Experiment set6IT081 for Methanococcus maripaludis S2

Compare to:

formate N-free with 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMP_RS05550 -4.7 -1.0 cation:proton antiporter compare
MMP_RS07345 -4.7 -10.8 glycine synthesis protein GlyXL (from data) compare
MMP_RS07845 -4.3 -3.2 LL-diaminopimelate aminotransferase compare
MMP_RS05500 -4.2 -10.8 2-isopropylmalate synthase compare
MMP_RS01175 -4.1 -6.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03435 -4.0 -2.8 ketol-acid reductoisomerase compare
MMP_RS06350 -3.9 -9.5 HesA/MoeB/ThiF family protein compare
MMP_RS03015 -3.9 -13.9 GTP 3' 8-cyclase MoaA compare
MMP_RS06680 -3.8 -21.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06355 -3.8 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01020 -3.7 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05515 -3.6 -9.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06685 -3.6 -16.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06715 -3.5 -24.2 cache domain-containing protein compare
MMP_RS06720 -3.5 -10.2 response regulator transcription factor compare
MMP_RS01455 -3.5 -13.1 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07735 -3.4 -1.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04215 -3.4 -10.7 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS03035 -3.3 -6.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02010 -3.3 -13.7 PHP domain-containing protein compare
MMP_RS03315 -3.3 -2.0 ferrous iron transport protein A compare
MMP_RS06345 -3.3 -16.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07635 -3.3 -12.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03450 -3.3 -3.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS06700 -3.2 -15.5 hypothetical protein compare
MMP_RS04900 -3.0 -23.7 hypothetical protein compare
MMP_RS04615 -3.0 -5.9 PDGLE domain-containing protein compare
MMP_RS07365 -3.0 -17.6 2-phosphoglycerate kinase compare
MMP_RS01005 -3.0 -2.0 riboflavin synthase compare
MMP_RS00300 -3.0 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06730 -2.9 -2.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS08635 -2.9 -3.1 UbiA family prenyltransferase compare
MMP_RS06375 -2.9 -7.6 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08940 -2.8 -2.1 MetS family NSS transporter small subunit compare
MMP_RS07730 -2.8 -3.5 pyruvate synthase subunit beta compare
MMP_RS06270 -2.8 -7.0 TIGR00300 family protein compare
MMP_RS07185 -2.8 -15.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01700 -2.8 -1.4 dihydroxy-acid dehydratase compare
MMP_RS06705 -2.7 -7.9 formate/nitrite transporter family protein compare
MMP_RS04605 -2.7 -8.3 cobalt ECF transporter T component CbiQ compare
MMP_RS05425 -2.7 -6.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS00295 -2.6 -3.8 gamma carbonic anhydrase family protein compare
MMP_RS02280 -2.6 -1.4 DUF211 domain-containing protein compare
MMP_RS05875 -2.5 -7.6 hydroxyethylthiazole kinase compare
MMP_RS06105 -2.5 -10.8 hydrogenase maturation peptidase HycI compare
MMP_RS05555 -2.5 -2.2 DUF4040 domain-containing protein compare
MMP_RS00040 -2.5 -6.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06295 -2.5 -9.3 methanogenesis marker 14 protein compare
MMP_RS04620 -2.4 -11.8 cobalt transporter CbiM compare
MMP_RS03640 -2.4 -5.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07445 -2.3 -7.5 helix-turn-helix domain-containing protein compare
MMP_RS06175 -2.3 -8.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS07525 -2.3 -10.4 4Fe-4S binding protein compare
MMP_RS05930 -2.3 -3.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS08820 -2.3 -6.8 hypothetical protein compare
MMP_RS08300 -2.3 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS02195 -2.3 -4.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08165 -2.2 -2.8 phosphoglycerate dehydrogenase compare
MMP_RS02355 -2.2 -4.6 30S ribosomal protein S27ae compare
MMP_RS01265 -2.2 -3.1 hypothetical protein compare
MMP_RS01195 -2.2 -1.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05265 -2.1 -2.7 2-isopropylmalate synthase compare
MMP_RS08745 -2.1 -7.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00305 -2.1 -2.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS05085 -2.1 -11.1 AAA family ATPase compare
