Experiment set6IT071 for Pseudomonas fluorescens FW300-N2E3

Compare to:

4C survival; 360 hrs

200 most important genes:

  gene name fitness t score description  
AO353_24130 -4.8 -4.7 hypothetical protein compare
AO353_15900 -4.1 -2.8 GTP-binding protein compare
AO353_21625 -3.9 -3.7 Fe/S biogenesis protein NfuA compare
AO353_13100 -3.9 -2.7 GTPase RsgA compare
AO353_13925 -3.8 -2.6 XRE family transcriptional regulator compare
AO353_14220 -3.8 -2.6 ribosomal large subunit pseudouridine synthase D compare
AO353_00825 -3.5 -6.6 porin compare
AO353_19360 -3.3 -4.9 peroxiredoxin compare
AO353_04190 -3.2 -2.2 glycerol-3-phosphate dehydrogenase compare
AO353_00650 -3.0 -3.5 cytochrome biogenesis protein compare
AO353_00495 -3.0 -3.6 DNA topoisomerase I compare
AO353_02860 -2.9 -6.7 flagellar biosynthesis protein FlgB compare
AO353_05130 -2.8 -2.7 anti-anti-sigma factor compare
AO353_07315 -2.8 -3.5 rRNA methyltransferase compare
AO353_15250 -2.8 -4.5 cytochrome B compare
AO353_18785 -2.7 -9.5 flagellar biosynthesis sigma factor compare
AO353_05150 -2.7 -6.5 ABC transporter ATP-binding protein compare
AO353_13200 -2.7 -12.0 exoribonuclease R compare
AO353_18780 -2.6 -8.2 cobyrinic acid a,c-diamide synthase compare
AO353_10950 -2.6 -11.1 thiol:disulfide interchange protein compare
AO353_07355 -2.6 -7.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05690 -2.6 -4.6 SsrA-binding protein compare
AO353_15905 -2.6 -8.4 outer membrane protein assembly factor BamB compare
AO353_13155 -2.6 -4.5 hypothetical protein compare
AO353_05420 -2.5 -2.4 peptide chain release factor 3 compare
AO353_18685 -2.5 -9.5 flagellar motor switch protein FliG compare
AO353_06040 -2.5 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_06585 -2.5 -8.1 hypothetical protein compare
AO353_12090 -2.5 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_03585 -2.5 -4.2 ATP-dependent DNA helicase RuvA compare
AO353_04175 -2.5 -5.6 glycerol uptake facilitator GlpF compare
AO353_18660 -2.5 -10.2 AAA family ATPase compare
AO353_03520 -2.4 -3.9 hypothetical protein compare
AO353_02660 -2.4 -5.5 peptidase P60 compare
AO353_18790 -2.4 -5.0 histidine kinase compare
AO353_13945 -2.4 -6.6 ubiquinol oxidase subunit II compare
AO353_15445 -2.4 -3.9 disulfide bond formation protein B compare
AO353_12345 -2.4 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_20170 -2.3 -6.8 trigger factor compare
AO353_13070 -2.3 -7.9 phosphoserine phosphatase compare
AO353_18600 -2.3 -4.3 flagellar basal-body rod protein FlgG compare
AO353_02885 -2.3 -2.8 flagellar biosynthesis protein FlgN compare
AO353_05135 -2.2 -9.9 toluene tolerance protein compare
AO353_00330 -2.2 -9.3 hypothetical protein compare
AO353_18745 -2.2 -3.3 flagellar biosynthesis protein flip compare
AO353_18610 -2.2 -5.6 flagellar biosynthesis protein FlgI compare
AO353_23325 -2.2 -6.5 hypothetical protein compare
AO353_18650 -2.2 -9.2 flagellar export chaperone FliS compare
AO353_02845 -2.2 -13.8 flagellar biosynthesis protein FlgE compare
AO353_14420 -2.2 -5.9 molecular chaperone DnaK compare
AO353_05145 -2.2 -6.8 ABC transporter permease compare
AO353_13940 -2.1 -7.8 cytochrome D ubiquinol oxidase subunit I compare
AO353_26050 -2.1 -3.4 hypothetical protein compare
AO353_01975 -2.1 -8.8 glycosyl transferase compare
AO353_08115 -2.1 -6.5 energy transducer TonB compare
AO353_28425 -2.1 -4.5 TetR family transcriptional regulator compare
AO353_08510 -2.1 -5.2 3-phosphoglycerate dehydrogenase compare
