Experiment set6IT072 for Rhodospirillum rubrum S1H

Compare to:

Succinic Acid; Light intensity 150 uM

200 most important genes:

  gene name fitness t score description  
Rru_A3602 -1.9 -1.4 Smr protein/MutS2-like (NCBI) compare
Rru_A3221 -1.6 -1.4 hypothetical protein (NCBI) compare
Rru_A0152 -1.6 -1.4 hypothetical protein (NCBI) compare
Rru_A1937 -1.5 -0.7 hypothetical protein (NCBI) compare
Rru_A1895 -1.4 -1.3 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A2706 -1.4 -1.3 Ankyrin (NCBI) compare
Rru_A1867 -1.3 -1.8 Protein of unknown function DUF583 (NCBI) compare
Rru_A0967 -1.3 -0.6 Carbon-monoxide dehydrogenase (NCBI) compare
Rru_A0432 -1.3 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A2216 -1.2 -2.2 Protein of unknown function DUF1127 (NCBI) compare
Rru_A3186 -1.2 -0.7 hypothetical protein (NCBI) compare
Rru_A0645 -1.2 -0.4 Ribose-phosphate pyrophosphokinase (NCBI) compare
Rru_A1311 -1.1 -1.4 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A3023 -1.1 -1.7 hypothetical protein (NCBI) compare
Rru_A2055 -1.1 -0.6 Peptidase S49 (NCBI) compare
Rru_A0509 -1.0 -2.3 hypothetical protein (NCBI) compare
Rru_A0647 -1.0 -1.2 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit (NCBI) compare
Rru_A0203 -1.0 -0.3 hypothetical protein (NCBI) compare
Rru_A0135 -1.0 -3.7 molybdenum ABC transporter ATP-binding protein (NCBI) compare
Rru_A0824 -1.0 -1.9 no description compare
Rru_A1614 -1.0 -2.5 hypothetical protein (NCBI) compare
Rru_A2961 -1.0 -1.7 hypothetical protein (NCBI) compare
Rru_A1938 -1.0 -2.2 Protein of unknown function DUF519 (NCBI) compare
Rru_A1476 -1.0 -2.1 PhnA protein (NCBI) compare
Rru_A3425 -0.9 -3.0 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A0996 -0.9 -3.4 Leucine rich repeat variant (NCBI) compare
Rru_A1432 -0.9 -4.3 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A2445 -0.9 -1.0 Protein of unknown function DUF140 (NCBI) compare
Rru_A3603 -0.9 -1.3 Protein of unknown function DUF162 (NCBI) compare
Rru_A2766 -0.9 -2.0 Protein of unknown function DUF329 (NCBI) compare
Rru_A0516 -0.9 -2.1 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A1131 -0.9 -2.8 Aminotransferase, class IV (NCBI) compare
Rru_A0383 -0.9 -2.7 SH3 domain protein (NCBI) compare
Rru_A2034 -0.9 -6.9 Phosphate transporter (NCBI) compare
Rru_A3682 -0.9 -1.8 Cytochrome B561 (NCBI) compare
Rru_A0673 -0.9 -3.0 hypothetical protein (NCBI) compare
Rru_A0318 -0.9 -0.8 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) compare
Rru_A2927 -0.9 -7.4 Acriflavin resistance protein (NCBI) compare
Rru_A2451 -0.9 -2.5 Putative diguanylate cyclase (GGDEF domain) (NCBI) compare
Rru_A1179 -0.9 -0.3 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0302 -0.9 -2.0 Hydrogenase accessory protein HypB (NCBI) compare
Rru_A1694 -0.9 -2.8 hypothetical protein (NCBI) compare
Rru_A0160 -0.9 -2.4 hypothetical protein (NCBI) compare
Rru_A3466 -0.9 -3.2 Ornithine aminotransferase (NCBI) compare
Rru_A1278 -0.9 -3.0 Sulfotransferase (NCBI) compare
Rru_A2393 -0.8 -0.8 hypothetical protein (NCBI) compare
Rru_A2111 -0.8 -3.0 hypothetical protein (NCBI) compare
Rru_A3427 -0.8 -6.1 Tryptophan synthase, beta chain (NCBI) compare
Rru_A0615 -0.8 -1.1 photosynthetic complex assembly protein (NCBI) compare
