Experiment set6IT077 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB 37C

200 most important genes:

  gene name fitness t score description  
AO356_04560 -4.0 -2.7 serine peptidase compare
AO356_07495 -3.9 -5.3 molecular chaperone DnaJ compare
AO356_22795 -3.7 -5.0 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_06575 -3.3 -4.4 outer membrane protein assembly factor BamB compare
AO356_08905 -3.2 -4.4 glycosyl transferase compare
AO356_17890 -3.2 -3.4 H-NS histone compare
AO356_08895 -3.2 -3.1 GlcNAc-PI de-N-acetylase compare
AO356_07910 -2.9 -3.3 exodeoxyribonuclease V subunit alpha compare
AO356_24245 -2.7 -5.1 siderophore-iron reductase FhuF compare
AO356_20175 -2.5 -3.5 3-oxoacyl-ACP synthase compare
AO356_06690 -2.2 -4.6 queuine tRNA-ribosyltransferase compare
AO356_17070 -1.9 -3.5 cytochrome B compare
AO356_09540 -1.8 -2.1 twin-arginine protein translocation system subunit TatC compare
AO356_16185 -1.8 -5.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_12515 -1.8 -4.3 exodeoxyribonuclease III compare
AO356_10185 -1.7 -7.6 glutamate--cysteine ligase compare
AO356_11465 -1.7 -8.1 DNA polymerase I compare
AO356_19080 -1.6 -9.4 dehydrogenase compare
AO356_18805 -1.6 -1.4 magnesium transporter compare
AO356_11420 -1.6 -6.8 histidine kinase compare
AO356_15325 -1.5 -2.4 hypothetical protein compare
AO356_01745 -1.5 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_05670 -1.5 -3.2 recombinase RecA compare
AO356_08890 -1.5 -6.5 glycosyltransferase compare
AO356_16070 -1.5 -5.5 poly(A) polymerase compare
AO356_01750 -1.5 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO356_08235 -1.5 -7.4 histidine kinase compare
AO356_03375 -1.4 -1.8 ExsB family protein compare
AO356_12640 -1.4 -2.4 cytochrome C compare
AO356_10170 -1.4 -2.6 chemotaxis protein CheY compare
AO356_08875 -1.4 -2.1 toluene tolerance protein compare
AO356_07915 -1.3 -3.2 exodeoxyribonuclease V subunit beta compare
AO356_07005 -1.3 -1.7 ABC transporter ATP-binding protein compare
AO356_13275 -1.3 -1.4 multidrug transporter compare
AO356_03010 -1.3 -2.3 glutaredoxin compare
AO356_12735 -1.3 -2.2 diaminopimelate epimerase compare
AO356_14820 -1.3 -2.9 Isochorismatase compare
AO356_01050 -1.3 -8.5 hypothetical protein compare
AO356_17985 -1.3 -4.9 cold-shock protein compare
AO356_02290 -1.2 -2.3 TetR family transcriptional regulator compare
AO356_07540 -1.2 -1.7 SsrA-binding protein compare
AO356_25830 -1.2 -2.4 DNA repair protein compare
AO356_19565 -1.2 -2.2 hypothetical protein compare
AO356_08640 -1.2 -3.7 membrane protease HflC compare
AO356_09810 -1.2 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_06990 -1.1 -4.1 toluene tolerance protein compare
AO356_27550 -1.1 -3.6 3-oxoacyl-ACP synthase compare
AO356_02265 -1.1 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_05735 -1.1 -1.6 hypothetical protein compare
AO356_17035 -1.1 -4.8 ATPase compare
AO356_20800 -1.1 -1.6 hypothetical protein compare
AO356_15420 -1.1 -3.1 hypothetical protein compare
AO356_08660 -1.1 -5.4 tRNA dimethylallyltransferase compare
AO356_19050 -1.1 -2.1 cysteine synthase compare
AO356_30265 -1.0 -2.6 cupin compare
AO356_14130 -1.0 -1.4 amidophosphoribosyltransferase compare
AO356_27180 -1.0 -3.3 hypothetical protein compare
AO356_09780 -1.0 -4.1 peptidase S41 compare
AO356_18025 -1.0 -2.4 ATP-dependent DNA helicase RuvB compare
AO356_26755 -1.0 -2.8 DNA-directed RNA polymerase subunit alpha compare
AO356_02325 -1.0 -1.6 3-ketoacyl-CoA thiolase compare
AO356_27770 -1.0 -2.4 hypothetical protein compare
AO356_07400 -1.0 -4.0 pseudouridine synthase compare
AO356_09795 -0.9 -1.4 imidazole glycerol phosphate synthase subunit HisF compare
AO356_02250 -0.9 -4.9 pyridine nucleotide-disulfide oxidoreductase compare
AO356_19420 -0.9 -1.6 septum formation inhibitor compare
