Experiment set6IT072 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2473 -4.3 -2.2 Major outer membrane lipoprotein I compare
Pf6N2E2_3658 -3.9 -4.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3611 -3.8 -2.6 HflC protein compare
Pf6N2E2_3659 -3.6 -5.4 Protein fixF compare
Pf6N2E2_3782 -3.5 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4743 -3.3 -1.6 hypothetical protein compare
Pf6N2E2_2574 -3.2 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_3198 -3.1 -2.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2506 -2.9 -12.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3661 -2.8 -2.8 hypothetical protein compare
Pf6N2E2_5242 -2.8 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2320 -2.7 -3.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4187 -2.7 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4075 -2.6 -5.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3839 -2.5 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5316 -2.4 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2189 -2.4 -5.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2126 -2.4 -5.9 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3303 -2.3 -4.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_1056 -2.3 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_6064 -2.3 -5.7 2-methylaconitate isomerase compare
Pf6N2E2_5150 -2.3 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5006 -2.3 -7.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5178 -2.2 -2.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3487 -2.2 -8.8 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5261 -2.2 -1.5 FIG00956983: hypothetical protein compare
Pf6N2E2_5339 -2.2 -6.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4071 -2.2 -4.6 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2317 -2.2 -4.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2219 -2.1 -2.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3252 -2.1 -6.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4579 -2.0 -2.4 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4611 -2.0 -3.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5338 -2.0 -7.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4159 -2.0 -4.0 Cytochrome c4 compare
Pf6N2E2_2310 -2.0 -8.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3271 -2.0 -2.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5406 -2.0 -2.6 FIG00958224: hypothetical protein compare
Pf6N2E2_5508 -2.0 -2.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2753 -1.9 -2.6 HtrA protease/chaperone protein compare
Pf6N2E2_2264 -1.9 -3.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2646 -1.9 -2.1 FIG00953416: hypothetical protein compare
Pf6N2E2_5727 -1.9 -4.3 FIG00955360: hypothetical protein compare
Pf6N2E2_3062 -1.9 -3.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2549 -1.9 -1.6 hypothetical protein compare
Pf6N2E2_2510 -1.9 -4.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5430 -1.9 -5.8 Transglycosylase, Slt family compare
Pf6N2E2_3786 -1.8 -3.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_2127 -1.8 -3.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3477 -1.7 -2.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3264 -1.7 -2.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2218 -1.7 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4416 -1.7 -2.3 Tyrosine recombinase XerC compare
Pf6N2E2_3460 -1.7 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2507 -1.7 -4.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_6063 -1.6 -6.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4369 -1.6 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2318 -1.6 -5.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2282 -1.6 -3.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_1617 -1.6 -1.5 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2277 -1.5 -1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2513 -1.5 -3.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4678 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_3261 -1.5 -3.7 hypothetical protein compare
Pf6N2E2_2311 -1.5 -5.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2508 -1.5 -2.9 hypothetical protein compare
Pf6N2E2_3835 -1.5 -3.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3791 -1.5 -6.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1147 -1.5 -1.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_309 -1.4 -1.5 FIG00957702: hypothetical protein compare
Pf6N2E2_1463 -1.4 -2.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_2217 -1.4 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5452 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_3841 -1.4 -3.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_6058 -1.4 -3.9 FIG139976: hypothetical protein compare
Pf6N2E2_2527 -1.4 -3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4427 -1.4 -1.8 FIG00954215: hypothetical protein compare
Pf6N2E2_4584 -1.4 -2.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3607 -1.3 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4204 -1.3 -1.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2010 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_3908 -1.3 -4.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2586 -1.3 -1.7 Hpt domain protein compare
Pf6N2E2_2274 -1.3 -3.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4453 -1.3 -8.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_6164 -1.3 -1.2 tRNA-Val-TAC compare
Pf6N2E2_4601 -1.3 -1.4 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2022 -1.3 -4.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2756 -1.3 -4.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4556 -1.3 -3.1 FIG00953078: hypothetical protein compare
Pf6N2E2_4803 -1.3 -1.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2472 -1.2 -2.9 hypothetical protein compare
Pf6N2E2_2514 -1.2 -3.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5319 -1.2 -5.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3412 -1.2 -3.8 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_5523 -1.2 -3.1 Small-conductance mechanosensitive channel compare
Pf6N2E2_3941 -1.2 -2.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2261 -1.2 -4.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_3488 -1.2 -3.6 Cu(I)-responsive transcriptional regulator compare
