Experiment set6IT079 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Minimal media pH6

200 most important genes:

  gene name fitness t score description  
AO356_05215 -6.3 -7.5 glucokinase compare
AO356_19425 -6.1 -4.2 lipid A biosynthesis lauroyl acyltransferase compare
AO356_21405 -5.8 -5.6 3-isopropylmalate dehydratase compare
AO356_22200 -5.6 -8.5 sirohydrochlorin ferrochelatase compare
AO356_05205 -5.4 -10.5 histidine kinase compare
AO356_21465 -5.4 -5.3 amidophosphoribosyltransferase compare
AO356_12520 -5.2 -3.5 orotate phosphoribosyltransferase compare
AO356_13405 -5.1 -11.9 methionine biosynthesis protein MetW compare
AO356_20830 -5.1 -5.0 phosphoadenosine phosphosulfate reductase compare
AO356_16955 -5.1 -7.0 disulfide bond formation protein B compare
AO356_08635 -5.1 -11.8 ATP phosphoribosyltransferase regulatory subunit compare
AO356_09815 -5.0 -9.0 imidazoleglycerol-phosphate dehydratase compare
AO356_09810 -5.0 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_05210 -5.0 -7.6 chemotaxis protein CheY compare
AO356_00555 -4.8 -12.9 sulfite reductase compare
AO356_12020 -4.8 -15.6 pyruvate carboxylase subunit A compare
AO356_19795 -4.7 -3.3 glycerol-3-phosphate dehydrogenase compare
AO356_18325 -4.7 -16.0 argininosuccinate synthase compare
AO356_18275 -4.6 -14.2 ornithine carbamoyltransferase compare
AO356_05190 -4.6 -20.3 sugar ABC transporter permease compare
AO356_16175 -4.6 -10.2 acetolactate synthase 3 regulatory subunit compare
AO356_08905 -4.6 -4.4 glycosyl transferase compare
AO356_10915 -4.5 -12.1 tryptophan synthase subunit beta compare
AO356_16170 -4.5 -14.5 acetolactate synthase 3 catalytic subunit compare
AO356_13410 -4.5 -14.6 homoserine O-acetyltransferase compare
AO356_16075 -4.5 -5.3 Fis family transcriptional regulator compare
AO356_08735 -4.5 -13.6 phosphoserine phosphatase compare
AO356_13605 -4.4 -11.1 5,10-methylenetetrahydrofolate reductase compare
AO356_14295 -4.4 -3.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_16870 -4.4 -13.2 benzoate transporter compare
AO356_10910 -4.4 -11.3 tryptophan synthase subunit alpha compare
AO356_09520 -4.4 -7.3 phosphoribosyl-AMP cyclohydrolase compare
AO356_14420 -4.3 -17.5 anthranilate synthase compare
AO356_19090 -4.3 -4.2 phosphoribosylaminoimidazole synthetase compare
AO356_05195 -4.3 -12.7 sugar ABC transporter substrate-binding protein compare
AO356_27215 -4.3 -5.8 hypothetical protein compare
AO356_09800 -4.3 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_14440 -4.3 -6.5 indole-3-glycerol-phosphate synthase compare
AO356_13250 -4.3 -11.3 dihydroxy-acid dehydratase compare
AO356_16180 -4.2 -14.4 ketol-acid reductoisomerase compare
AO356_13085 -4.2 -13.2 N-acetylglutamate synthase compare
AO356_05160 -4.2 -9.0 glucose-6-phosphate dehydrogenase compare
AO356_15815 -4.2 -2.8 gamma-glutamyl kinase compare
AO356_21440 -4.1 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_21415 -4.1 -11.0 3-isopropylmalate dehydrogenase compare
AO356_06550 -4.1 -11.6 2-isopropylmalate synthase compare
AO356_12025 -4.1 -14.2 pyruvate carboxylase subunit B compare
AO356_02175 -4.0 -9.9 transaldolase compare
AO356_06965 -4.0 -11.5 histidinol dehydrogenase compare
AO356_07480 -4.0 -3.9 carbamoyl phosphate synthase large subunit compare
AO356_05180 -4.0 -8.0 sugar ABC transporter ATP-binding protein compare
AO356_09375 -4.0 -19.1 glutamate synthase compare
AO356_12780 -3.9 -7.8 argininosuccinate lyase compare
AO356_10340 -3.9 -15.3 phosphoserine phosphatase compare
AO356_09525 -3.9 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_21470 -3.9 -7.2 O-succinylhomoserine sulfhydrylase compare
AO356_08235 -3.9 -11.8 histidine kinase compare
AO356_18730 -3.8 -12.5 arginine N-succinyltransferase compare
AO356_06970 -3.8 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_21400 -3.8 -4.2 isopropylmalate isomerase compare
AO356_16665 -3.8 -12.5 sulfate adenylyltransferase compare
AO356_22795 -3.8 -5.2 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_00560 -3.8 -3.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_06960 -3.7 -9.3 histidinol-phosphate aminotransferase compare
AO356_27205 -3.6 -10.7 hypothetical protein compare
AO356_14435 -3.6 -8.9 anthranilate phosphoribosyltransferase compare
AO356_01750 -3.5 -4.7 ATP-dependent Clp protease proteolytic subunit compare
AO356_09370 -3.5 -11.3 glutamate synthase compare
AO356_10920 -3.5 -10.3 LysR family transcriptional regulator compare
AO356_12525 -3.5 -10.3 acetylglutamate kinase compare
AO356_14430 -3.4 -10.7 anthranilate synthase compare
AO356_03375 -3.4 -3.2 ExsB family protein compare
AO356_16670 -3.4 -10.9 adenylylsulfate kinase compare
AO356_10300 -3.4 -4.4 3-phosphoglycerate dehydrogenase compare
AO356_09795 -3.3 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO356_05185 -3.3 -7.0 sugar ABC transporter permease compare
AO356_24845 -3.3 -4.6 ATPase compare
AO356_19520 -3.2 -5.5 isochorismatase compare
AO356_06575 -3.1 -4.3 outer membrane protein assembly factor BamB compare
AO356_11315 -3.1 -3.0 shikimate dehydrogenase compare
AO356_12015 -3.1 -10.4 LysR family transcriptional regulator compare
AO356_16050 -3.1 -4.7 glucose-6-phosphate isomerase compare
AO356_27210 -3.0 -8.4 hypothetical protein compare
AO356_17070 -3.0 -4.1 cytochrome B compare
AO356_03180 -3.0 -5.6 CysB family transcriptional regulator compare
AO356_17520 -3.0 -2.8 phosphoribosylformylglycinamidine synthase compare
AO356_16850 -2.9 -11.3 serine hydroxymethyltransferase compare
AO356_27180 -2.9 -4.8 hypothetical protein compare
AO356_00880 -2.9 -2.9 integration host factor subunit alpha compare
AO356_15165 -2.9 -2.6 protein cII compare
AO356_21330 -2.8 -8.2 aromatic amino acid aminotransferase compare
AO356_05225 -2.7 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_01740 -2.7 -5.0 DNA-binding protein compare
AO356_08895 -2.7 -3.6 GlcNAc-PI de-N-acetylase compare
AO356_03495 -2.6 -5.8 phosphoglycolate phosphatase compare
AO356_08890 -2.5 -8.4 glycosyltransferase compare
AO356_03800 -2.5 -2.9 histidine kinase compare
AO356_03435 -2.4 -4.5 integration host factor subunit beta compare
AO356_07915 -2.4 -4.5 exodeoxyribonuclease V subunit beta compare
AO356_27840 -2.4 -8.9 sodium:proton antiporter compare
AO356_17950 -2.4 -10.7 histidine kinase compare
AO356_05055 -2.4 -7.7 permease DsdX compare
AO356_07005 -2.4 -1.8 ABC transporter ATP-binding protein compare
AO356_15420 -2.3 -3.9 hypothetical protein compare
AO356_11585 -2.3 -4.9 lipid A biosynthesis lauroyl acyltransferase compare
AO356_11025 -2.3 -6.6 transcriptional regulator PhoU compare
AO356_01745 -2.2 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_14135 -2.2 -11.7 biotin synthase compare
AO356_20475 -2.2 -2.3 hypothetical protein compare
AO356_18805 -2.2 -1.9 magnesium transporter compare
AO356_06995 -2.2 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_10005 -2.1 -8.7 branched-chain amino acid permease (azaleucine resistance) compare
AO356_20175 -2.1 -3.0 3-oxoacyl-ACP synthase compare
AO356_07105 -2.0 -10.0 hypothetical protein compare
AO356_19050 -1.9 -3.6 cysteine synthase compare
AO356_10000 -1.9 -4.3 hypothetical protein compare
AO356_27250 -1.8 -4.6 hypothetical protein compare
AO356_08880 -1.8 -5.9 glycosyl transferase compare
AO356_30345 -1.8 -5.0 IclR family transcriptional regulator compare
AO356_02190 -1.8 -7.2 hypothetical protein compare
AO356_05060 -1.7 -2.9 gluconokinase compare
AO356_18025 -1.7 -3.3 ATP-dependent DNA helicase RuvB compare
AO356_06690 -1.7 -4.0 queuine tRNA-ribosyltransferase compare
AO356_22825 -1.7 -3.6 transcriptional regulator compare
AO356_06990 -1.6 -3.7 toluene tolerance protein compare
AO356_17890 -1.6 -2.1 H-NS histone compare
AO356_12375 -1.6 -8.2 histidine kinase compare
AO356_20470 -1.6 -2.7 hypothetical protein compare
AO356_16350 -1.6 -3.2 hypothetical protein compare
AO356_10330 -1.6 -10.1 threonine dehydratase compare
AO356_27230 -1.6 -4.2 hypothetical protein compare
AO356_10580 -1.6 -8.5 hypothetical protein compare
AO356_03365 -1.6 -4.1 UDP-N-acetylglucosamine 2-epimerase compare
AO356_16370 -1.6 -8.1 hypothetical protein compare
AO356_04550 -1.5 -4.1 response regulator SirA compare
AO356_12640 -1.5 -2.2 cytochrome C compare
AO356_18775 -1.5 -2.6 aspartate kinase compare
AO356_12900 -1.5 -3.4 exopolyphosphatase compare
AO356_04560 -1.5 -2.9 serine peptidase compare
AO356_14395 -1.5 -10.5 polyamine ABC transporter substrate-binding protein compare
AO356_03355 -1.5 -4.3 hypothetical protein compare
AO356_16320 -1.5 -4.3 hypothetical protein compare
AO356_14790 -1.5 -6.7 MFS transporter compare
AO356_12990 -1.4 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
AO356_03400 -1.4 -5.5 aminotransferase DegT compare
AO356_10075 -1.4 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_10555 -1.4 -10.2 hemolysin secretion protein D compare
AO356_03345 -1.4 -7.5 hypothetical protein compare
AO356_18020 -1.4 -2.9 ATP-dependent DNA helicase RuvA compare
AO356_16080 -1.4 -7.0 ATPase compare
AO356_11990 -1.4 -8.9 DNA helicase II compare
AO356_00355 -1.4 -7.4 chemotaxis protein CheY compare
AO356_13685 -1.4 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_02460 -1.4 -1.9 hypothetical protein compare
AO356_09730 -1.4 -4.4 nitrogen regulation protein NR(I) compare
AO356_08875 -1.4 -2.9 toluene tolerance protein compare
AO356_18910 -1.3 -8.2 chemotaxis protein compare
AO356_17075 -1.3 -2.8 cytochrome C compare
AO356_17985 -1.3 -4.6 cold-shock protein compare
AO356_07390 -1.3 -2.2 polyribonucleotide nucleotidyltransferase compare
AO356_20850 -1.3 -5.2 hypothetical protein compare
AO356_10570 -1.3 -10.8 large adhesive protein compare
AO356_17830 -1.2 -3.5 pyruvate kinase compare
AO356_07920 -1.2 -4.3 exodeoxyribonuclease V subunit gamma compare
AO356_17065 -1.2 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_10185 -1.2 -6.9 glutamate--cysteine ligase compare
AO356_03420 -1.2 -6.0 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_03500 -1.2 -3.8 3-oxoacyl-ACP reductase compare
AO356_02290 -1.2 -1.8 TetR family transcriptional regulator compare
AO356_09540 -1.2 -1.5 twin-arginine protein translocation system subunit TatC compare
AO356_10560 -1.2 -7.4 ABC transporter compare
AO356_15920 -1.2 -2.7 DNA transporter compare
AO356_00960 -1.2 -3.7 ABC transporter permease compare
AO356_02285 -1.2 -5.5 beta-hexosaminidase compare
AO356_16450 -1.2 -3.2 GTP-binding protein compare
AO356_07385 -1.2 -1.3 tRNA-Thr compare
AO356_11610 -1.1 -1.9 glycerol acyltransferase compare
AO356_03415 -1.1 -6.1 oxidoreductase compare
AO356_05555 -1.1 -8.5 AmpG family muropeptide MFS transporter compare
AO356_19080 -1.1 -7.1 dehydrogenase compare
AO356_19045 -1.1 -7.7 chemotaxis protein CheY compare
AO356_20300 -1.1 -5.4 transcriptional regulator compare
AO356_21460 -1.1 -2.2 colicin V production CvpA compare
AO356_15325 -1.1 -2.1 hypothetical protein compare
AO356_02465 -1.1 -1.9 carbonate dehydratase compare
AO356_08870 -1.1 -5.3 polymerase compare
AO356_12380 -1.1 -5.1 ATP-dependent DNA helicase RecG compare
AO356_03430 -1.1 -2.3 hypothetical protein compare
AO356_03725 -1.1 -2.7 histidine kinase compare
AO356_10145 -1.1 -2.2 molecular chaperone Hsp33 compare
AO356_02310 -1.1 -2.4 PasA protein compare
AO356_14355 -1.1 -6.5 aminoglycoside phosphotransferase compare
AO356_02335 -1.1 -3.5 hypothetical protein compare
AO356_13920 -1.1 -3.2 electron transfer flavoprotein subunit beta compare
AO356_24520 -1.1 -2.9 ArsR family transcriptional regulator compare
AO356_29990 -1.1 -1.4 cupin compare
AO356_19335 -1.0 -6.7 peptidase S41 compare
AO356_08640 -1.0 -3.2 membrane protease HflC compare
AO356_28255 -1.0 -2.1 class III aminotransferase compare
AO356_13485 -1.0 -2.2 chemotaxis protein CheY compare


Specific Phenotypes

For 2 genes in this experiment