Experiment set6IT077 for Rhodospirillum rubrum S1H

Compare to:

Sodium acetate; Light intensity 18 uM

200 most important genes:

  gene name fitness t score description  
Rru_A0212 -2.7 -1.2 hypothetical protein (NCBI) compare
Rru_A1168 -1.6 -1.4 Hydrogenase expression/synthesis, HypA (NCBI) compare
Rru_A2055 -1.5 -2.1 Peptidase S49 (NCBI) compare
Rru_A3623 -1.4 -1.0 hypothetical protein (NCBI) compare
Rru_A3362 -1.3 -3.5 Uroporphyrin-III C-methyltransferase-like (NCBI) compare
Rru_A3240 -1.2 -1.6 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A2445 -1.2 -3.1 Protein of unknown function DUF140 (NCBI) compare
Rru_A2773 -1.2 -2.1 hypothetical protein (NCBI) compare
Rru_A0916 -1.2 -2.1 pyruvate-formate lyase-activating enzyme (NCBI) compare
Rru_A1147 -1.2 -3.3 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A0181 -1.2 -2.2 hypothetical protein (NCBI) compare
Rru_A1950 -1.1 -0.7 Transcriptional regulator, ModE family (NCBI) compare
Rru_A3528 -1.1 -0.7 hypothetical protein (NCBI) compare
Rru_A1321 -1.0 -1.6 Biotin--acetyl-CoA-carboxylase ligase (NCBI) compare
Rru_A2260 -1.0 -1.3 hypothetical protein (NCBI) compare
Rru_A2907 -1.0 -0.4 Anti-Sigma-factor antagonist (STAS) domain protein (NCBI) compare
Rru_A0525 -1.0 -4.1 Two component Transcriptional regulator, Winged helix family (NCBI) compare
Rru_A0128 -1.0 -1.6 Na+/H+ antiporter NhaA (NCBI) compare
Rru_A2391 -0.9 -2.9 hypothetical protein (NCBI) compare
Rru_A3186 -0.9 -2.3 hypothetical protein (NCBI) compare
Rru_A1319 -0.9 -0.6 Triphosphoribosyl-dephospho-CoA synthase (NCBI) compare
Rru_A3451 -0.9 -1.1 hypothetical protein (NCBI) compare
Rru_A1785 -0.9 -3.3 membrane protein-like (NCBI) compare
Rru_A2383 -0.9 -2.2 ABC transporter component (NCBI) compare
Rru_A2861 -0.8 -2.0 hypothetical protein (NCBI) compare
Rru_A3468 -0.8 -1.7 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A1464 -0.8 -2.2 HPr kinase (NCBI) compare
Rru_A3634 -0.8 -1.2 Protein of unknown function UPF0001 (NCBI) compare
Rru_A3119 -0.8 -3.4 ATPases involved in chromosome partitioning-like (NCBI) compare
Rru_A0477 -0.8 -1.3 hypothetical protein (NCBI) compare
Rru_A0562 -0.8 -1.0 Peptidase S1 and S6, chymotrypsin/Hap (NCBI) compare
Rru_A1393 -0.8 -1.6 Nitrogenase (NCBI) compare
Rru_A2346 -0.8 -0.9 hypothetical protein (NCBI) compare
Rru_A0318 -0.8 -1.7 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) compare
Rru_A3424 -0.8 -1.3 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A1867 -0.8 -1.0 Protein of unknown function DUF583 (NCBI) compare
Rru_A3462 -0.8 -3.7 Cold-shock DNA-binding domain protein (NCBI) compare
Rru_A2331 -0.8 -4.3 hypothetical protein (NCBI) compare
Rru_A0527 -0.7 -1.2 hypothetical protein (NCBI) compare
Rru_A0976 -0.7 -2.2 Transcriptional modulator of MazE/toxin, MazF (NCBI) compare
Rru_A0357 -0.7 -1.2 hypothetical protein (NCBI) compare
Rru_A2303 -0.7 -0.6 Deoxyribose-phosphate aldolase (NCBI) compare
Rru_A1922 -0.7 -3.3 DSBA oxidoreductase (NCBI) compare
Rru_A0213 -0.7 -1.0 hypothetical protein (NCBI) compare
Rru_A3633 -0.7 -0.9 Thiamine monophosphate synthase (NCBI) compare
Rru_A3297 -0.7 -2.9 hypothetical protein (NCBI) compare
Rru_A0335 -0.7 -2.5 YbaK/prolyl-tRNA synthetase associated region (NCBI) compare
Rru_A1192 -0.7 -2.5 Ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI) compare
Rru_AR0042 -0.7 -2.4 5S ribosomal RNA (NCBI) compare
Rru_B0038 -0.7 -0.5 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI) compare
Rru_A0821 -0.7 -2.8 hypothetical protein (NCBI) compare
Rru_A2918 -0.7 -2.1 hypothetical protein (NCBI) compare
Rru_A0151 -0.7 -1.0 hypothetical protein (NCBI) compare
Rru_A1064 -0.7 -1.0 Plasmid maintenance system killer (NCBI) compare
Rru_A0421 -0.7 -1.7 hypothetical protein (NCBI) compare
Rru_A1610 -0.7 -2.7 hypothetical protein (NCBI) compare
Rru_A1244 -0.6 -2.7 hypothetical protein (NCBI) compare
Rru_A0083 -0.6 -2.5 nuclease, SNase-like (NCBI) compare
Rru_A2813 -0.6 -1.7 Molybdopterin cofactor biosynthesis MoaC region (NCBI) compare
Rru_A0929 -0.6 -2.5 hypothetical protein (NCBI) compare
Rru_A3537 -0.6 -0.9 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A2392 -0.6 -2.2 hypothetical protein (NCBI) compare
Rru_A2048 -0.6 -3.6 ABC transporter component (NCBI) compare
Rru_A1618 -0.6 -1.2 hypothetical protein (NCBI) compare
Rru_A3289 -0.6 -2.3 Diacylglycerol kinase, catalytic region (NCBI) compare
Rru_A0700 -0.6 -0.5 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A2501 -0.6 -0.9 conserved hypothetical cytosolic protein (NCBI) compare
Rru_A1688 -0.6 -1.5 hypothetical protein (NCBI) compare
Rru_A3183 -0.6 -2.3 diheme cytochrome c (NCBI) compare
Rru_A1518 -0.6 -0.9 hypothetical protein (NCBI) compare
Rru_A1937 -0.6 -0.8 hypothetical protein (NCBI) compare
Rru_A1814 -0.6 -0.9 Carbon monoxide dehydrogenase subunit G (NCBI) compare
Rru_A0422 -0.6 -1.8 hypothetical protein (NCBI) compare
Rru_A0883 -0.6 -1.2 Sigma-24 (FecI) (NCBI) compare
Rru_A1112 -0.6 -0.2 hypothetical protein (NCBI) compare
Rru_A2389 -0.6 -2.7 ABC transporter component (NCBI) compare
Rru_A3342 -0.6 -2.6 Dihydrodipicolinate synthase subfamily (NCBI) compare
Rru_A1516 -0.6 -2.0 Transposase and inactivated derivatives-like (NCBI) compare
Rru_A3060 -0.6 -1.8 hypothetical protein (NCBI) compare
Rru_A1933 -0.5 -0.7 Uroporphyrin-III C-methyltransferase (NCBI) compare
Rru_A3550 -0.5 -1.0 Cobyric acid synthase CobQ (NCBI) compare
Rru_A2871 -0.5 -2.1 Peptidase M20D, amidohydrolase (NCBI) compare
Rru_A1248 -0.5 -1.9 hypothetical protein (NCBI) compare
Rru_A0287 -0.5 -1.1 hypothetical protein (NCBI) compare
Rru_A0986 -0.5 -1.3 hypothetical protein (NCBI) compare
Rru_A1788 -0.5 -1.2 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A2500 -0.5 -1.1 Rhodanese-like (NCBI) compare
Rru_A1055 -0.5 -1.9 Protein of unknown function DUF1013 (NCBI) compare
Rru_A0850 -0.5 -1.6 hypothetical protein (NCBI) compare
Rru_A3223 -0.5 -1.8 ABC transporter component (NCBI) compare
Rru_A2036 -0.5 -2.6 hypothetical protein (NCBI) compare
Rru_A3399 -0.5 -1.3 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A1810 -0.5 -2.6 hypothetical protein (NCBI) compare
Rru_A0622 -0.5 -2.4 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A3020 -0.5 -1.2 hypothetical protein (NCBI) compare
Rru_A0717 -0.5 -1.5 phage repressor (NCBI) compare
Rru_A0173 -0.5 -1.9 hypothetical protein (NCBI) compare
Rru_A2310 -0.5 -1.0 cytochrome c family protein (NCBI) compare
Rru_A0329 -0.5 -1.4 hypothetical protein (NCBI) compare
