Experiment set6IT072 for Pseudomonas fluorescens FW300-N2E3

Compare to:

4C survival; 672 hrs

200 most important genes:

  gene name fitness t score description  
AO353_24130 -5.0 -3.4 hypothetical protein compare
AO353_19360 -3.2 -3.1 peroxiredoxin compare
AO353_07315 -3.0 -2.1 rRNA methyltransferase compare
AO353_00825 -2.9 -4.5 porin compare
AO353_00495 -2.9 -2.8 DNA topoisomerase I compare
AO353_05130 -2.8 -1.9 anti-anti-sigma factor compare
AO353_12090 -2.8 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_18715 -2.7 -2.1 histidine kinase compare
AO353_00635 -2.7 -2.6 hypothetical protein compare
AO353_05150 -2.7 -4.1 ABC transporter ATP-binding protein compare
AO353_18785 -2.6 -6.6 flagellar biosynthesis sigma factor compare
AO353_09050 -2.6 -3.1 recombinase XerC compare
AO353_13940 -2.5 -5.3 cytochrome D ubiquinol oxidase subunit I compare
AO353_11190 -2.5 -9.9 ABC transporter compare
AO353_00330 -2.5 -6.8 hypothetical protein compare
AO353_03590 -2.5 -2.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_05135 -2.5 -6.9 toluene tolerance protein compare
AO353_10040 -2.4 -4.9 transcriptional regulator compare
AO353_10950 -2.4 -7.6 thiol:disulfide interchange protein compare
AO353_24040 -2.4 -7.3 iron ABC transporter permease compare
AO353_01975 -2.4 -6.4 glycosyl transferase compare
AO353_23325 -2.4 -5.5 hypothetical protein compare
AO353_13160 -2.4 -1.6 membrane protease HflC compare
AO353_20175 -2.4 -2.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_08245 -2.4 -3.2 cell division ATP-binding protein FtsE compare
AO353_15905 -2.4 -5.5 outer membrane protein assembly factor BamB compare
AO353_18660 -2.4 -6.6 AAA family ATPase compare
AO353_11185 -2.4 -10.0 channel protein TolC compare
AO353_18700 -2.3 -2.7 flagellar biogenesis protein compare
AO353_15250 -2.3 -1.6 cytochrome B compare
AO353_10945 -2.3 -2.2 cytochrome C compare
AO353_18780 -2.3 -5.7 cobyrinic acid a,c-diamide synthase compare
AO353_11195 -2.3 -11.6 hemolysin secretion protein D compare
AO353_06585 -2.3 -4.9 hypothetical protein compare
AO353_09040 -2.3 -2.2 diaminopimelate epimerase compare
AO353_18730 -2.3 -5.9 flagellar motor switch protein FliM compare
AO353_14400 -2.3 -2.7 Fis family transcriptional regulator compare
AO353_24340 -2.3 -2.5 TetR family transcriptional regulator compare
AO353_12345 -2.2 -1.5 twin-arginine protein translocation system subunit TatC compare
AO353_05240 -2.2 -3.0 rod shape-determining protein MreD compare
AO353_10780 -2.2 -2.1 DNA-binding protein compare
AO353_11180 -2.2 -14.6 large adhesive protein compare
AO353_16805 -2.2 -4.3 recombinase RecA compare
AO353_14420 -2.1 -3.6 molecular chaperone DnaK compare
AO353_11170 -2.1 -9.1 hypothetical protein compare
AO353_03425 -2.1 -7.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_06850 -2.1 -4.0 MFS transporter compare
AO353_00455 -2.1 -3.2 beta-hexosaminidase compare
AO353_28425 -2.1 -3.4 TetR family transcriptional regulator compare
AO353_04180 -2.1 -6.2 glycerol kinase compare
AO353_20785 -2.1 -3.7 carbon storage regulator CsrA compare
AO353_18680 -2.1 -5.1 flagellar M-ring protein FliF compare
AO353_08115 -2.1 -5.3 energy transducer TonB compare
AO353_02100 -2.1 -3.1 phosphoglycolate phosphatase compare
AO353_13070 -2.1 -6.4 phosphoserine phosphatase compare
AO353_04190 -2.0 -1.4 glycerol-3-phosphate dehydrogenase compare
AO353_05840 -2.0 -10.0 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_02000 -2.0 -3.6 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_02640 -2.0 -1.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_00750 -2.0 -3.6 GntR family transcriptional regulator compare
AO353_09890 -2.0 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_06455 -2.0 -2.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_10070 -2.0 -7.7 cell wall assembly protein compare
AO353_18650 -2.0 -6.3 flagellar export chaperone FliS compare
AO353_02845 -2.0 -11.2 flagellar biosynthesis protein FlgE compare