Rru_A1424 -0.8 -1.3 NADH dehydrogenase (ubiquinone), 30 kDa subunit (NCBI) compare
Rru_A1737 -0.8 -2.5 hypothetical protein (NCBI) compare
Rru_A3737 -0.8 -2.3 KAP P-loop (NCBI) compare
Rru_A1177 -0.8 -3.3 chemotaxis sensory transducer (NCBI) compare
Rru_A1736 -0.8 -2.3 hypothetical protein (NCBI) compare
Rru_A2912 -0.8 -2.5 Propeptide, PepSY amd peptidase M4 (NCBI) compare
Rru_A0788 -0.8 -1.1 ABC transporter component (NCBI) compare
Rru_A0097 -0.8 -0.4 Class I peptide chain release factor (NCBI) compare
Rru_A2839 -0.8 -2.9 hypothetical protein (NCBI) compare
Rru_A3428 -0.8 -5.0 Tryptophan synthase (NCBI) compare
Rru_A0585 -0.8 -1.2 ABC transporter component (NCBI) compare
Rru_A2143 -0.8 -1.6 methyltransferase (NCBI) compare
Rru_A1731 -0.8 -0.8 hypothetical protein (NCBI) compare
Rru_A2391 -0.8 -1.2 hypothetical protein (NCBI) compare
Rru_A3587 -0.8 -0.8 hypothetical protein (NCBI) compare
Rru_A0534 -0.8 -1.8 hypothetical protein (NCBI) compare
Rru_A1618 -0.8 -1.3 hypothetical protein (NCBI) compare
Rru_A0675 -0.8 -2.7 hypothetical protein (NCBI) compare
Rru_A3724 -0.8 -2.7 ABC transporter component (NCBI) compare
Rru_A1786 -0.8 -5.2 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A3484 -0.8 -3.9 Secretion protein HlyD (NCBI) compare
Rru_A2641 -0.8 -2.8 hypothetical protein (NCBI) compare
Rru_A1758 -0.8 -1.2 hypothetical protein (NCBI) compare
Rru_A0307 -0.8 -1.2 Hydrogenase expression/formation protein (HUPF/HYPC) (NCBI) compare
Rru_A2920 -0.7 -2.6 hypothetical protein (NCBI) compare
Rru_A1911 -0.7 -4.4 Ferric uptake regulator (FUR) family (NCBI) compare
Rru_A3157 -0.7 -1.6 hypothetical protein (NCBI) compare
Rru_A1953 -0.7 -1.3 hypothetical protein (NCBI) compare
Rru_A1611 -0.7 -0.8 Cobalamin synthesis protein/P47K (NCBI) compare
Rru_A0282 -0.7 -1.5 Protein of unknown function DUF204 (NCBI) compare
Rru_A0212 -0.7 -0.7 hypothetical protein (NCBI) compare
Rru_A1523 -0.7 -0.9 Hemerythrin (NCBI) compare
Rru_A1984 -0.7 -1.0 nitrogen fixation-related protein (NCBI) compare
Rru_A3222 -0.7 -1.6 transport system permease protein (NCBI) compare
Rru_A1126 -0.7 -0.8 ISBm1, transposase orfA (NCBI) compare
Rru_A2592 -0.7 -1.4 hypothetical protein (NCBI) compare
Rru_A1487 -0.7 -2.6 Polysaccharide export protein (NCBI) compare
Rru_A1031 -0.7 -1.4 Ethanolamine ammonia-lyase (NCBI) compare
Rru_A0573 -0.7 -1.4 hypothetical protein (NCBI) compare
Rru_A1327 -0.7 -0.8 hypothetical protein (NCBI) compare
Rru_A3119 -0.7 -1.7 ATPases involved in chromosome partitioning-like (NCBI) compare
Rru_A3551 -0.7 -2.4 Aldo/keto reductase (NCBI) compare
Rru_A3491 -0.7 -1.9 hypothetical protein (NCBI) compare
Rru_A1453 -0.7 -1.8 Phage Tail Collar (NCBI) compare
Rru_A1854 -0.7 -2.1 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) compare
Rru_A3589 -0.7 -1.6 Mg chelatase-related protein (NCBI) compare
Rru_A3717 -0.7 -1.3 Glycosyl transferase WecB/TagA/CpsF (NCBI) compare
Rru_A1515 -0.7 -3.1 Transposase, IS4 (NCBI) compare
Rru_A2833 -0.7 -1.6 hypothetical protein (NCBI) compare
Rru_A1313 -0.7 -5.4 Membrane protein involved in aromatic hydrocarbon degradation (NCBI) compare
Rru_A0639 -0.7 -1.7 Regulatory protein RecX (NCBI) compare
Rru_A0013 -0.7 -1.2 hypothetical protein (NCBI) compare
Rru_A3098 -0.7 -2.3 hypothetical protein (NCBI) compare
Rru_A3426 -0.7 -4.3 hypothetical protein (NCBI) compare
Rru_A1473 -0.7 -0.6 hypothetical protein (NCBI) compare
Rru_A0550 -0.7 -3.1 TPR repeat (NCBI) compare
Rru_A0163 -0.7 -0.7 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A2343 -0.7 -0.8 Protein of unknown function DUF83 (NCBI) compare
Rru_A3414 -0.7 -2.7 ABC transporter component (NCBI) compare
Rru_A0129 -0.6 -0.7 hypothetical protein (NCBI) compare
Rru_A3302 -0.6 -3.5 Glucan 1,4-alpha-glucosidase (NCBI) compare
Rru_A1513 -0.6 -0.9 hypothetical protein (NCBI) compare
Rru_A3227 -0.6 -2.5 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A1810 -0.6 -1.8 hypothetical protein (NCBI) compare
Rru_A0817 -0.6 -0.8 Transposase, mutator type (NCBI) compare
Rru_A3256 -0.6 -0.9 Protein of unknown function DUF218 (NCBI) compare
Rru_A2427 -0.6 -1.6 LrgB-like protein (NCBI) compare
Rru_A3519 -0.6 -1.9 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A1964 -0.6 -2.6 Adenylosuccinate synthase (NCBI) compare
Rru_A3025 -0.6 -2.8 hypothetical protein (NCBI) compare
Rru_A3274 -0.6 -2.7 hypothetical protein (NCBI) compare
Rru_A2131 -0.6 -1.3 hypothetical protein (NCBI) compare
Rru_A3007 -0.6 -2.4 SOUL heme-binding protein (NCBI) compare
Rru_A2158 -0.6 -2.6 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) compare
Rru_A2453 -0.6 -2.1 membrane anion transport protein (NCBI) compare
Rru_A2614 -0.6 -1.0 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) compare
Rru_A0391 -0.6 -1.5 hypothetical protein (NCBI) compare
Rru_A0100 -0.6 -0.4 hypothetical protein (NCBI) compare
Rru_A0016 -0.6 -3.0 3-beta-hydroxy-delta(5)-steroid dehydrogenase (NCBI) compare
Rru_A3750 -0.6 -2.7 hypothetical protein (NCBI) compare
Rru_A2241 -0.6 -0.6 hypothetical protein (NCBI) compare
Rru_A2330 -0.6 -1.5 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A0243 -0.6 -1.8 tRNA/rRNA cytosine-C5-methylase (NCBI) compare
Rru_A3760 -0.6 -2.8 regulatory protein GntR (NCBI) compare
Rru_A2191 -0.6 -4.1 AMP-dependent synthetase and ligase (NCBI) compare
Rru_A0679 -0.6 -3.3 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A2224 -0.6 -0.8 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A0467 -0.6 -3.2 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A2574 -0.6 -0.5 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A2122 -0.6 -3.1 hypothetical protein (NCBI) compare
Rru_A0199 -0.6 -1.1 hypothetical protein (NCBI) compare
Rru_A0116 -0.6 -1.4 hypothetical protein (NCBI) compare
Rru_A1602 -0.6 -3.2 ComEC/Rec2-related protein (NCBI) compare
Rru_A3105 -0.6 -2.9 glycosyl transferases group 1 (NCBI) compare
Rru_A2464 -0.6 -1.4 Hydroxypyruvate reductase (NCBI) compare
Rru_A0906 -0.6 -2.9 polyhedral shell protein, EutL/PduB type (NCBI) compare
Rru_A2886 -0.6 -4.6 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A3277 -0.6 -1.7 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A3139 -0.6 -2.3 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A3343 -0.6 -3.2 pyrimidine 5-nucleotidase (NCBI) compare
Rru_A0640 -0.6 -3.7 ABC-2 transporter component (NCBI) compare
Rru_A2043 -0.6 -1.8 hypothetical protein (NCBI) compare
Rru_A3267 -0.6 -1.9 Methionine biosynthesis MetW (NCBI) compare
Rru_A0301 -0.6 -2.3 Alkylhydroperoxidase AhpD core (NCBI) compare
Rru_A3571 -0.6 -1.4 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) compare
Rru_A3441 -0.6 -1.4 Transcriptional Regulator, PadR-like family (NCBI) compare
Rru_A0821 -0.6 -1.7 hypothetical protein (NCBI) compare
Rru_A0187 -0.6 -1.6 hypothetical protein (NCBI) compare
Rru_A0404 -0.6 -4.4 Amidophosphoribosyl transferase (NCBI) compare
Rru_A2380 -0.6 -2.7 Major facilitator superfamily MFS_1 (NCBI) compare
Rru_A2926 -0.6 -3.0 RND efflux system, outer membrane lipoprotein, NodT (NCBI) compare
Rru_A2006 -0.6 -2.3 L-carnitine dehydratase/bile acid-inducible protein F (NCBI) compare
Rru_A2775 -0.6 -2.7 Dienelactone hydrolase (NCBI) compare
Rru_A3362 -0.6 -1.3 Uroporphyrin-III C-methyltransferase-like (NCBI) compare
Rru_A1719 -0.6 -0.9 Thioesterase superfamily (NCBI) compare
Rru_A3388 -0.5 -1.6 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) compare
Rru_A2375 -0.5 -1.0 hypothetical protein (NCBI) compare
Rru_A1321 -0.5 -0.7 Biotin--acetyl-CoA-carboxylase ligase (NCBI) compare
Rru_A1901 -0.5 -2.0 chemotaxis sensory transducer (NCBI) compare
Rru_A2207 -0.5 -1.6 hypothetical protein (NCBI) compare
Rru_A0180 -0.5 -0.8 hypothetical protein (NCBI) compare
Rru_A0883 -0.5 -0.7 Sigma-24 (FecI) (NCBI) compare
Rru_A0490 -0.5 -0.5 transport system permease protein (NCBI) compare
Rru_A0836 -0.5 -1.9 hypothetical protein (NCBI) compare
Rru_A3002 -0.5 -1.8 Nicotinamidase (NCBI) compare
Rru_A2008 -0.5 -3.5 Thiamine biosynthesis protein ThiC (NCBI) compare
Rru_A0528 -0.5 -2.8 Heat shock protein DnaJ-like (NCBI) compare
Rru_A2778 -0.5 -1.4 Plasmid maintenance system killer (NCBI) compare
Rru_A2108 -0.5 -3.1 Multi-sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A3118 -0.5 -2.1 Lipopolysaccharide biosynthesis (NCBI) compare
Rru_A0169 -0.5 -2.9 Protein of unknown function DUF48 (NCBI) compare
Rru_A2311 -0.5 -1.8 Transcriptional Regulator, IclR family (NCBI) compare
Rru_A1257 -0.5 -2.8 hypothetical protein (NCBI) compare
Rru_A2924 -0.5 -1.4 Glycosyl transferase, family 2 (NCBI) compare
Rru_A0698 -0.5 -0.8 Lipolytic enzyme (NCBI) compare
Rru_A2856 -0.5 -2.5 putative flagellar protein FlaF (NCBI) compare
Rru_A2824 -0.5 -1.5 Flagellar hook-basal body complex protein FliE (NCBI) compare
Rru_A3510 -0.5 -1.8 ABC transporter component (NCBI) compare
Rru_A3577 -0.5 -1.8 Protein of unknown function DUF6, transmembrane (NCBI) compare
Rru_A0254 -0.5 -2.1 NAD-dependent epimerase/dehydratase (NCBI) compare
Rru_AR0059 -0.5 -0.7 tRNA-Gly (NCBI) compare
Rru_A0443 -0.5 -2.4 hypothetical protein (NCBI) compare
Rru_A2106 -0.5 -3.1 Protein of unknown function DUF534 (NCBI) compare
Rru_A3374 -0.5 -1.9 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI) compare
Rru_A1643 -0.5 -1.0 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A3634 -0.5 -0.9 Protein of unknown function UPF0001 (NCBI) compare
Rru_A2859 -0.5 -2.9 hypothetical protein (NCBI) compare
Rru_A0376 -0.5 -2.7 Transcriptional Regulator, LytR/AlgR family (NCBI) compare
Rru_A2144 -0.5 -0.8 hypothetical protein (RefSeq) compare
Rru_A1610 -0.5 -1.2 hypothetical protein (NCBI) compare
Rru_A3026 -0.5 -2.5 HPr kinase (NCBI) compare


Specific Phenotypes

For 9 genes in this experiment

For light Succinic Acid in Rhodospirillum rubrum S1H

For light Succinic Acid across organisms