MMP_RS01500 -2.1 -4.0 CBS domain-containing protein compare
MMP_RS07380 -2.0 -3.2 transcription elongation factor Spt5 compare
MMP_RS08715 -2.0 -2.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS05060 -2.0 -11.2 AAA family ATPase compare
MMP_RS06400 -2.0 -2.5 4Fe-4S binding protein compare
MMP_RS09020 -2.0 -2.3 hypothetical protein compare
MMP_RS04585 -2.0 -11.4 AIR synthase related protein compare
MMP_RS02340 -2.0 -2.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05090 -2.0 -10.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05765 -2.0 -8.3 M42 family metallopeptidase compare
MMP_RS01985 -2.0 -6.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08790 -2.0 -3.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS00115 -1.9 -11.9 radical SAM protein compare
MMP_RS07630 -1.9 -2.4 ATP-binding cassette domain-containing protein compare
MMP_RS01220 -1.9 -8.6 hypothetical protein compare
MMP_RS05100 -1.9 -13.4 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS04870 -1.9 -7.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS05095 -1.8 -6.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01545 -1.8 -1.5 CBS domain-containing protein compare
MMP_RS07555 -1.8 -1.0 monovalent cation/H+ antiporter subunit E compare
MMP_RS03600 -1.8 -2.4 triose-phosphate isomerase compare
MMP_RS06625 -1.8 -2.4 DNA primase compare
MMP_RS05075 -1.8 -11.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS06285 -1.8 -4.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01755 -1.8 -1.6 DUF2097 domain-containing protein compare
MMP_RS05080 -1.7 -8.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS06975 -1.7 -3.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05055 -1.7 -12.2 DUF166 domain-containing protein compare
MMP_RS02800 -1.7 -5.7 nucleotidyltransferase domain-containing protein compare
MMP_RS03025 -1.7 -6.5 molybdenum cofactor guanylyltransferase compare
MMP_RS06840 -1.7 -1.2 DNA-directed RNA polymerase subunit N compare
MMP_RS08330 -1.6 -6.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS04500 -1.6 -12.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS00685 -1.6 -4.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08720 -1.6 -2.2 4Fe-4S binding protein compare
MMP_RS01800 -1.6 -3.2 TIGR00303 family protein compare
MMP_RS08460 -1.6 -3.0 proteasome-activating nucleotidase compare
MMP_RS01365 -1.6 -4.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06200 -1.6 -6.9 M24 family metallopeptidase compare
MMP_RS06865 -1.6 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06925 -1.6 -3.1 ribonuclease VapC4 compare
MMP_RS06340 -1.5 -7.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00620 -1.5 -6.0 4Fe-4S binding protein compare
MMP_RS01250 -1.5 -4.3 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06315 -1.5 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07575 -1.5 -5.5 RNA ligase partner protein compare
MMP_RS00555 -1.5 -5.1 MFS transporter compare
MMP_RS02235 -1.5 -6.4 CBS domain-containing protein compare
MMP_RS04875 -1.5 -6.1 energy-converting hydrogenase B subunit P compare
MMP_RS06370 -1.5 -5.0 biotin synthase BioB compare
MMP_RS05540 -1.4 -2.5 hypothetical protein compare
MMP_RS08100 -1.4 -6.0 8-amino-7-oxononanoate synthase compare
MMP_RS07580 -1.4 -3.7 DUF356 domain-containing protein compare
MMP_RS04780 -1.4 -2.5 ribonuclease P compare
MMP_RS05065 -1.4 -3.5 CooT family nickel-binding protein compare
MMP_RS01830 -1.4 -2.1 tRNA-Val compare
MMP_RS01085 -1.4 -2.0 hypothetical protein compare
MMP_RS05925 -1.4 -4.0 small nuclear ribonucleoprotein compare
MMP_RS01380 -1.4 -4.5 PHP domain-containing protein compare
MMP_RS04775 -1.4 -3.0 adenosylhomocysteinase compare
MMP_RS00455 -1.4 -7.8 orotate phosphoribosyltransferase-like protein compare
MMP_RS07545 -1.4 -1.3 HTH domain-containing protein compare
MMP_RS04890 -1.3 -0.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02240 -1.3 -3.8 methanogenesis marker 7 protein compare
MMP_RS05070 -1.3 -5.3 4Fe-4S dicluster domain-containing protein compare
MMP_RS08210 -1.3 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS07645 -1.3 -5.9 aldehyde dehydrogenase family protein compare
MMP_RS01075 -1.3 -1.4 hypothetical protein compare
MMP_RS06020 -1.3 -4.6 archaeoflavoprotein AfpA compare
MMP_RS08095 -1.2 -4.7 dethiobiotin synthase compare
MMP_RS05245 -1.2 -7.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS09055 -1.2 -1.2 CAP domain-containing protein compare
MMP_RS00895 -1.2 -3.7 hypothetical protein compare
MMP_RS08645 -1.2 -5.6 UPF0179 family protein compare
MMP_RS05430 -1.2 -4.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS08105 -1.2 -6.5 6-carboxyhexanoate--CoA ligase compare
MMP_RS07355 -1.2 -1.1 transcription factor S compare
MMP_RS01610 -1.2 -3.1 hypothetical protein compare
MMP_RS08320 -1.2 -5.1 molybdopterin molybdotransferase MoeA compare
MMP_RS00535 -1.2 -2.3 TIGR00375 family protein compare
MMP_RS01745 -1.2 -3.4 AMP phosphorylase compare
MMP_RS07605 -1.2 -3.1 diadenylate cyclase compare
MMP_RS03445 -1.2 -1.0 methanogenesis marker 17 protein compare
MMP_RS03485 -1.1 -3.5 TIGR00267 family protein compare
MMP_RS03140 -1.1 -6.4 hypothetical protein compare
MMP_RS07710 -1.1 -4.9 cell division protein FtsZ compare
MMP_RS03305 -1.1 -3.7 winged helix-turn-helix domain-containing protein compare
MMP_RS06475 -1.1 -2.8 FAD-dependent oxidoreductase compare
MMP_RS01720 -1.1 -1.6 replication factor C large subunit compare
MMP_RS05845 -1.1 -1.8 tRNA-intron lyase compare
MMP_RS04125 -1.1 -2.7 TetR/AcrR family transcriptional regulator compare
MMP_RS02165 -1.1 -3.8 tRNA-dihydrouridine synthase compare
MMP_RS07720 -1.1 -6.1 4Fe-4S binding protein compare
MMP_RS01225 -1.1 -4.2 DUF5379 domain-containing protein compare
MMP_RS05865 -1.1 -1.0 hypothetical protein compare
MMP_RS08615 -1.1 -1.6 flagellar protein G compare
MMP_RS00290 -1.1 -4.3 hypothetical protein compare
MMP_RS01140 -1.0 -1.8 molybdate ABC transporter permease subunit compare
MMP_RS06130 -1.0 -3.5 peptidylprolyl isomerase compare
MMP_RS07535 -1.0 -5.3 4Fe-4S binding protein compare
MMP_RS05850 -1.0 -2.6 Ldh family oxidoreductase compare
MMP_RS02900 -1.0 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04790 -1.0 -6.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06855 -1.0 -6.2 hypothetical protein compare
MMP_RS02345 -1.0 -1.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04695 -1.0 -3.6 selenide water dikinase SelD compare
MMP_RS03145 -1.0 -4.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS03555 -1.0 -4.2 transcriptional regulator compare
MMP_RS03580 -1.0 -2.8 signal recognition particle-docking protein FtsY compare
MMP_RS01325 -1.0 -2.2 dihydroneopterin aldolase family protein compare
MMP_RS06230 -1.0 -1.7 helix-turn-helix domain-containing protein compare
MMP_RS02885 -1.0 -6.6 molybdopterin biosynthesis protein compare
MMP_RS05345 -0.9 -4.1 hypothetical protein compare
MMP_RS08240 -0.9 -5.1 methanogenesis marker 16 metalloprotein compare
MMP_RS07705 -0.9 -4.6 transcriptional regulator compare
MMP_RS07200 -0.9 -4.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02170 -0.9 -3.0 CBS domain-containing protein compare
MMP_RS01570 -0.9 -1.5 hypothetical protein compare
MMP_RS00750 -0.9 -1.6 fumarate hydratase compare
MMP_RS00705 -0.9 -2.3 hypothetical protein compare
MMP_RS06630 -0.9 -0.7 UPF0058 family protein compare
MMP_RS08725 -0.9 -1.6 Ni/Fe hydrogenase subunit alpha compare
MMP_RS03205 -0.9 -1.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00810 -0.9 -3.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01440 -0.9 -2.8 NAAT family transporter compare
MMP_RS01445 -0.9 -2.9 hypothetical protein compare
MMP_RS01790 -0.9 -3.0 restriction endonuclease compare
MMP_RS06885 -0.9 -1.7 50S ribosome-binding GTPase compare
MMP_RS04685 -0.8 -2.1 DUF126 domain-containing protein compare
MMP_RS02175 -0.8 -0.7 DUF1611 domain-containing protein compare
MMP_RS08200 -0.8 -5.5 archaeosine synthase subunit alpha compare
MMP_RS07195 -0.8 -4.9 M20 family metallo-hydrolase compare
MMP_RS00695 -0.8 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02135 -0.8 -2.4 DUF5612 domain-containing protein compare
MMP_RS06895 -0.8 -1.2 selenocysteine-specific translation elongation factor compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms