Experiment set6IT080 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium iodate 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5068 -4.4 -12.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2181 -4.3 -2.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2397 -4.3 -4.1 Two-component system response regulator QseB compare
Pf6N2E2_5069 -4.2 -6.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3834 -3.5 -7.8 Lipoprotein NlpD compare
Pf6N2E2_2010 -3.4 -2.3 hypothetical protein compare
Pf6N2E2_4585 -3.3 -13.2 Cell division protein FtsX compare
Pf6N2E2_40 -3.3 -5.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5178 -3.3 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4369 -3.2 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3908 -3.1 -5.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3658 -3.1 -7.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3665 -3.1 -1.6 serine/threonine protein kinase compare
Pf6N2E2_4372 -3.1 -5.4 FIG00460773: hypothetical protein compare
Pf6N2E2_3303 -3.0 -4.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3252 -2.9 -7.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3839 -2.9 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5103 -2.8 -1.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3661 -2.8 -3.3 hypothetical protein compare
Pf6N2E2_4451 -2.8 -6.5 FIG139438: lipoprotein B compare
Pf6N2E2_5150 -2.8 -5.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5727 -2.8 -6.5 FIG00955360: hypothetical protein compare
Pf6N2E2_3460 -2.8 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4352 -2.8 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3659 -2.7 -5.7 Protein fixF compare
Pf6N2E2_2384 -2.7 -5.0 CmpX compare
Pf6N2E2_2396 -2.6 -5.3 Sensor histidine kinase compare
Pf6N2E2_5705 -2.5 -2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1056 -2.4 -1.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2574 -2.4 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_3941 -2.4 -3.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5242 -2.3 -3.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5316 -2.2 -2.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_144 -2.2 -14.4 Uncharacterized protein YtfM precursor compare
Pf6N2E2_2274 -2.2 -5.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3607 -2.1 -7.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4612 -2.1 -5.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5527 -2.1 -2.4 Cold shock protein CspC compare
Pf6N2E2_2127 -2.1 -4.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3253 -2.0 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2320 -2.0 -3.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3841 -1.9 -4.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_145 -1.9 -8.4 putative exported protein compare
Pf6N2E2_5342 -1.9 -3.5 21 kDa hemolysin precursor compare
Pf6N2E2_546 -1.8 -1.7 FIG00966904: hypothetical protein compare
Pf6N2E2_3617 -1.8 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2999 -1.8 -1.9 probable tail fiber assembly protein compare
Pf6N2E2_2264 -1.8 -3.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5155 -1.8 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1099 -1.8 -1.8 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_3842 -1.8 -3.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5245 -1.8 -6.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2219 -1.8 -2.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3847 -1.7 -3.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5544 -1.7 -7.0 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2218 -1.7 -3.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4611 -1.7 -3.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2509 -1.6 -2.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3833 -1.6 -3.3 hypothetical protein compare
Pf6N2E2_5014 -1.6 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5406 -1.6 -2.5 FIG00958224: hypothetical protein compare
Pf6N2E2_3791 -1.5 -7.6 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3260 -1.5 -4.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2506 -1.5 -9.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_1636 -1.5 -6.8 Ferrichrome-iron receptor compare
Pf6N2E2_4584 -1.5 -1.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3505 -1.5 -1.7 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5785 -1.5 -2.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4071 -1.5 -3.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2223 -1.5 -2.4 hypothetical protein compare
Pf6N2E2_3085 -1.5 -2.2 FIG00954614: hypothetical protein compare
Pf6N2E2_445 -1.5 -4.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_156 -1.5 -2.1 Carbon storage regulator compare
Pf6N2E2_3198 -1.4 -1.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4057 -1.4 -1.2 lipoprotein, putative compare
Pf6N2E2_2755 -1.4 -1.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5156 -1.4 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2984 -1.4 -2.3 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5425 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_4416 -1.4 -2.0 Tyrosine recombinase XerC compare
Pf6N2E2_3782 -1.4 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3258 -1.3 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2126 -1.3 -4.7 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3610 -1.3 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4454 -1.3 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2261 -1.3 -4.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_6064 -1.3 -3.7 2-methylaconitate isomerase compare
Pf6N2E2_3199 -1.3 -4.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_405 -1.3 -1.5 hypothetical protein compare
Pf6N2E2_2510 -1.3 -3.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2201 -1.3 -3.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_2180 -1.3 -2.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3255 -1.2 -3.2 YrbA protein compare
Pf6N2E2_4803 -1.2 -1.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3132 -1.2 -2.5 FIG00954548: hypothetical protein compare
Pf6N2E2_3325 -1.2 -2.5 ABC transporter, ATP-binding protein compare
Pf6N2E2_5081 -1.2 -2.7 hypothetical protein compare
Pf6N2E2_5522 -1.2 -2.9 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_5261 -1.2 -1.2 FIG00956983: hypothetical protein compare