AO356_17065 -0.9 -1.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_04055 -0.9 -1.4 hypothetical protein compare
AO356_19090 -0.9 -2.1 phosphoribosylaminoimidazole synthetase compare
AO356_11680 -0.9 -2.1 chromosome partitioning protein ParB compare
AO356_17950 -0.9 -4.5 histidine kinase compare
AO356_16075 -0.9 -2.6 Fis family transcriptional regulator compare
AO356_24555 -0.9 -1.7 hypothetical protein compare
AO356_03355 -0.9 -2.6 hypothetical protein compare
AO356_16955 -0.9 -4.4 disulfide bond formation protein B compare
AO356_18740 -0.9 -2.7 succinylglutamate-semialdehyde dehydrogenase compare
AO356_29355 -0.9 -1.5 hypothetical protein compare
AO356_00810 -0.9 -2.0 hypothetical protein compare
AO356_27245 -0.9 -1.4 hypothetical protein compare
AO356_12605 -0.9 -5.4 FAD-dependent oxidoreductase compare
AO356_09080 -0.9 -1.4 thioredoxin compare
AO356_01045 -0.8 -2.8 hypothetical protein compare
AO356_06995 -0.8 -3.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_06965 -0.8 -4.1 histidinol dehydrogenase compare
AO356_25420 -0.8 -2.1 chemotaxis protein CheY compare
AO356_28170 -0.8 -2.2 hypothetical protein compare
AO356_11515 -0.8 -3.6 metal ABC transporter permease compare
AO356_20475 -0.8 -1.8 hypothetical protein compare
AO356_03210 -0.8 -1.9 hypothetical protein compare
AO356_24450 -0.8 -2.8 microcin ABC transporter ATP-binding protein compare
AO356_24845 -0.8 -2.1 ATPase compare
AO356_08610 -0.8 -3.8 exoribonuclease R compare
AO356_09800 -0.8 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_01915 -0.8 -1.6 hypothetical protein compare
AO356_22140 -0.8 -3.0 cold-shock protein compare
AO356_18745 -0.8 -4.2 succinylarginine dihydrolase compare
AO356_14870 -0.8 -3.2 dTDP-4-dehydrorhamnose reductase compare
AO356_28435 -0.8 -1.8 SAM-dependent methyltransferase compare
AO356_20445 -0.8 -3.2 hypothetical protein compare
AO356_03500 -0.8 -2.5 3-oxoacyl-ACP reductase compare
AO356_13685 -0.8 -1.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_16450 -0.8 -1.9 GTP-binding protein compare
AO356_09460 -0.8 -2.6 ATP-dependent protease ATP-binding subunit HslU compare
AO356_21575 -0.8 -2.7 GTP pyrophosphokinase compare
AO356_22660 -0.8 -3.3 chemotaxis protein CheW compare
AO356_09455 -0.8 -1.2 ATP-dependent protease subunit HslV compare
AO356_09765 -0.8 -1.8 sulfurtransferase compare
AO356_28040 -0.7 -2.5 quinoprotein dehydrogenase-associated SoxYZ-like carrier compare
AO356_18000 -0.7 -1.0 FmdB family transcriptional regulator compare
AO356_02190 -0.7 -3.6 hypothetical protein compare
AO356_06050 -0.7 -5.2 protein-PII uridylyltransferase compare
AO356_03180 -0.7 -2.9 CysB family transcriptional regulator compare
AO356_21590 -0.7 -2.5 hypothetical protein compare
AO356_02205 -0.7 -2.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_03620 -0.7 -2.4 cytochrome C compare
AO356_09500 -0.7 -2.1 polyhydroxyalkanoic acid system protein compare
AO356_25750 -0.7 -1.7 GntR family transcriptional regulator compare
AO356_21275 -0.7 -0.7 peptidase compare
AO356_23400 -0.7 -1.7 phosphonate ABC transporter compare
AO356_03800 -0.7 -1.6 histidine kinase compare
AO356_26630 -0.7 -2.1 XshC-Cox1 family protein compare
AO356_18755 -0.7 -3.8 succinylglutamate desuccinylase compare
AO356_02860 -0.7 -1.7 histidine kinase compare
AO356_24550 -0.7 -1.5 hypothetical protein compare
AO356_17485 -0.7 -2.9 elongation factor 4 compare
AO356_11675 -0.7 -3.9 chromosome partitioning protein compare
AO356_03350 -0.7 -3.2 glycosyl transferase compare
AO356_24290 -0.7 -4.4 energy transducer TonB compare
AO356_26040 -0.6 -1.1 hypothetical protein compare
AO356_08880 -0.6 -3.5 glycosyl transferase compare
AO356_12795 -0.6 -3.9 heme biosynthesis operon protein HemX compare
AO356_03405 -0.6 -2.0 serine acetyltransferase compare
AO356_04275 -0.6 -1.1 3-oxoacyl-ACP synthase compare
AO356_30415 -0.6 -1.3 pyrroloquinoline quinone biosynthesis protein PqqC compare
AO356_18020 -0.6 -1.5 ATP-dependent DNA helicase RuvA compare
AO356_21310 -0.6 -1.1 filamentous hemagglutinin compare
AO356_10935 -0.6 -1.3 hypothetical protein compare
AO356_15935 -0.6 -4.9 ATP-dependent chaperone ClpB compare
AO356_22185 -0.6 -3.3 recombination factor protein RarA compare
AO356_18070 -0.6 -2.1 7-cyano-7-deazaguanine synthase compare
AO356_08585 -0.6 -1.7 50S ribosomal protein L9 compare
AO356_18395 -0.6 -1.8 exclusion suppressor FxsA compare
AO356_30040 -0.6 -1.7 formyltetrahydrofolate deformylase compare
AO356_26655 -0.6 -0.9 (2Fe-2S)-binding protein compare
AO356_13145 -0.6 -4.1 glutamine synthetase compare
AO356_05895 -0.6 -2.9 protein-L-isoaspartate O-methyltransferase compare
AO356_06695 -0.6 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_27760 -0.6 -1.5 LysR family transcriptional regulator compare
AO356_18845 -0.6 -1.8 hypothetical protein compare
AO356_26395 -0.6 -1.2 hypothetical protein compare
AO356_12500 -0.6 -4.0 ribonuclease PH compare
AO356_25535 -0.6 -1.4 hypothetical protein compare
AO356_06415 -0.6 -1.6 cytochrome C assembly protein compare
AO356_26205 -0.6 -1.4 nitrite reductase compare
AO356_29990 -0.6 -1.4 cupin compare
AO356_29100 -0.6 -1.6 epimerase compare
AO356_10910 -0.6 -3.0 tryptophan synthase subunit alpha compare
AO356_01970 -0.6 -3.1 phage capsid protein compare
AO356_03400 -0.6 -2.5 aminotransferase DegT compare
AO356_26095 -0.6 -1.6 Rieske (2Fe-2S) protein compare
AO356_03345 -0.6 -3.3 hypothetical protein compare
AO356_16260 -0.6 -3.1 ribosomal-protein-alanine acetyltransferase compare
AO356_11340 -0.6 -0.8 NADH-flavin reductase compare
AO356_26650 -0.6 -2.1 4-chlorobenzoate--CoA ligase compare
AO356_25455 -0.6 -1.2 transcriptional regulator compare
AO356_28020 -0.6 -2.6 ethanol oxidation regulatory protein ercA (from data) compare
AO356_05995 -0.6 -1.2 hypothetical protein compare
AO356_18780 -0.6 -0.7 carbon storage regulator compare
AO356_03360 -0.6 -1.4 hypothetical protein compare
AO356_24990 -0.6 -1.8 4-oxalocrotonate tautomerase compare
AO356_02465 -0.6 -1.5 carbonate dehydratase compare
AO356_09730 -0.6 -2.7 nitrogen regulation protein NR(I) compare
AO356_17075 -0.5 -1.2 cytochrome C compare
AO356_02360 -0.5 -1.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO356_12715 -0.5 -1.7 hypothetical protein compare
AO356_25380 -0.5 -1.8 alpha/beta hydrolase compare
AO356_12385 -0.5 -3.4 LysR family transcriptional regulator compare
AO356_18160 -0.5 -2.1 glycine cleavage system protein T compare
AO356_22710 -0.5 -1.9 ArsC family transcriptional regulator compare
AO356_04555 -0.5 -3.3 peptidase M48 compare
AO356_21320 -0.5 -0.8 tRNA-Asn compare
AO356_02995 -0.5 -2.4 hypothetical protein compare
AO356_24620 -0.5 -1.4 glutathione S-transferase compare
AO356_10075 -0.5 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_01875 -0.5 -0.8 Cro/Cl family transcriptional regulator compare
AO356_11315 -0.5 -0.8 shikimate dehydrogenase compare
AO356_19795 -0.5 -1.9 glycerol-3-phosphate dehydrogenase compare
AO356_20845 -0.5 -3.1 alpha-L-glutamate ligase compare
AO356_18730 -0.5 -3.2 arginine N-succinyltransferase compare
AO356_25665 -0.5 -0.9 3-beta hydroxysteroid dehydrogenase compare
AO356_08530 -0.5 -1.9 azurin compare
AO356_24745 -0.5 -1.4 iron dicitrate transport regulator FecR compare
AO356_27280 -0.5 -1.1 XRE family transcriptional regulator compare
AO356_21740 -0.5 -2.1 cytochrome C compare
AO356_29270 -0.5 -1.5 ABC transporter permease compare
AO356_12140 -0.5 -1.4 type VI secretion protein compare
AO356_01980 -0.5 -2.4 terminase compare
AO356_02800 -0.5 -1.5 transporter compare
AO356_00995 -0.5 -2.3 carbon storage regulator CsrA compare
AO356_07920 -0.5 -2.2 exodeoxyribonuclease V subunit gamma compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in temperature experiments