypothetical protein compare
AO356_14145 -1.5 -5.9 transporter compare
AO356_05205 -1.5 -6.7 histidine kinase compare
AO356_18025 -1.5 -3.1 ATP-dependent DNA helicase RuvB compare
AO356_19180 -1.5 -4.2 cobalamin synthase compare
AO356_05180 -1.5 -6.2 sugar ABC transporter ATP-binding protein compare
AO356_06995 -1.5 -5.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_18775 -1.5 -3.5 aspartate kinase compare
AO356_13685 -1.4 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_05190 -1.4 -10.7 sugar ABC transporter permease compare
AO356_10005 -1.4 -6.6 branched-chain amino acid permease (azaleucine resistance) compare
AO356_09300 -1.4 -1.6 type II secretory protein PulM compare
AO356_08890 -1.4 -6.5 glycosyltransferase compare
AO356_17890 -1.4 -2.0 H-NS histone compare
AO356_02290 -1.4 -3.0 TetR family transcriptional regulator compare
AO356_10000 -1.3 -3.8 hypothetical protein compare
AO356_18910 -1.3 -8.2 chemotaxis protein compare
AO356_19135 -1.3 -4.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_03800 -1.3 -2.3 histidine kinase compare
AO356_24485 -1.3 -2.7 SAM-dependent methyltransferase compare
AO356_08235 -1.3 -7.0 histidine kinase compare
AO356_19050 -1.3 -2.4 cysteine synthase compare
AO356_10075 -1.3 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_16670 -1.2 -7.2 adenylylsulfate kinase compare
AO356_05185 -1.2 -5.9 sugar ABC transporter permease compare
AO356_16850 -1.2 -6.4 serine hydroxymethyltransferase compare
AO356_08300 -1.2 -2.9 cobalt-precorrin-6X reductase compare
AO356_08275 -1.2 -2.7 precorrin isomerase compare
AO356_29990 -1.2 -2.0 cupin compare
AO356_13700 -1.2 -4.3 hypothetical protein compare
AO356_04275 -1.1 -1.6 3-oxoacyl-ACP synthase compare
AO356_18805 -1.1 -1.4 magnesium transporter compare
AO356_03360 -1.1 -2.8 hypothetical protein compare
AO356_30345 -1.1 -4.4 IclR family transcriptional regulator compare
AO356_19165 -1.1 -3.1 adenosylcobinamide kinase compare
AO356_16665 -1.1 -7.5 sulfate adenylyltransferase compare
AO356_17485 -1.1 -4.1 elongation factor 4 compare
AO356_11990 -1.1 -7.3 DNA helicase II compare
AO356_12380 -1.1 -4.5 ATP-dependent DNA helicase RecG compare
AO356_12990 -1.1 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
AO356_06385 -1.1 -2.4 recombinase XerD compare
AO356_06065 -1.0 -2.0 ArsC family transcriptional regulator compare
AO356_03210 -1.0 -1.9 hypothetical protein compare
AO356_11025 -1.0 -2.8 transcriptional regulator PhoU compare
AO356_15420 -1.0 -3.1 hypothetical protein compare
AO356_06685 -1.0 -1.5 preprotein translocase subunit YajC compare
AO356_10330 -1.0 -7.4 threonine dehydratase compare
AO356_03350 -1.0 -5.1 glycosyl transferase compare
AO356_02190 -1.0 -4.2 hypothetical protein compare
AO356_00545 -0.9 -5.7 methionine synthase compare
AO356_08585 -0.9 -2.5 50S ribosomal protein L9 compare
AO356_18735 -0.9 -2.5 arginine N-succinyltransferase compare
AO356_06990 -0.9 -3.3 toluene tolerance protein compare
AO356_16080 -0.9 -4.8 ATPase compare
AO356_19150 -0.9 -3.2 cobalamin biosynthesis protein CobD compare
AO356_19140 -0.9 -6.1 cobyrinic acid a,c-diamide synthase compare
AO356_15545 -0.9 -3.0 GNAT family acetyltransferase compare
AO356_03070 -0.9 -6.2 histidine kinase compare
AO356_10585 -0.9 -5.7 hypothetical protein compare
AO356_00520 -0.9 -1.9 cobalt transporter compare
AO356_16450 -0.9 -2.6 GTP-binding protein compare
AO356_14335 -0.9 -2.5 rRNA methyltransferase compare
AO356_15295 -0.9 -2.3 nicotinate-nucleotide adenylyltransferase compare
AO356_09425 -0.9 -4.8 malate dehydrogenase compare
AO356_12725 -0.9 -2.9 recombinase XerC compare
AO356_00995 -0.9 -4.0 carbon storage regulator CsrA compare
AO356_21410 -0.9 -1.4 SAM-dependent methyltransferase compare
AO356_25395 -0.9 -1.9 fimbrial assembly protein FimA compare
AO356_27965 -0.9 -1.7 benzaldehyde dehydrogenase compare
AO356_02315 -0.9 -2.6 DNA topoisomerase I compare
AO356_11055 -0.8 -3.2 long-chain acyl-CoA thioester hydrolase compare
AO356_12735 -0.8 -1.4 diaminopimelate epimerase compare
AO356_00530 -0.8 -2.6 precorrin-4 C11-methyltransferase compare
AO356_09730 -0.8 -2.8 nitrogen regulation protein NR(I) compare
AO356_18000 -0.8 -1.1 FmdB family transcriptional regulator compare
AO356_19160 -0.8 -4.1 cobyric acid synthase compare
AO356_27235 -0.8 -2.9 hypothetical protein compare
AO356_17070 -0.8 -1.9 cytochrome B compare
AO356_08135 -0.8 -1.9 MFS transporter compare
AO356_25420 -0.8 -2.3 chemotaxis protein CheY compare
AO356_25580 -0.8 -2.4 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
AO356_06605 -0.8 -2.5 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_20475 -0.8 -1.7 hypothetical protein compare
AO356_05080 -0.8 -1.1 peptide deformylase compare
AO356_13485 -0.8 -1.9 chemotaxis protein CheY compare
AO356_26910 -0.8 -1.9 hypothetical protein compare
AO356_01755 -0.8 -2.1 trigger factor compare
AO356_29355 -0.8 -1.2 hypothetical protein compare
AO356_11675 -0.8 -4.6 chromosome partitioning protein compare
AO356_02460 -0.8 -1.2 hypothetical protein compare
AO356_08610 -0.8 -3.2 exoribonuclease R compare
AO356_28020 -0.8 -2.6 ethanol oxidation regulatory protein ercA (from data) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in pH experiments