Pf6N2E2_5338 -1.2 -5.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_136 -1.2 -2.7 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_5160 -1.2 -1.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5499 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_3351 -1.2 -2.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_1778 -1.2 -2.4 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2278 -1.2 -8.3 Transcription-repair coupling factor compare
Pf6N2E2_3666 -1.2 -3.2 InaA protein compare
Pf6N2E2_1876 -1.1 -2.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_5545 -1.1 -2.9 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_1834 -1.1 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5671 -1.1 -2.0 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3251 -1.1 -5.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2870 -1.1 -2.3 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_4743 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_760 -1.1 -6.8 Na+/H+ antiporter NhaB compare
Pf6N2E2_5339 -1.1 -4.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2018 -1.1 -2.6 hypothetical protein compare
Pf6N2E2_3940 -1.1 -5.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5986 -1.1 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2189 -1.1 -3.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3763 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_302 -1.1 -4.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_1694 -1.1 -1.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2143 -1.1 -2.5 Uncharacterized GST-like protein yncG compare
Pf6N2E2_953 -1.1 -1.5 FIG00958851: hypothetical protein compare
Pf6N2E2_2071 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_2313 -1.1 -2.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_648 -1.1 -0.8 General secretion pathway protein K compare
Pf6N2E2_4276 -1.0 -3.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1747 -1.0 -2.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3612 -1.0 -1.8 HflK protein compare
Pf6N2E2_70 -1.0 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2825 -1.0 -2.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_6058 -1.0 -3.4 FIG139976: hypothetical protein compare
Pf6N2E2_3282 -1.0 -1.6 FIG005080: Possible exported protein compare
Pf6N2E2_2034 -1.0 -2.7 Methyltransferase compare
Pf6N2E2_3783 -1.0 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3521 -1.0 -4.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_737 -1.0 -1.8 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_5430 -1.0 -5.3 Transglycosylase, Slt family compare
Pf6N2E2_1323 -1.0 -2.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2062 -1.0 -2.3 FIG00955561: hypothetical protein compare
Pf6N2E2_5006 -1.0 -4.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2176 -1.0 -1.8 Amidases related to nicotinamidase compare
Pf6N2E2_5843 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_4362 -1.0 -2.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3283 -1.0 -3.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_1376 -1.0 -2.9 probable transmembrane protein compare
Pf6N2E2_4999 -1.0 -3.2 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3611 -1.0 -0.9 HflC protein compare
Pf6N2E2_2646 -1.0 -1.4 FIG00953416: hypothetical protein compare
Pf6N2E2_3792 -1.0 -4.0 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5990 -1.0 -1.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_49 -1.0 -2.5 FIG00967200: hypothetical protein compare
Pf6N2E2_309 -1.0 -1.6 FIG00957702: hypothetical protein compare
Pf6N2E2_2425 -0.9 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5523 -0.9 -2.6 Small-conductance mechanosensitive channel compare
Pf6N2E2_1633 -0.9 -2.9 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_5944 -0.9 -3.4 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2073 -0.9 -4.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5647 -0.9 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2778 -0.9 -2.0 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_3872 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_6090 -0.9 -1.5 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_6100 -0.9 -2.1 tRNA-Val-TAC compare
Pf6N2E2_2822 -0.9 -4.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2438 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_3264 -0.9 -2.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3849 -0.9 -1.8 FIG00954739: hypothetical protein compare
Pf6N2E2_3829 -0.9 -2.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3560 -0.9 -3.4 membrane protein, putative compare
Pf6N2E2_2507 -0.9 -2.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_189 -0.9 -2.4 regulatory protein, putative compare
Pf6N2E2_2514 -0.9 -2.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4146 -0.9 -1.8 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_723 -0.9 -2.0 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_1797 -0.9 -1.6 Transcriptional regulator compare
Pf6N2E2_2311 -0.9 -4.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_434 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_6063 -0.9 -4.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_1336 -0.9 -2.0 AraC family transcription regulator compare
Pf6N2E2_5510 -0.9 -1.7 FIG00955324: hypothetical protein compare
Pf6N2E2_5328 -0.9 -1.8 FIG00958649: hypothetical protein compare
Pf6N2E2_2088 -0.9 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_1215 -0.8 -2.0 probable membrane protein YPO2362 compare
Pf6N2E2_3021 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_3587 -0.8 -2.5 Azurin compare
Pf6N2E2_1024 -0.8 -2.2 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_827 -0.8 -1.4 probable dioxygenase compare
Pf6N2E2_664 -0.8 -1.5 Acetoin catabolism protein X compare
Pf6N2E2_5704 -0.8 -3.6 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3471 -0.8 -3.0 transcriptional regulator, MerR family compare
Pf6N2E2_4908 -0.8 -3.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1673 -0.8 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2708 -0.8 -2.1 Lactam utilization protein LamB compare
Pf6N2E2_5820 -0.8 -1.4 FIG00957914: hypothetical protein compare
Pf6N2E2_2472 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_2318 -0.8 -3.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_186 -0.8 -3.1 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_292 -0.8 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare


Specific Phenotypes

For 1 genes in this experiment

For stress sodium iodate in Pseudomonas fluorescens FW300-N2E2

For stress sodium iodate across organisms