Rru_A3304 -0.5 -1.9 ABC transporter component (NCBI) compare
Rru_A2762 -0.5 -1.9 hypothetical protein (NCBI) compare
Rru_A1720 -0.5 -1.3 Carboxymuconolactone decarboxylase (NCBI) compare
Rru_A1735 -0.5 -0.5 hypothetical protein (NCBI) compare
Rru_A1310 -0.5 -1.8 Acetyl-CoA C-acyltransferase (NCBI) compare
Rru_A0697 -0.5 -1.7 Multi antimicrobial extrusion protein MatE (NCBI) compare
Rru_A1173 -0.5 -2.2 TPR repeat (NCBI) compare
Rru_A3196 -0.5 -1.7 Plasmid stabilization system (NCBI) compare
Rru_A3752 -0.5 -1.0 Protein of unknown function DUF302 (NCBI) compare
Rru_A3649 -0.5 -1.9 2',5' RNA ligase (NCBI) compare
Rru_A3025 -0.5 -2.5 hypothetical protein (NCBI) compare
Rru_A0490 -0.5 -1.4 transport system permease protein (NCBI) compare
Rru_A2532 flgE -0.5 -2.9 flagellar hook protein FlgE (RefSeq) compare
Rru_A1001 -0.5 -1.7 ABC transporter component (NCBI) compare
Rru_A1515 -0.5 -2.6 Transposase, IS4 (NCBI) compare
Rru_A3033 -0.5 -1.1 hypothetical protein (NCBI) compare
Rru_A3591 -0.5 -1.6 hypothetical protein (NCBI) compare
Rru_A3369 -0.5 -0.4 hypothetical protein (NCBI) compare
Rru_A1962 -0.5 -1.6 hypothetical protein (NCBI) compare
Rru_A1909 -0.5 -2.4 hypothetical protein (NCBI) compare
Rru_A3172 -0.5 -1.1 Lysine exporter protein (LYSE/YGGA) (NCBI) compare
Rru_A3316 -0.5 -3.5 Phage integrase (NCBI) compare
Rru_A2095 -0.5 -2.0 Secretion protein HlyD (NCBI) compare
Rru_A1407 -0.5 -1.7 CheD, stimulates methylation of MCP proteins (NCBI) compare
Rru_A2259 -0.5 -0.8 hypothetical protein (NCBI) compare
Rru_A2082 -0.5 -2.4 Hemerythrin HHE cation binding region (NCBI) compare
Rru_A0220 -0.5 -1.1 hypothetical protein (NCBI) compare
Rru_A0760 -0.5 -1.6 hypothetical protein (NCBI) compare
Rru_A3662 -0.5 -2.0 hypothetical protein (NCBI) compare
Rru_A0379 -0.5 -3.2 Flavodoxin, long chain (NCBI) compare
Rru_A3360 -0.5 -2.9 Electron transport protein SCO1/SenC (NCBI) compare
Rru_A2424 -0.5 -1.2 Gamma-glutamyltranspeptidase (NCBI) compare
Rru_A1983 -0.5 -2.1 hypothetical protein (NCBI) compare
Rru_A1843 -0.5 -2.0 OmpA/MotB (NCBI) compare
Rru_A1194 -0.5 -1.4 Protein of unknown function DUF134 (NCBI) compare
Rru_A1834 -0.5 -2.1 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A1327 -0.5 -0.7 hypothetical protein (NCBI) compare
Rru_A3021 -0.5 -1.7 hypothetical protein (NCBI) compare
Rru_A1039 -0.5 -1.1 hypothetical protein (NCBI) compare
Rru_A1471 -0.5 -1.1 Butyrate-acetoacetate CoA-transferase (NCBI) compare
Rru_A1334 -0.5 -1.4 Ribose 5-phosphate isomerase B (NCBI) compare
Rru_A1352 -0.4 -0.4 hypothetical protein (NCBI) compare
Rru_A0323 -0.4 -1.9 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) compare
Rru_A1758 -0.4 -1.0 hypothetical protein (NCBI) compare
Rru_A0809 -0.4 -2.2 hypothetical protein (NCBI) compare
Rru_A0969 -0.4 -1.8 VWA containing CoxE-like (NCBI) compare
Rru_A1473 -0.4 -0.8 hypothetical protein (NCBI) compare
Rru_A1250 -0.4 -2.5 Beta-lactamase (NCBI) compare
Rru_A3441 -0.4 -1.4 Transcriptional Regulator, PadR-like family (NCBI) compare
Rru_A1898 -0.4 -0.3 SOS-response transcriptional repressor, LexA (NCBI) compare
Rru_A3142 -0.4 -1.5 Type III effector Hrp-dependent outers (NCBI) compare
Rru_A2760 -0.4 -0.4 hypothetical protein (NCBI) compare
Rru_A3777 -0.4 -2.7 hypothetical protein (NCBI) compare
Rru_A0401 -0.4 -0.4 hypothetical protein (NCBI) compare
Rru_A0975 -0.4 -0.9 Prevent-host-death protein (NCBI) compare
Rru_A0832 -0.4 -1.7 Protein of unknown function DUF83 (NCBI) compare
Rru_A0227 -0.4 -0.7 hypothetical protein (NCBI) compare
Rru_A2574 -0.4 -0.4 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A0541 -0.4 -2.3 MotA/TolQ/ExbB proton channel (NCBI) compare
Rru_A3305 -0.4 -0.8 ABC transporter component (NCBI) compare
Rru_A3693 -0.4 -1.0 Protein of unknown function UPF0011 (NCBI) compare
Rru_A0576 -0.4 -1.1 chemotaxis sensory transducer (NCBI) compare
Rru_A2074 -0.4 -2.4 Thiosulphate-binding protein (NCBI) compare
Rru_A2836 -0.4 -1.3 hypothetical protein (NCBI) compare
Rru_A3171 -0.4 -2.0 hypothetical protein (NCBI) compare
Rru_A2817 -0.4 -0.9 Phasin (NCBI) compare
Rru_A0328 -0.4 -1.9 Lysine exporter protein (LYSE/YGGA) (NCBI) compare
Rru_A0542 -0.4 -1.2 Surface presentation of antigens (SPOA) protein (NCBI) compare
Rru_A3260 -0.4 -2.4 hypothetical protein (NCBI) compare
Rru_A2482 -0.4 -1.3 transcription regulator containing helix turn helix domain (NCBI) compare
Rru_A1149 -0.4 -1.8 Protein of unknown function DUF324 (NCBI) compare
Rru_A1505 -0.4 -1.6 Allophanate hydrolase subunit 2 (NCBI) compare
Rru_A2828 -0.4 -1.4 hypothetical protein (NCBI) compare
Rru_A2808 -0.4 -1.1 periplasmic protein-probably involved in high-affinity Fe2+ transport (NCBI) compare
Rru_A3648 -0.4 -1.7 Aminoglycoside phosphotransferase (NCBI) compare
Rru_A3307 -0.4 -2.7 inner-membrane translocator (NCBI) compare
Rru_A3398 -0.4 -1.1 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A0706 -0.4 -2.4 RarD protein (NCBI) compare
Rru_B0010 -0.4 -2.3 Resolvase (NCBI) compare
Rru_A2231 -0.4 -2.2 Glycosyl transferase, family 25 (NCBI) compare
Rru_A1894 -0.4 -1.1 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A1302 -0.4 -2.0 Formiminoglutamate deiminase (NCBI) compare
Rru_A1293 -0.4 -2.1 chemotaxis sensory transducer (NCBI) compare
Rru_A3697 -0.4 -1.5 Fumarylacetoacetate (FAA) hydrolase (NCBI) compare
Rru_A1920 -0.4 -1.5 ABC transporter component (NCBI) compare
Rru_A1351 -0.4 -2.2 hypothetical protein (NCBI) compare
Rru_A3225 -0.4 -0.9 hypothetical protein (NCBI) compare
Rru_A0722 -0.4 -1.1 Sigma-24 (FecI) (NCBI) compare
Rru_A2246 -0.4 -2.5 Glucose-1-phosphate adenylyltransferase (NCBI) compare
Rru_A2181 -0.4 -2.8 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A0070 -0.4 -2.2 Protein of unknown function DUF6, transmembrane (NCBI) compare
Rru_A3263 -0.4 -1.7 Prephenate dehydrogenase (NCBI) compare
Rru_A2614 -0.4 -0.9 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) compare
Rru_A3594 -0.4 -0.6 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A0300 -0.4 -1.8 Aminotransferase, class IV (NCBI) compare
Rru_A1974 -0.4 -2.4 hypothetical protein (NCBI) compare
Rru_A1454 -0.4 -0.5 Phage Tail Collar (NCBI) compare
Rru_A1329 -0.4 -1.7 transporter (NCBI) compare
Rru_A2325 -0.4 -1.5 MCP methyltransferase, CheR-type (NCBI) compare
Rru_A2388 -0.4 -1.8 ABC-3 transporter component (NCBI) compare
Rru_A1517 -0.4 -1.1 transposase of ISBst12-like element (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in light experiments

For light Sodium acetate across organisms