AO353_18600 -2.0 -3.8 flagellar basal-body rod protein FlgG compare
AO353_27720 -2.0 -4.9 cupin compare
AO353_08080 -2.0 -5.9 chemotaxis protein compare
AO353_09135 -1.9 -1.9 cytochrome C compare
AO353_17290 -1.9 -4.8 multidrug transporter compare
AO353_13945 -1.9 -4.7 ubiquinol oxidase subunit II compare
AO353_17635 -1.9 -6.1 RNA polymerase subunit sigma compare
AO353_13200 -1.9 -7.6 exoribonuclease R compare
AO353_02480 -1.9 -6.5 peptidylprolyl isomerase compare
AO353_18830 -1.9 -4.2 chemotaxis protein CheW compare
AO353_05140 -1.9 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_20185 -1.9 -5.1 DNA-binding protein compare
AO353_15830 -1.9 -2.6 transcriptional regulator compare
AO353_16365 -1.9 -11.9 multidrug transporter AcrB compare
AO353_18625 -1.8 -8.8 flagellar biosynthesis protein FlgL compare
AO353_18675 -1.8 -5.1 flagellar hook-basal body protein FliE compare
AO353_18615 -1.8 -7.6 flagellar biosynthesis protein FlgJ compare
AO353_12070 -1.8 -6.5 imidazoleglycerol-phosphate dehydratase compare
AO353_03580 -1.8 -2.2 ATP-dependent DNA helicase RuvB compare
AO353_14775 -1.8 -5.9 hypothetical protein compare
AO353_00505 -1.8 -3.4 3-ketoacyl-CoA thiolase compare
AO353_24030 -1.8 -7.6 ABC transporter ATP-binding protein compare
AO353_14150 -1.8 -1.2 peptidylprolyl isomerase compare
AO353_24035 -1.8 -7.1 iron ABC transporter permease compare
AO353_01405 -1.8 -5.9 23S rRNA pseudouridylate synthase compare
AO353_25990 -1.8 -5.3 aspartyl beta-hydroxylase compare
AO353_07155 -1.8 -5.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_20370 -1.8 -3.3 MerR family transcriptional regulator compare
AO353_27000 -1.8 -1.9 hypothetical protein compare
AO353_24045 -1.8 -4.6 iron ABC transporter ATP-binding protein compare
AO353_27650 -1.8 -3.7 cell division protein FtsK compare
AO353_20865 -1.8 -2.5 cold-shock protein compare
AO353_06490 -1.8 -2.4 nicotinate-nucleotide adenylyltransferase compare
AO353_05690 -1.8 -3.1 SsrA-binding protein compare
AO353_05105 -1.8 -7.8 histidinol-phosphate aminotransferase compare
AO353_09235 -1.7 -6.3 phosphoglucomutase compare
AO353_07355 -1.7 -4.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_17025 -1.7 -9.8 beta-agarase compare
AO353_11770 -1.7 -1.2 molecular chaperone Hsp33 compare
AO353_23495 -1.7 -2.5 SAM-dependent methyltransferase compare
AO353_13005 -1.7 -8.9 channel protein TolC compare
AO353_10030 -1.7 -7.1 pyruvate carboxylase subunit A compare
AO353_18685 -1.7 -6.4 flagellar motor switch protein FliG compare
AO353_08540 -1.7 -7.1 alpha/beta hydrolase compare
AO353_26280 -1.7 -3.1 peptidase M48, Ste24p compare
AO353_09000 -1.7 -4.1 argininosuccinate lyase compare
AO353_02280 -1.7 -1.8 DNA mismatch repair protein MutS compare
AO353_01410 -1.7 -2.0 ribonuclease E compare
AO353_02320 -1.7 -5.6 allantoinase compare
AO353_05145 -1.7 -5.0 ABC transporter permease compare
AO353_18750 -1.7 -5.6 flagellar biosynthetic protein FliQ compare
AO353_15170 -1.7 -2.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_24025 -1.7 -6.4 ABC transporter ATP-binding protein compare
AO353_17300 -1.7 -5.1 antibiotic transporter compare
AO353_12115 -1.6 -1.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12085 -1.6 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12105 -1.6 -4.9 peptidase S41 compare
AO353_00650 -1.6 -2.7 cytochrome biogenesis protein compare
AO353_03615 -1.6 -2.7 cold-shock protein compare
AO353_27920 -1.6 -4.3 arginine N-succinyltransferase compare
AO353_25925 -1.6 -1.7 hypothetical protein compare
AO353_02570 -1.6 -1.8 hypothetical protein compare
AO353_06045 -1.6 -4.6 exodeoxyribonuclease V subunit beta compare
AO353_06720 -1.6 -2.2 NrdR family transcriptional regulator compare
AO353_05440 -1.6 -6.4 glycine/betaine ABC transporter ATP-binding protein compare
AO353_18755 -1.6 -5.1 flagellar biosynthetic protein FliR compare
AO353_03520 -1.6 -2.6 hypothetical protein compare
AO353_24440 -1.6 -2.0 reactive intermediate/imine deaminase compare
AO353_15885 -1.6 -4.1 Cro/Cl family transcriptional regulator compare
AO353_12880 -1.6 -1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_27895 -1.6 -5.0 isochorismatase compare
AO353_18635 -1.6 -7.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_18760 -1.6 -5.8 flagellar biosynthetic protein FlhB compare
AO353_10025 -1.6 -9.0 pyruvate carboxylase subunit B compare
AO353_09030 -1.5 -1.2 iron donor protein CyaY compare
AO353_00510 -1.5 -3.4 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_05425 -1.5 -3.9 glycine/betaine ABC transporter permease compare
AO353_08105 -1.5 -3.8 pilus assembly protein PilG compare
AO353_16195 -1.5 -1.4 DNA mismatch repair protein MutT compare
AO353_18425 -1.5 -3.7 hypothetical protein compare
AO353_05430 -1.5 -7.7 glycine/betaine ABC transporter substrate-binding protein compare
AO353_18690 -1.5 -4.5 flagellar assembly protein FliH compare
AO353_10505 -1.5 -3.3 hypothetical protein compare
AO353_18695 -1.5 -6.3 flagellar protein export ATPase FliI compare
AO353_17295 -1.5 -10.4 multidrug transporter compare
AO353_07780 -1.5 -7.4 Carnitine ABC transporter, substrate-binding component CaiX (from data) compare
AO353_14740 -1.5 -2.5 GTP-binding protein compare
AO353_14115 -1.5 -4.3 gamma-glutamyl kinase compare
AO353_21415 -1.5 -4.6 hypothetical protein compare
AO353_10455 -1.5 -1.8 tRNA modification GTPase MnmE compare
AO353_09720 -1.5 -1.1 hypothetical protein compare
AO353_06100 -1.5 -1.0 thymidylate synthase compare
AO353_19750 -1.5 -1.8 diaminopimelate epimerase compare
AO353_12350 -1.5 -2.3 preprotein translocase compare
AO353_13640 -1.5 -3.1 histidine kinase compare
AO353_14940 -1.5 -2.6 malate:quinone oxidoreductase compare
AO353_02810 -1.5 -5.6 histidine kinase compare
AO353_04055 -1.5 -1.5 methionine--tRNA ligase compare
AO353_00430 -1.5 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_19770 -1.5 -1.8 peptidase compare
AO353_18720 -1.5 -6.8 flagellar hook-length control protein compare
AO353_10035 -1.5 -6.0 LysR family transcriptional regulator compare
AO353_18605 -1.5 -4.6 flagellar basal body L-ring protein compare
AO353_01355 -1.5 -6.0 3-oxoacyl-ACP synthase compare
AO353_18825 -1.5 -6.6 chemotaxis protein CheW compare
AO353_06415 -1.5 -3.3 hypothetical protein compare
AO353_03775 -1.5 -5.9 pyruvate kinase compare
AO353_18420 -1.5 -3.9 hypothetical protein compare
AO353_12095 -1.5 -5.8 amino acid ABC transporter substrate-binding protein compare
AO353_18620 -1.5 -10.2 flagellar biosynthesis protein FlgK compare
AO353_04155 -1.5 -7.0 ornithine carbamoyltransferase compare
AO353_02855 -1.5 -4.9 flagellar basal-body rod protein FlgC compare
AO353_02010 -1.5 -4.7 glycosyl transferase family 1 compare
AO353_14380 -1.4 -3.4 pantoate--beta-alanine ligase compare
AO353_05800 -1.4 -4.0 hypothetical protein compare
AO353_16415 -1.4 -7.4 beta-(1-3)-glucosyl transferase compare
AO353_18800 -1.4 -4.8 chemotaxis protein CheA compare
AO353_12470 -1.4 -9.3 peptidase compare
AO353_05435 -1.4 -5.3 choline ABC transporter permease compare
AO353_18655 -1.4 -3.0 flagellar assembly protein FliT compare
AO353_02875 -1.4 -5.6 flagellar biosynthesis protein FlgA compare
AO353_21410 -1.4 -1.5 hypothetical protein compare
AO353_12690 -1.4 -1.0 acyl carrier protein compare
AO353_06495 -1.4 -3.6 gamma-glutamyl phosphate reductase compare
AO353_13155 -1.4 -2.8 hypothetical protein compare
AO353_02660 -1.4 -3.3 peptidase P60 compare
AO353_06540 -1.4 -2.1 hypothetical protein compare
AO353_01305 -1.4 -5.6 hypothetical protein compare
AO353_06050 -1.4 -4.4 exodeoxyribonuclease V subunit gamma compare
AO353_28935 -1.4 -2.4 ATPase compare
AO353_07145 -1.4 -6.3 anhydro-N-acetylmuramic acid kinase compare
AO353_17035 -1.4 -4.0 hypothetical protein compare
AO353_08085 -1.4 -8.2 histidine kinase compare
AO353_21945 -1.4 -2.1 protein nirL compare
AO353_18645 -1.4 -8.0 flagellar cap protein FliD compare


Specific Phenotypes

For 85 genes in this experiment