Pf6N2E2_3942 -1.2 -5.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4706 -1.2 -2.2 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_5337 -1.2 -3.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5668 -1.2 -3.3 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_5207 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_4352 -1.2 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_737 -1.2 -1.8 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_332 -1.2 -3.8 putative nucleoside-diphosphate-sugar epimerase compare
Pf6N2E2_2474 -1.2 -5.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4077 -1.2 -1.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1584 -1.2 -2.4 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_2413 -1.2 -1.4 FIG074102: hypothetical protein compare
Pf6N2E2_3349 -1.2 -1.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4684 -1.2 -3.5 hypothetical protein compare
Pf6N2E2_6057 -1.1 -2.1 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5155 -1.1 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2080 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_5069 -1.1 -3.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4479 -1.1 -2.0 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_2572 -1.1 -2.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3610 -1.1 -2.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1534 -1.1 -1.7 Probable transmembrane protein compare
Pf6N2E2_1577 -1.1 -2.6 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_1248 -1.1 -2.0 MutT/nudix family protein compare
Pf6N2E2_4612 -1.1 -2.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_6059 -1.1 -2.8 FIG008443: hypothetical protein compare
Pf6N2E2_2970 -1.1 -2.4 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_2469 -1.0 -2.8 hypothetical protein compare
Pf6N2E2_1694 -1.0 -1.2 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_4365 -1.0 -4.3 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_2312 -1.0 -1.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_1762 -1.0 -2.6 putative lipase compare
Pf6N2E2_3040 -1.0 -4.0 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2313 -1.0 -2.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3842 -1.0 -2.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4708 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_5986 -1.0 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1671 -1.0 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_2018 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_5705 -1.0 -1.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3783 -1.0 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4705 -1.0 -3.8 Electron transfer flavoprotein, alpha subunit compare
Pf6N2E2_5677 -1.0 -1.0 Carbon storage regulator compare
Pf6N2E2_70 -1.0 -2.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_6060 -1.0 -2.0 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_5510 -1.0 -2.0 FIG00955324: hypothetical protein compare
Pf6N2E2_5950 -1.0 -2.0 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2200 -1.0 -1.2 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5160 -1.0 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5741 -1.0 -3.2 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_855 -1.0 -2.0 Transcriptional regulator, IclR family compare
Pf6N2E2_5720 -1.0 -5.8 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_1824 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_4084 -1.0 -3.8 Transcriptional regulator compare
Pf6N2E2_1082 -1.0 -1.8 CopG protein compare
Pf6N2E2_4424 -0.9 -2.8 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_5544 -0.9 -3.7 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5622 -0.9 -2.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3587 -0.9 -3.0 Azurin compare
Pf6N2E2_4025 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_2755 -0.9 -1.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2278 -0.9 -6.5 Transcription-repair coupling factor compare
Pf6N2E2_4762 -0.9 -2.1 Biotin synthesis protein BioH compare
Pf6N2E2_3667 -0.9 -1.1 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_623 -0.9 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_2281 -0.9 -1.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_5219 -0.9 -3.3 FIG140336: TPR domain protein compare
Pf6N2E2_4982 -0.9 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_2438 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_1626 -0.9 -3.1 Putative ATP-binding component of a transport system compare
Pf6N2E2_5704 -0.9 -2.2 Transcriptional regulatory protein PhoP compare
Pf6N2E2_367 -0.9 -1.7 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_620 -0.9 -3.3 BatD compare
Pf6N2E2_2071 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_89 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_2384 -0.9 -2.0 CmpX compare
Pf6N2E2_3847 -0.9 -2.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3258 -0.9 -2.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3039 -0.9 -3.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5496 -0.9 -1.8 FIG00953991: hypothetical protein compare
Pf6N2E2_3531 -0.9 -3.3 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_145 -0.9 -4.2 putative exported protein compare
Pf6N2E2_142 -0.9 -2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5001 -0.9 -1.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_1305 -0.9 -1.3 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_4418 -0.9 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3373 -0.9 -1.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5024 -0.9 -2.1 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_642 -0.9 -1.7 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_3568 -0.8 -1.8 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_1083 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_5291 -0.8 -6.4 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3690 -0.8 -3.7 Na(+)/H(+) antiporter compare
Pf6N2E2_3027 -0.8 -1.0 Baseplate assembly protein V compare
Pf6N2E2_2675 -0.8 -0.7 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3948 -0.8 -4.7 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3305 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_1778 -0.8 -1.8 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_5068 -0.8 -4.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_1383 -0.8 -2.6 YD repeat protein compare
Pf6N2E2_5223 -0.8 -2.3 Molybdopterin biosynthesis protein MoeB compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments