Experiment set6IT081 for Methanococcus maripaludis S2

Compare to:

formate N-free with 10mM Ammonium chloride

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +1.5 8.6 acetate--CoA ligase family protein compare
MMP_RS06600 +1.1 2.0 class III signal peptide-containing protein compare
MMP_RS06395 +1.0 4.3 ThiF family adenylyltransferase compare
MMP_RS06575 +0.9 4.2 fluoride efflux transporter CrcB compare
MMP_RS07695 +0.9 4.4 DUF3236 domain-containing protein compare
MMP_RS07125 +0.9 3.0 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02490 +0.8 3.7 hypothetical protein compare
MMP_RS02470 +0.8 1.5 helix-turn-helix transcriptional regulator compare
MMP_RS06585 +0.8 1.7 DMT family protein compare
MMP_RS00315 +0.7 2.9 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS05970 +0.7 3.2 class II SORL domain-containing protein compare
MMP_RS08930 +0.7 1.7 hypothetical protein compare
MMP_RS07815 +0.7 1.1 DUF2120 domain-containing protein compare
MMP_RS06535 +0.7 2.6 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS06525 +0.7 1.2 YciI family protein compare
MMP_RS05720 +0.7 3.7 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS07130 +0.7 4.0 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS01540 +0.7 2.0 DUF504 domain-containing protein compare
MMP_RS07115 +0.7 3.0 MBL fold metallo-hydrolase compare
MMP_RS03215 +0.7 4.5 MBL fold metallo-hydrolase compare
MMP_RS01775 +0.7 1.1 TIGR00297 family protein compare
MMP_RS00395 +0.6 1.3 MGMT family protein compare
MMP_RS08555 +0.6 1.9 hypothetical protein compare
MMP_RS08455 +0.6 2.5 multiprotein bridging factor aMBF1 compare
MMP_RS06610 +0.6 2.3 DUF2334 domain-containing protein compare
MMP_RS03615 +0.6 4.5 4Fe-4S binding protein compare
MMP_RS07120 +0.6 3.3 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS02265 +0.6 2.1 nitroreductase family protein compare
MMP_RS02675 +0.6 1.1 hypothetical protein compare
MMP_RS01620 +0.6 3.0 hypothetical protein compare
MMP_RS07700 +0.6 3.6 DUF1188 domain-containing protein compare
MMP_RS08265 +0.6 2.2 rubrerythrin compare
MMP_RS00825 +0.6 2.2 fumarylacetoacetate hydrolase family protein compare
MMP_RS03245 +0.6 2.8 DNA repair and recombination protein RadB compare
MMP_RS04850 +0.6 4.6 UPF0254 family protein compare
MMP_RS01435 +0.6 2.4 DMT family transporter compare
MMP_RS03840 +0.5 2.6 hypothetical protein compare
MMP_RS07875 +0.5 3.6 hypothetical protein compare
MMP_RS06550 +0.5 3.1 AMP-binding protein compare
MMP_RS08470 +0.5 3.8 ATP-binding cassette domain-containing protein compare
MMP_RS08995 +0.5 0.8 hypothetical protein compare
MMP_RS07820 +0.5 2.2 UPF0104 family protein compare
MMP_RS08835 +0.5 3.5 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS01880 +0.5 2.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06965 +0.5 2.8 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS05640 +0.5 3.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07970 +0.5 1.7 hypothetical protein compare
MMP_RS08500 +0.5 2.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS08705 +0.5 3.2 sulfopyruvate decarboxylase subunit beta compare
MMP_RS07915 +0.5 1.8 DUF4870 domain-containing protein compare
MMP_RS00635 +0.5 2.4 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS05355 +0.5 0.6 hypothetical protein compare
MMP_RS08775 +0.5 1.8 methanogenesis marker 9 domain-containing protein compare
MMP_RS02745 +0.5 1.5 hypothetical protein compare
MMP_RS08275 +0.5 2.4 hypothetical protein compare
MMP_RS00660 +0.5 2.9 alkaline phosphatase family protein compare
MMP_RS01335 +0.5 1.0 prefoldin subunit beta compare
MMP_RS06435 +0.5 2.6 CBS domain-containing protein compare
MMP_RS00955 +0.5 3.3 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS04740 +0.5 2.3 DUF473 domain-containing protein compare
MMP_RS03385 +0.5 0.7 cation diffusion facilitator family transporter compare
MMP_RS01940 +0.5 1.9 MoxR family ATPase compare
MMP_RS01650 +0.5 0.5 sulfurtransferase TusA family protein compare
MMP_RS00725 +0.5 1.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01100 +0.5 0.8 ABC transporter ATP-binding protein compare
MMP_RS00735 +0.5 1.8 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS03280 +0.5 2.7 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS02835 +0.4 2.0 CGGC domain-containing protein compare
MMP_RS02720 +0.4 2.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS01930 +0.4 3.5 hypothetical protein compare
MMP_RS00940 +0.4 2.5 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS07890 +0.4 0.9 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS05525 +0.4 2.2 calcium/sodium antiporter compare
MMP_RS01155 +0.4 2.7 XRE family transcriptional regulator compare
MMP_RS06365 +0.4 1.3 hypothetical protein compare
MMP_RS01460 +0.4 2.0 hypothetical protein compare
MMP_RS05140 +0.4 1.7 helix-turn-helix transcriptional regulator compare
MMP_RS00730 +0.4 1.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS08640 +0.4 2.6 TIM barrel protein compare
MMP_RS01055 +0.4 2.1 hypothetical protein compare
MMP_RS06670 +0.4 1.8 glucose-6-phosphate isomerase compare
MMP_RS04945 +0.4 1.6 hypothetical protein compare
MMP_RS01975 +0.4 3.3 hypothetical protein compare
MMP_RS02415 +0.4 1.2 site-specific integrase compare
MMP_RS04595 +0.4 2.6 hypothetical protein compare
MMP_RS08440 +0.4 0.9 cell division protein SepF compare
MMP_RS01115 +0.4 1.8 molybdopterin molybdotransferase MoeA compare
MMP_RS01950 +0.4 2.6 hypothetical protein compare
MMP_RS02475 +0.4 0.8 hypothetical protein compare
MMP_RS08090 +0.4 1.9 hypothetical protein compare
MMP_RS06745 +0.4 1.7 DUF2119 domain-containing protein compare
MMP_RS03065 +0.4 1.1 AzlC family ABC transporter permease compare
MMP_RS07770 +0.4 1.6 alanine racemase compare
MMP_RS01895 +0.4 3.0 flippase compare
MMP_RS08620 +0.4 2.5 flagellar accessory protein FlaH compare
MMP_RS05535 +0.4 1.6 hypothetical protein compare
MMP_RS01060 +0.4 2.4 calcium/sodium antiporter compare
MMP_RS07560 +0.4 1.5 prefoldin subunit alpha compare
MMP_RS01885 +0.4 2.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05700 +0.4 2.6 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS07850 +0.4 1.1 prephenate dehydratase compare
MMP_RS02390 +0.4 1.8 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS07895 +0.4 1.7 cytochrome c compare
MMP_RS05825 +0.4 1.3 peptidyl-prolyl cis-trans isomerase compare
MMP_RS06500 +0.4 2.1 ATP-binding protein compare
MMP_RS01080 +0.4 1.1 DUF2202 domain-containing protein compare
MMP_RS03490 +0.4 0.8 DUF2115 domain-containing protein compare
MMP_RS06570 +0.4 1.2 DUF190 domain-containing protein compare
MMP_RS08155 +0.4 1.5 hypothetical protein compare
MMP_RS00795 +0.4 2.2 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00185 +0.4 2.3 potassium channel protein compare
MMP_RS02805 +0.4 0.5 HEPN domain-containing protein compare
MMP_RS06940 +0.4 1.1 polyprenyl diphosphate synthase compare
MMP_RS05940 +0.4 1.6 corrinoid protein compare
MMP_RS04015 +0.3 0.8 hypothetical protein compare
MMP_RS02915 +0.3 1.8 amino acid ABC transporter permease compare
MMP_RS08315 +0.3 1.3 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS01130 +0.3 1.6 flavoprotein compare
MMP_RS02495 +0.3 1.1 hypothetical protein compare
MMP_RS05360 +0.3 1.6 hypothetical protein compare
MMP_RS06150 +0.3 2.3 hypothetical protein compare
MMP_RS05470 +0.3 2.0 DUF523 and DUF1722 domain-containing protein compare
MMP_RS07540 +0.3 0.8 CBS domain-containing protein compare
MMP_RS00910 +0.3 1.6 2-phosphosulfolactate phosphatase compare
MMP_RS08160 +0.3 1.7 EamA family transporter compare
MMP_RS03785 +0.3 1.2 cupin domain-containing protein compare
MMP_RS05835 +0.3 0.3 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS01910 +0.3 2.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS05275 +0.3 2.4 AI-2E family transporter compare
MMP_RS05820 +0.3 1.5 RNA-binding transcriptional accessory protein compare
MMP_RS02965 +0.3 1.8 carboxymuconolactone decarboxylase family protein compare
MMP_RS00140 +0.3 0.9 DUF192 domain-containing protein compare
MMP_RS02380 +0.3 1.5 ATP-binding protein compare
MMP_RS00105 +0.3 2.2 hypothetical protein compare
MMP_RS00800 +0.3 2.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07135 +0.3 1.5 coenzyme F420 hydrogenase subunit beta compare
MMP_RS00675 +0.3 0.4 nitroreductase family protein compare
MMP_RS08130 +0.3 2.0 IGHMBP2 family helicase compare
MMP_RS06065 +0.3 2.5 iron ABC transporter substrate-binding protein compare
MMP_RS06545 +0.3 1.6 ferredoxin family protein compare
MMP_RS08755 +0.3 2.1 sodium:solute symporter family protein compare
MMP_RS06440 +0.3 1.6 CBS domain-containing protein compare
MMP_RS05980 +0.3 2.0 ferritin compare
MMP_RS01580 +0.3 2.0 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS05945 +0.3 0.9 CBS domain-containing protein compare
MMP_RS00645 +0.3 2.0 iron ABC transporter permease compare
MMP_RS08430 +0.3 1.4 HAD family hydrolase compare
MMP_RS00085 +0.3 2.0 DNA cytosine methyltransferase compare
MMP_RS07620 +0.3 1.1 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS08175 +0.3 1.5 7-cyano-7-deazaguanine synthase compare
MMP_RS04970 +0.3 2.2 F420-dependent thioredoxin reductase compare
MMP_RS05615 +0.3 2.0 radical SAM protein compare
MMP_RS08590 +0.3 1.3 flagellin compare
MMP_RS06185 +0.3 1.6 thermonuclease family protein compare
MMP_RS00665 +0.3 1.6 hypothetical protein compare
MMP_RS02290 +0.3 1.6 MBL fold metallo-hydrolase compare
MMP_RS01980 +0.3 2.1 trimeric intracellular cation channel family protein compare
MMP_RS01210 +0.3 1.6 sodium:solute symporter compare
MMP_RS08890 +0.3 2.3 glycosyltransferase family 4 protein compare
MMP_RS09030 +0.3 1.3 hypothetical protein compare
MMP_RS06290 +0.3 1.1 DNA repair and recombination protein RadA compare
MMP_RS05675 +0.3 1.0 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS06010 +0.3 1.7 heavy metal translocating P-type ATPase compare
MMP_RS08310 +0.3 0.7 TMEM165/GDT1 family protein compare
MMP_RS00880 +0.3 1.1 ribosome assembly RNA-binding protein YhbY compare
MMP_RS05770 +0.3 1.0 YkgJ family cysteine cluster protein compare
MMP_RS01095 +0.3 1.2 iron ABC transporter permease compare
MMP_RS01640 +0.3 2.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS04175 +0.3 2.1 permease compare
MMP_RS00630 +0.3 1.9 ECF transporter S component compare
MMP_RS05110 +0.3 1.5 16S ribosomal RNA methyltransferase A compare
MMP_RS06900 +0.3 0.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS03010 +0.3 2.0 cupin domain-containing protein compare
MMP_RS09025 +0.3 0.4 hypothetical protein compare
MMP_RS08605 +0.3 1.0 flagellar protein E compare
MMP_RS02910 +0.3 1.0 ABC transporter substrate-binding protein compare
MMP_RS05150 +0.3 1.6 hypothetical protein compare
MMP_RS07150 +0.3 0.9 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS05960 +0.3 1.6 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS02795 +0.3 1.9 sulfate permease compare
MMP_RS03320 +0.3 0.7 metal-dependent transcriptional regulator compare
MMP_RS07385 +0.3 0.5 protein translocase SEC61 complex subunit gamma compare
MMP_RS04475 +0.2 1.3 nitrogen fixation compare
MMP_RS08480 +0.2 1.6 molybdate ABC transporter substrate-binding protein compare
MMP_RS02605 +0.2 0.3 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS06080 +0.2 1.7 radical SAM protein compare
MMP_RS01945 +0.2 1.3 DUF4350 domain-containing protein compare
MMP_RS01865 +0.2 0.5 GPR1/FUN34/YaaH family transporter compare
MMP_RS07390 +0.2 0.6 cell division protein FtsZ compare
MMP_RS00125 +0.2 0.4 DUF2798 domain-containing protein compare
MMP_RS04550 +0.2 2.0 S-layer protein compare
MMP_RS03870 +0.2 1.2 purine NTPase compare
MMP_RS05635 +0.2 1.6 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS06055 +0.2 1.0 peroxiredoxin compare
MMP_RS06560 +0.2 1.4 hypothetical protein compare
MMP_RS03740 +0.2 0.8 indolepyruvate oxidoreductase subunit beta compare
MMP_RS04250 +0.2 1.0 PC4/YdbC family ssDNA-binding protein compare
MMP_RS08625 +0.2 1.4 type II/IV secretion system ATPase subunit compare
MMP_RS07650 +0.2 1.6 TldD/PmbA family protein compare
MMP_RS00145 +0.2 1.1 ATP-dependent Clp protease proteolytic subunit compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms