Experiment set6IT071 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB 10C

200 most important genes:

  gene name fitness t score description  
AO356_19425 -5.8 -4.0 lipid A biosynthesis lauroyl acyltransferase compare
AO356_07390 -4.9 -3.4 polyribonucleotide nucleotidyltransferase compare
AO356_13770 -4.6 -8.2 ATP-dependent RNA helicase compare
AO356_14295 -4.5 -3.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_22795 -3.9 -4.6 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_18805 -3.7 -2.6 magnesium transporter compare
AO356_14335 -3.7 -6.2 rRNA methyltransferase compare
AO356_08930 -3.3 -4.4 heptose kinase compare
AO356_17890 -3.2 -3.5 H-NS histone compare
AO356_08585 -3.1 -5.1 50S ribosomal protein L9 compare
AO356_08905 -3.1 -4.3 glycosyl transferase compare
AO356_02315 -3.0 -5.4 DNA topoisomerase I compare
AO356_08895 -3.0 -3.5 GlcNAc-PI de-N-acetylase compare
AO356_20175 -2.9 -3.3 3-oxoacyl-ACP synthase compare
AO356_02265 -2.7 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_08925 -2.7 -7.1 lipopolysaccharide kinase compare
AO356_19420 -2.7 -3.1 septum formation inhibitor compare
AO356_07480 -2.6 -3.9 carbamoyl phosphate synthase large subunit compare
AO356_02335 -2.5 -4.8 hypothetical protein compare
AO356_11025 -2.4 -5.9 transcriptional regulator PhoU compare
AO356_02800 -2.4 -4.0 transporter compare
AO356_06575 -2.4 -4.5 outer membrane protein assembly factor BamB compare
AO356_17520 -2.4 -2.8 phosphoribosylformylglycinamidine synthase compare
AO356_01745 -2.4 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_09835 -2.2 -5.3 iron transporter compare
AO356_01750 -2.2 -4.5 ATP-dependent Clp protease proteolytic subunit compare
AO356_15165 -2.2 -3.3 protein cII compare
AO356_22095 -2.1 -7.0 cupin compare
AO356_21125 -2.1 -6.6 cyclic peptide transporter compare
AO356_11585 -2.0 -4.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_17065 -2.0 -2.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_16070 -2.0 -7.5 poly(A) polymerase compare
AO356_04275 -2.0 -2.5 3-oxoacyl-ACP synthase compare
AO356_17070 -2.0 -3.7 cytochrome B compare
AO356_05995 -1.9 -3.7 hypothetical protein compare
AO356_08610 -1.9 -6.6 exoribonuclease R compare
AO356_11030 -1.9 -10.9 phosphate ABC transporter ATP-binding protein compare
AO356_08910 -1.9 -5.6 carbamoyltransferase compare
AO356_27180 -1.7 -3.4 hypothetical protein compare
AO356_01570 -1.7 -6.1 hydroxymethylglutaryl-CoA lyase compare
AO356_12520 -1.7 -2.8 orotate phosphoribosyltransferase compare
AO356_16450 -1.7 -4.8 GTP-binding protein compare
AO356_17485 -1.7 -4.9 elongation factor 4 compare
AO356_08875 -1.7 -2.6 toluene tolerance protein compare
AO356_07910 -1.6 -2.4 exodeoxyribonuclease V subunit alpha compare
AO356_11420 -1.6 -8.6 histidine kinase compare
AO356_06690 -1.6 -3.5 queuine tRNA-ribosyltransferase compare
AO356_18780 -1.5 -2.3 carbon storage regulator compare
AO356_11040 -1.5 -11.6 phosphate ABC transporter permease compare
AO356_19050 -1.5 -2.9 cysteine synthase compare
AO356_11450 -1.5 -2.5 cytochrome C compare
AO356_20830 -1.4 -3.6 phosphoadenosine phosphosulfate reductase compare
AO356_15925 -1.4 -5.3 ribosomal large subunit pseudouridine synthase D compare
AO356_00575 -1.4 -2.8 SCP-2 family sterol carrier protein compare
AO356_11315 -1.4 -1.5 shikimate dehydrogenase compare
AO356_08590 -1.4 -7.2 hypothetical protein compare
AO356_12900 -1.3 -3.3 exopolyphosphatase compare
AO356_19080 -1.3 -7.8 dehydrogenase compare
AO356_11090 -1.3 -4.4 aspartate ammonia-lyase compare
AO356_17770 -1.3 -2.1 hypothetical protein compare
AO356_08320 -1.3 -3.0 copper resistance protein CopZ compare
AO356_10185 -1.3 -7.2 glutamate--cysteine ligase compare
AO356_04560 -1.2 -2.7 serine peptidase compare
AO356_13445 -1.2 -2.0 dihydroorotase compare
AO356_07600 -1.2 -2.2 hypothetical protein compare
AO356_18020 -1.2 -3.0 ATP-dependent DNA helicase RuvA compare
AO356_08660 -1.2 -6.8 tRNA dimethylallyltransferase compare
AO356_00920 -1.2 -2.5 cold-shock protein compare
AO356_07005 -1.1 -1.4 ABC transporter ATP-binding protein compare
AO356_05540 -1.1 -2.1 cold-shock protein compare
AO356_02465 -1.1 -2.4 carbonate dehydratase compare
AO356_16075 -1.1 -3.8 Fis family transcriptional regulator compare
AO356_03405 -1.1 -3.2 serine acetyltransferase compare
AO356_20475 -1.1 -1.3 hypothetical protein compare
AO356_27995 -1.1 -1.9 thioredoxin reductase compare
AO356_02860 -1.1 -2.0 histidine kinase compare
AO356_05670 -1.0 -2.1 recombinase RecA compare
AO356_17985 -1.0 -4.7 cold-shock protein compare
AO356_17515 -1.0 -7.0 murein transglycosylase compare
AO356_24655 -1.0 -3.2 hypothetical protein compare
AO356_03350 -1.0 -4.4 glycosyl transferase compare
AO356_29795 -1.0 -2.2 amino acid transporter compare
AO356_16170 -1.0 -6.7 acetolactate synthase 3 catalytic subunit compare
AO356_07090 -1.0 -1.3 hypothetical protein compare
AO356_21465 -1.0 -3.7 amidophosphoribosyltransferase compare
AO356_09810 -1.0 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
AO356_01050 -1.0 -7.3 hypothetical protein compare
AO356_15325 -1.0 -1.7 hypothetical protein compare
AO356_12640 -1.0 -1.9 cytochrome C compare
AO356_20875 -1.0 -4.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_06995 -0.9 -3.4 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_17075 -0.9 -2.0 cytochrome C compare
AO356_08890 -0.9 -5.7 glycosyltransferase compare
AO356_13685 -0.9 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_26040 -0.9 -1.5 hypothetical protein compare
AO356_28445 -0.9 -2.0 decarboxylase compare
AO356_24335 -0.9 -1.7 type VI secretion protein compare
AO356_16600 -0.9 -1.2 malate:quinone oxidoreductase compare
AO356_18025 -0.9 -2.3 ATP-dependent DNA helicase RuvB compare
AO356_11035 -0.9 -4.9 phosphate ABC transporter permease compare
AO356_03885 -0.9 -5.5 beta-ketoacyl-ACP synthase compare
AO356_07540 -0.9 -1.8 SsrA-binding protein compare
AO356_28975 -0.9 -2.9 alkanesulfonate monooxygenase compare
AO356_03360 -0.9 -2.5 hypothetical protein compare
AO356_15200 -0.9 -5.6 hypothetical protein compare
AO356_09940 -0.9 -1.1 hypothetical protein compare
AO356_02425 -0.9 -5.1 cytochrome C oxidase Cbb3 compare
AO356_01740 -0.9 -2.1 DNA-binding protein compare
AO356_28255 -0.9 -1.8 class III aminotransferase compare
AO356_02190 -0.9 -4.0 hypothetical protein compare
AO356_22125 -0.9 -3.5 isocitrate dehydrogenase compare
AO356_05415 -0.8 -3.5 hypothetical protein compare
AO356_05735 -0.8 -1.4 hypothetical protein compare
AO356_27280 -0.8 -1.6 XRE family transcriptional regulator compare
AO356_03010 -0.8 -2.4 glutaredoxin compare
AO356_16175 -0.8 -4.6 acetolactate synthase 3 regulatory subunit compare
AO356_24845 -0.8 -1.5 ATPase compare
AO356_03500 -0.8 -2.6 3-oxoacyl-ACP reductase compare
AO356_01940 -0.8 -1.9 hypothetical protein compare
AO356_20800 -0.8 -1.4 hypothetical protein compare
AO356_06990 -0.8 -3.2 toluene tolerance protein compare
AO356_12945 -0.8 -3.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_25420 -0.8 -1.5 chemotaxis protein CheY compare
AO356_16955 -0.8 -4.1 disulfide bond formation protein B compare
AO356_27310 -0.8 -2.8 LysR family transcriptional regulator compare
AO356_23500 -0.8 -4.6 TetR family transcriptional regulator compare
AO356_01755 -0.8 -2.2 trigger factor compare
AO356_19180 -0.8 -3.3 cobalamin synthase compare
AO356_06385 -0.8 -2.1 recombinase XerD compare
AO356_17035 -0.8 -3.2 ATPase compare
AO356_24745 -0.8 -1.1 iron dicitrate transport regulator FecR compare
AO356_22665 -0.8 -2.4 chemotaxis protein compare
AO356_25835 -0.8 -2.3 hypothetical protein compare
AO356_01045 -0.7 -2.8 hypothetical protein compare
AO356_09755 -0.7 -3.4 preprotein translocase subunit SecB compare
AO356_14505 -0.7 -1.7 peptidase M23 compare
AO356_08325 -0.7 -2.3 predicted copper homeostasis protein (from data) compare
AO356_13605 -0.7 -4.9 5,10-methylenetetrahydrofolate reductase compare
AO356_16835 -0.7 -2.8 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO356_23815 -0.7 -3.8 amidase compare
AO356_02720 -0.7 -1.5 type III secretion protein compare
AO356_15920 -0.7 -2.4 DNA transporter compare
AO356_25150 -0.7 -1.4 molybdenum cofactor biosynthesis protein B compare
AO356_15420 -0.7 -3.0 hypothetical protein compare
AO356_02005 -0.7 -1.9 hypothetical protein compare
AO356_13575 -0.7 -5.4 amine oxidase compare
AO356_12485 -0.7 -2.6 DNA-directed RNA polymerase subunit omega compare
AO356_04205 -0.7 -2.0 hypothetical protein compare
AO356_24645 -0.7 -3.4 hypothetical protein compare
AO356_18855 -0.7 -1.4 hypothetical protein compare
AO356_07915 -0.7 -1.8 exodeoxyribonuclease V subunit beta compare
AO356_12725 -0.7 -2.9 recombinase XerC compare
AO356_15530 -0.7 -4.9 DEAD/DEAH box helicase compare
AO356_07000 -0.7 -1.6 ABC transporter permease compare
AO356_11990 -0.7 -5.2 DNA helicase II compare
AO356_13590 -0.7 -4.4 DEAD/DEAH box helicase compare
AO356_25580 -0.7 -2.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
AO356_24665 -0.7 -3.4 AAA family ATPase compare
AO356_16080 -0.7 -5.2 ATPase compare
AO356_12515 -0.7 -2.3 exodeoxyribonuclease III compare
AO356_19795 -0.7 -1.9 glycerol-3-phosphate dehydrogenase compare
AO356_26895 -0.7 -1.8 2Fe-2S ferredoxin compare
AO356_26395 -0.6 -1.4 hypothetical protein compare
AO356_07020 -0.6 -0.9 LPS export ABC transporter periplasmic protein LptC compare
AO356_00525 -0.6 -1.2 cobalamin biosynthesis protein CobE compare
AO356_16830 -0.6 -4.2 fumarylacetoacetase compare
AO356_26910 -0.6 -1.8 hypothetical protein compare
AO356_13920 -0.6 -1.7 electron transfer flavoprotein subunit beta compare
AO356_00995 -0.6 -3.0 carbon storage regulator CsrA compare
AO356_02430 -0.6 -2.4 cytochrome C oxidase Cbb3 compare
AO356_24380 -0.6 -2.0 hydroxyacid dehydrogenase compare
AO356_08365 -0.6 -2.6 Urease maturation and nickel insertion protein UreD (from data) compare
AO356_08470 -0.6 -5.1 N-acylglucosamine 2-epimerase compare
AO356_14440 -0.6 -1.8 indole-3-glycerol-phosphate synthase compare
AO356_25865 -0.6 -1.2 peroxidase compare
AO356_25165 -0.6 -2.2 protease compare
AO356_20470 -0.6 -1.1 hypothetical protein compare
AO356_00810 -0.6 -1.0 hypothetical protein compare
AO356_05080 -0.6 -1.0 peptide deformylase compare
AO356_22675 -0.6 -1.1 sulfate transporter compare
AO356_22660 -0.6 -2.0 chemotaxis protein CheW compare
AO356_23595 -0.6 -0.9 short-chain dehydrogenase compare
AO356_16050 -0.6 -1.7 glucose-6-phosphate isomerase compare
AO356_12730 -0.6 -2.0 hypothetical protein compare
AO356_11680 -0.6 -1.7 chromosome partitioning protein ParB compare
AO356_20570 -0.6 -2.3 baseplate assembly protein compare
AO356_22980 -0.6 -1.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO356_09800 -0.6 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_21320 -0.6 -0.9 tRNA-Asn compare
AO356_28315 -0.6 -1.8 hypothetical protein compare
AO356_13485 -0.6 -1.5 chemotaxis protein CheY compare
AO356_24245 -0.6 -1.9 siderophore-iron reductase FhuF compare
AO356_25410 -0.6 -1.9 LysR family transcriptional regulator compare
AO356_18845 -0.6 -2.1 hypothetical protein compare
AO356_10145 -0.6 -1.1 molecular chaperone Hsp33 compare
AO356_12385 -0.6 -3.8 LysR family transcriptional regulator compare
AO356_02250 -0.6 -3.2 pyridine nucleotide-disulfide oxidoreductase compare
AO356_02440 -0.6 -3.3 cytochrome C oxidase Cbb3 compare
AO356_03180 -0.6 -1.8 CysB family transcriptional regulator compare
AO356_28665 -0.6 -1.5 peptide synthetase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in temperature experiments