Experiment set6IT080 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Minimal media pH7

200 most important genes:

  gene name fitness t score description  
AO356_14435 -5.7 -7.8 anthranilate phosphoribosyltransferase compare
AO356_21405 -5.7 -5.5 3-isopropylmalate dehydratase compare
AO356_09815 -5.7 -6.8 imidazoleglycerol-phosphate dehydratase compare
AO356_16175 -5.5 -6.5 acetolactate synthase 3 regulatory subunit compare
AO356_14440 -5.3 -6.3 indole-3-glycerol-phosphate synthase compare
AO356_09520 -5.3 -5.2 phosphoribosyl-AMP cyclohydrolase compare
AO356_09525 -5.3 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_21440 -5.1 -10.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_12520 -5.1 -3.5 orotate phosphoribosyltransferase compare
AO356_14420 -5.0 -16.4 anthranilate synthase compare
AO356_13605 -4.9 -8.2 5,10-methylenetetrahydrofolate reductase compare
AO356_08635 -4.9 -11.4 ATP phosphoribosyltransferase regulatory subunit compare
AO356_21465 -4.9 -5.8 amidophosphoribosyltransferase compare
AO356_19090 -4.9 -3.3 phosphoribosylaminoimidazole synthetase compare
AO356_13250 -4.8 -11.7 dihydroxy-acid dehydratase compare
AO356_22200 -4.8 -9.8 sirohydrochlorin ferrochelatase compare
AO356_13410 -4.8 -13.8 homoserine O-acetyltransferase compare
AO356_00555 -4.7 -12.1 sulfite reductase compare
AO356_15165 -4.7 -4.5 protein cII compare
AO356_13405 -4.7 -11.1 methionine biosynthesis protein MetW compare
AO356_18325 -4.7 -15.2 argininosuccinate synthase compare
AO356_19795 -4.6 -3.2 glycerol-3-phosphate dehydrogenase compare
AO356_21400 -4.6 -6.0 isopropylmalate isomerase compare
AO356_12525 -4.5 -11.7 acetylglutamate kinase compare
AO356_10910 -4.5 -10.5 tryptophan synthase subunit alpha compare
AO356_16170 -4.5 -13.3 acetolactate synthase 3 catalytic subunit compare
AO356_12020 -4.4 -15.4 pyruvate carboxylase subunit A compare
AO356_16180 -4.4 -16.3 ketol-acid reductoisomerase compare
AO356_08735 -4.4 -15.4 phosphoserine phosphatase compare
AO356_18275 -4.4 -15.0 ornithine carbamoyltransferase compare
AO356_14295 -4.4 -3.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_06970 -4.3 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_09370 -4.3 -11.8 glutamate synthase compare
AO356_13085 -4.3 -12.4 N-acetylglutamate synthase compare
AO356_09375 -4.3 -21.2 glutamate synthase compare
AO356_10915 -4.3 -11.7 tryptophan synthase subunit beta compare
AO356_21415 -4.2 -11.8 3-isopropylmalate dehydrogenase compare
AO356_05160 -4.2 -9.3 glucose-6-phosphate dehydrogenase compare
AO356_06965 -4.1 -10.6 histidinol dehydrogenase compare
AO356_10340 -4.1 -15.0 phosphoserine phosphatase compare
AO356_09810 -4.1 -8.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_12015 -4.0 -13.2 LysR family transcriptional regulator compare
AO356_18730 -4.0 -12.3 arginine N-succinyltransferase compare
AO356_16075 -4.0 -5.4 Fis family transcriptional regulator compare
AO356_12025 -3.8 -14.6 pyruvate carboxylase subunit B compare
AO356_21470 -3.7 -7.4 O-succinylhomoserine sulfhydrylase compare
AO356_11315 -3.7 -2.6 shikimate dehydrogenase compare
AO356_09800 -3.7 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_07480 -3.7 -4.4 carbamoyl phosphate synthase large subunit compare
AO356_14430 -3.7 -7.6 anthranilate synthase compare
AO356_16870 -3.6 -11.3 benzoate transporter compare
AO356_16050 -3.6 -3.5 glucose-6-phosphate isomerase compare
AO356_22795 -3.5 -5.3 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_02175 -3.5 -8.6 transaldolase compare
AO356_06550 -3.4 -8.9 2-isopropylmalate synthase compare
AO356_12780 -3.3 -8.4 argininosuccinate lyase compare
AO356_14135 -3.3 -15.5 biotin synthase compare
AO356_09795 -3.3 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_10300 -3.3 -4.2 3-phosphoglycerate dehydrogenase compare
AO356_08905 -3.2 -4.3 glycosyl transferase compare
AO356_05225 -3.2 -7.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_00560 -3.1 -3.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_16955 -3.1 -9.2 disulfide bond formation protein B compare
AO356_05215 -3.1 -7.9 glucokinase compare
AO356_17890 -3.0 -4.1 H-NS histone compare
AO356_05055 -2.9 -7.4 permease DsdX compare
AO356_20830 -2.8 -5.0 phosphoadenosine phosphosulfate reductase compare
AO356_17520 -2.8 -2.7 phosphoribosylformylglycinamidine synthase compare
AO356_27180 -2.8 -5.8 hypothetical protein compare
AO356_27215 -2.8 -5.1 hypothetical protein compare
AO356_17830 -2.7 -6.2 pyruvate kinase compare
AO356_05060 -2.7 -3.7 gluconokinase compare
AO356_21330 -2.7 -11.1 aromatic amino acid aminotransferase compare
AO356_27210 -2.7 -9.4 hypothetical protein compare
AO356_06960 -2.5 -7.6 histidinol-phosphate aminotransferase compare
AO356_10920 -2.5 -8.3 LysR family transcriptional regulator compare
AO356_17950 -2.5 -10.2 histidine kinase compare
AO356_17075 -2.5 -3.7 cytochrome C compare
AO356_01740 -2.4 -4.8 DNA-binding protein compare
AO356_18025 -2.4 -3.6 ATP-dependent DNA helicase RuvB compare
AO356_15815 -2.4 -2.1 gamma-glutamyl kinase compare
AO356_24845 -2.2 -3.8 ATPase compare
AO356_12900 -2.1 -5.3 exopolyphosphatase compare
AO356_19520 -2.1 -3.9 isochorismatase compare
AO356_14140 -2.0 -10.5 8-amino-7-oxononanoate synthase compare
AO356_14150 -2.0 -8.8 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_13570 -2.0 -9.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_00355 -2.0 -7.2 chemotaxis protein CheY compare
AO356_18775 -1.9 -2.8 aspartate kinase compare
AO356_19045 -1.9 -8.6 chemotaxis protein CheY compare
AO356_08585 -1.9 -4.1 50S ribosomal protein L9 compare
AO356_01745 -1.8 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_14145 -1.8 -5.1 transporter compare
AO356_06575 -1.8 -3.4 outer membrane protein assembly factor BamB compare
AO356_14155 -1.8 -7.1 dethiobiotin synthetase compare
AO356_27205 -1.8 -6.6 hypothetical protein compare
AO356_08895 -1.8 -2.5 GlcNAc-PI de-N-acetylase compare
AO356_08465 -1.7 -3.3 protein hupE compare
AO356_18735 -1.7 -4.9 arginine N-succinyltransferase compare
AO356_20175 -1.6 -2.7 3-oxoacyl-ACP synthase compare
AO356_27230 -1.6 -4.0 hypothetical protein compare
AO356_16850 -1.5 -8.7 serine hydroxymethyltransferase compare
AO356_15420 -1.5 -4.4 hypothetical protein compare
AO356_07370 -1.5 -5.2 nicotinate-nucleotide pyrophosphorylase compare
AO356_05195 -1.5 -8.5 sugar ABC transporter substrate-binding protein compare
AO356_05180 -1.5 -5.1 sugar ABC transporter ATP-binding protein compare
AO356_05185 -1.5 -6.9 sugar ABC transporter permease compare
AO356_12005 -1.5 -8.7 transcriptional regulator compare
AO356_18000 -1.5 -1.6 FmdB family transcriptional regulator compare
AO356_19420 -1.5 -2.0 septum formation inhibitor compare
AO356_19085 -1.4 -7.2 phosphoribosylglycinamide formyltransferase compare
AO356_05190 -1.4 -10.2 sugar ABC transporter permease compare
AO356_13700 -1.4 -5.1 hypothetical protein compare
AO356_18020 -1.4 -3.4 ATP-dependent DNA helicase RuvA compare
AO356_04560 -1.4 -3.1 serine peptidase compare
AO356_00500 -1.4 -4.4 magnesium chelatase compare
AO356_16070 -1.4 -5.8 poly(A) polymerase compare
AO356_12735 -1.3 -2.3 diaminopimelate epimerase compare
AO356_28300 -1.3 -1.6 hypothetical protein compare
AO356_10005 -1.3 -7.2 branched-chain amino acid permease (azaleucine resistance) compare
AO356_20475 -1.3 -2.3 hypothetical protein compare
AO356_07540 -1.3 -2.2 SsrA-binding protein compare
AO356_26210 -1.3 -1.9 histidine kinase compare
AO356_13445 -1.3 -1.4 dihydroorotase compare
AO356_05205 -1.3 -5.6 histidine kinase compare
AO356_06995 -1.3 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_08280 -1.3 -3.9 oxidoreductase compare
AO356_03435 -1.3 -2.9 integration host factor subunit beta compare
AO356_19135 -1.3 -3.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_06385 -1.3 -3.3 recombinase XerD compare
AO356_27250 -1.3 -3.5 hypothetical protein compare
AO356_02315 -1.3 -3.7 DNA topoisomerase I compare
AO356_05210 -1.3 -3.7 chemotaxis protein CheY compare
AO356_22405 -1.3 -2.5 hypothetical protein compare
AO356_02305 -1.2 -1.5 hypothetical protein compare
AO356_10330 -1.2 -8.8 threonine dehydratase compare
AO356_06005 -1.2 -4.0 zinc metallopeptidase RseP compare
AO356_28695 -1.2 -2.3 IclR family transcriptional regulator compare
AO356_03180 -1.2 -3.3 CysB family transcriptional regulator compare
AO356_21410 -1.2 -1.4 SAM-dependent methyltransferase compare
AO356_17070 -1.1 -2.2 cytochrome B compare
AO356_01750 -1.1 -3.2 ATP-dependent Clp protease proteolytic subunit compare
AO356_08235 -1.1 -5.4 histidine kinase compare
AO356_12380 -1.1 -5.9 ATP-dependent DNA helicase RecG compare
AO356_19140 -1.1 -7.2 cobyrinic acid a,c-diamide synthase compare
AO356_18910 -1.1 -6.6 chemotaxis protein compare
AO356_02290 -1.1 -2.3 TetR family transcriptional regulator compare
AO356_11990 -1.1 -7.3 DNA helicase II compare
AO356_25390 -1.1 -2.3 enamine deaminase RidA compare
AO356_08890 -1.1 -5.0 glycosyltransferase compare
AO356_16670 -1.1 -6.6 adenylylsulfate kinase compare
AO356_16665 -1.1 -7.0 sulfate adenylyltransferase compare
AO356_17065 -1.1 -1.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_03725 -1.1 -2.3 histidine kinase compare
AO356_21795 -1.1 -2.3 PBS lyase compare
AO356_07920 -1.0 -3.8 exodeoxyribonuclease V subunit gamma compare
AO356_20335 -1.0 -2.9 hypothetical protein compare
AO356_10075 -1.0 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_02800 -1.0 -2.9 transporter compare
AO356_14540 -1.0 -1.6 biotin--protein ligase compare
AO356_08290 -1.0 -3.2 precorrin-6Y C5,15-methyltransferase compare
AO356_30345 -1.0 -3.8 IclR family transcriptional regulator compare
AO356_12990 -1.0 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
AO356_18370 -1.0 -3.4 NADH:quinone oxidoreductase compare
AO356_07910 -1.0 -1.6 exodeoxyribonuclease V subunit alpha compare
AO356_06690 -1.0 -2.7 queuine tRNA-ribosyltransferase compare
AO356_07915 -1.0 -2.6 exodeoxyribonuclease V subunit beta compare
AO356_08670 -1.0 -1.9 N-acetylmuramoyl-L-alanine amidase compare
AO356_08610 -1.0 -4.8 exoribonuclease R compare
AO356_19165 -1.0 -2.9 adenosylcobinamide kinase compare
AO356_12725 -1.0 -2.7 recombinase XerC compare
AO356_17825 -1.0 -4.2 enoyl-CoA hydratase compare
AO356_28685 -1.0 -2.5 betaine-aldehyde dehydrogenase compare
AO356_27400 -1.0 -2.7 1,2-oxophytodienoate reductase compare
AO356_10000 -0.9 -3.5 hypothetical protein compare
AO356_27245 -0.9 -0.7 hypothetical protein compare
AO356_19050 -0.9 -2.1 cysteine synthase compare
AO356_13695 -0.9 -2.3 hypothetical protein compare
AO356_16080 -0.9 -4.8 ATPase compare
AO356_03800 -0.9 -1.7 histidine kinase compare
AO356_11450 -0.9 -1.3 cytochrome C compare
AO356_08300 -0.9 -3.0 cobalt-precorrin-6X reductase compare
AO356_00530 -0.9 -2.9 precorrin-4 C11-methyltransferase compare
AO356_10585 -0.9 -6.1 hypothetical protein compare
AO356_26475 -0.9 -2.1 lactoylglutathione lyase compare
AO356_19155 -0.9 -5.3 threonine-phosphate decarboxylase compare
AO356_06990 -0.8 -3.3 toluene tolerance protein compare
AO356_08275 -0.8 -2.1 precorrin isomerase compare
AO356_11465 -0.8 -5.2 DNA polymerase I compare
AO356_25440 -0.8 -3.5 histidine kinase compare
AO356_13685 -0.8 -1.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_18480 -0.8 -1.0 translation initiation factor 2 compare
AO356_27240 -0.8 -2.1 hypothetical protein compare
AO356_23325 -0.8 -2.9 short-chain dehydrogenase compare
AO356_07005 -0.8 -1.4 ABC transporter ATP-binding protein compare
AO356_18725 -0.8 -2.6 acetylornithine aminotransferase compare
AO356_18145 -0.8 -4.3 quinolinate synthase A compare
AO356_03070 -0.8 -5.5 histidine kinase compare
AO356_28160 -0.8 -1.9 hypothetical protein compare
AO356_02190 -0.8 -3.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in pH experiments