AO353_18635 -2.0 -9.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_10455 -2.0 -2.7 tRNA modification GTPase MnmE compare
AO353_18675 -2.0 -5.7 flagellar hook-basal body protein FliE compare
AO353_27650 -2.0 -5.2 cell division protein FtsK compare
AO353_18755 -2.0 -5.9 flagellar biosynthetic protein FliR compare
AO353_03580 -2.0 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_20185 -2.0 -7.0 DNA-binding protein compare
AO353_01410 -2.0 -3.4 ribonuclease E compare
AO353_18615 -2.0 -8.0 flagellar biosynthesis protein FlgJ compare
AO353_27720 -2.0 -5.4 cupin compare
AO353_18540 -2.0 -3.2 pseudouridine synthase compare
AO353_18645 -2.0 -11.2 flagellar cap protein FliD compare
AO353_14940 -1.9 -4.2 malate:quinone oxidoreductase compare
AO353_06850 -1.9 -4.2 MFS transporter compare
AO353_22920 -1.9 -5.2 GntR family transcriptional regulator compare
AO353_00635 -1.9 -3.5 hypothetical protein compare
AO353_03590 -1.9 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_12115 -1.9 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_18730 -1.9 -6.5 flagellar motor switch protein FliM compare
AO353_10040 -1.9 -8.3 transcriptional regulator compare
AO353_02570 -1.9 -2.3 hypothetical protein compare
AO353_23590 -1.8 -2.9 ArsR family transcriptional regulator compare
AO353_13160 -1.8 -2.6 membrane protease HflC compare
AO353_12500 -1.8 -2.1 shikimate kinase compare
AO353_10945 -1.8 -3.4 cytochrome C compare
AO353_13640 -1.8 -4.7 histidine kinase compare
AO353_17165 -1.8 -3.6 ATP-dependent helicase compare
AO353_02250 -1.8 -3.9 chorismate synthase compare
AO353_18680 -1.8 -4.5 flagellar M-ring protein FliF compare
AO353_17635 -1.8 -8.1 RNA polymerase subunit sigma compare
AO353_14115 -1.8 -6.8 gamma-glutamyl kinase compare
AO353_06050 -1.8 -7.1 exodeoxyribonuclease V subunit gamma compare
AO353_10780 -1.8 -2.1 DNA-binding protein compare
AO353_08880 -1.8 -2.6 exopolyphosphatase compare
AO353_14395 -1.8 -4.0 poly(A) polymerase compare
AO353_19770 -1.8 -2.4 peptidase compare
AO353_08165 -1.8 -3.3 pyrroline-5-carboxylate reductase compare
AO353_18770 -1.8 -8.4 flagellar biosynthesis protein FlhA compare
AO353_02875 -1.7 -8.0 flagellar biosynthesis protein FlgA compare
AO353_00515 -1.7 -3.4 hypothetical protein compare
AO353_07850 -1.7 -4.1 ATP-dependent RNA helicase compare
AO353_05840 -1.7 -10.2 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_12665 -1.7 -3.2 glycosyl transferase compare
AO353_18800 -1.7 -6.4 chemotaxis protein CheA compare
AO353_14775 -1.7 -5.8 hypothetical protein compare
AO353_02855 -1.7 -6.1 flagellar basal-body rod protein FlgC compare
AO353_06495 -1.7 -4.7 gamma-glutamyl phosphate reductase compare
AO353_19250 -1.7 -2.7 molybdenum cofactor guanylyltransferase compare
AO353_06415 -1.7 -4.6 hypothetical protein compare
AO353_12105 -1.7 -6.8 peptidase S41 compare
AO353_17290 -1.7 -5.7 multidrug transporter compare
AO353_18620 -1.6 -12.1 flagellar biosynthesis protein FlgK compare
AO353_18750 -1.6 -5.4 flagellar biosynthetic protein FliQ compare
AO353_02865 -1.6 -7.7 chemotaxis protein compare
AO353_17645 -1.6 -8.1 peptidase M48 compare
AO353_18605 -1.6 -5.5 flagellar basal body L-ring protein compare
AO353_18425 -1.6 -4.9 hypothetical protein compare
AO353_18595 -1.6 -4.5 flagellar biosynthesis protein FlgF compare
AO353_20370 -1.6 -2.7 MerR family transcriptional regulator compare
AO353_18760 -1.6 -6.8 flagellar biosynthetic protein FlhB compare
AO353_08130 -1.6 -2.4 uracil phosphoribosyltransferase compare
AO353_01355 -1.6 -6.3 3-oxoacyl-ACP synthase compare
AO353_02195 -1.6 -3.7 spermidine synthase compare
AO353_07515 -1.6 -2.0 transporter compare
AO353_09250 -1.6 -2.9 exodeoxyribonuclease III compare
AO353_18625 -1.6 -9.2 flagellar biosynthesis protein FlgL compare
AO353_18720 -1.5 -8.5 flagellar hook-length control protein compare
AO353_13140 -1.5 -5.9 tRNA dimethylallyltransferase compare
AO353_18830 -1.5 -4.5 chemotaxis protein CheW compare
AO353_09000 -1.5 -5.2 argininosuccinate lyase compare
AO353_18690 -1.5 -4.3 flagellar assembly protein FliH compare
AO353_14740 -1.5 -4.1 GTP-binding protein compare
AO353_14400 -1.5 -4.0 Fis family transcriptional regulator compare
AO353_18695 -1.5 -6.5 flagellar protein export ATPase FliI compare
AO353_29270 -1.5 -3.2 type VI secretion system protein compare
AO353_18890 -1.5 -4.1 cytochrome C compare
AO353_21440 -1.5 -2.7 hypothetical protein compare
AO353_16415 -1.5 -7.9 beta-(1-3)-glucosyl transferase compare
AO353_11170 -1.5 -8.1 hypothetical protein compare
AO353_08980 -1.5 -3.3 heme biosynthesis operon protein HemX compare
AO353_26090 -1.5 -2.3 hypothetical protein compare
AO353_19145 -1.5 -2.7 protease HtpX compare
AO353_18725 -1.5 -6.2 flagellar basal body protein FliL compare
AO353_12690 -1.5 -1.2 acyl carrier protein compare
AO353_15185 -1.5 -4.2 ATPase compare
AO353_12015 -1.5 -1.6 antitoxin compare
AO353_17025 -1.4 -8.8 beta-agarase compare
AO353_02060 -1.4 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_06045 -1.4 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_03615 -1.4 -3.5 cold-shock protein compare
AO353_14150 -1.4 -1.9 peptidylprolyl isomerase compare
AO353_15885 -1.4 -3.3 Cro/Cl family transcriptional regulator compare
AO353_11730 -1.4 -8.0 glutamate--cysteine ligase compare
AO353_01645 -1.4 -4.5 hypothetical protein compare
AO353_04180 -1.4 -6.6 glycerol kinase compare
AO353_18285 -1.4 -3.1 3-phosphoglycerate kinase compare
AO353_11180 -1.4 -10.9 large adhesive protein compare
AO353_27585 -1.3 -1.9 DNA repair protein compare
AO353_05140 -1.3 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_00430 -1.3 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02480 -1.3 -5.4 peptidylprolyl isomerase compare
AO353_00510 -1.3 -4.1 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_06455 -1.3 -2.3 D-alanyl-D-alanine carboxypeptidase compare
AO353_15170 -1.3 -2.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_11770 -1.3 -2.0 molecular chaperone Hsp33 compare
AO353_22855 -1.3 -3.0 hypothetical protein compare
AO353_13865 -1.3 -2.0 hypothetical protein compare
AO353_16940 -1.3 -4.6 deoxycytidine triphosphate deaminase compare
AO353_11190 -1.3 -6.7 ABC transporter compare
AO353_10825 -1.3 -8.3 hypothetical protein compare
AO353_20510 -1.3 -2.1 amidase compare
AO353_18715 -1.3 -2.0 histidine kinase compare
AO353_00620 -1.3 -1.9 cytochrome C oxidase Cbb3 compare
AO353_11185 -1.3 -7.9 channel protein TolC compare
AO353_18775 -1.3 -4.9 flagellar biosynthesis protein FlhF compare
AO353_06155 -1.3 -5.2 copper-transporting ATPase compare
AO353_09890 -1.3 -3.2 phosphate ABC transporter ATP-binding protein compare
AO353_02600 -1.3 -1.3 alpha-ribazole phosphatase compare
AO353_10445 -1.3 -1.9 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_04105 -1.2 -6.5 argininosuccinate synthase compare
AO353_02015 -1.2 -5.0 acetyltransferase compare
AO353_26550 -1.2 -1.4 hypothetical protein compare
AO353_12270 -1.2 -2.8 histidine ammonia-lyase compare
AO353_19280 -1.2 -2.5 hypothetical protein compare
AO353_03605 -1.2 -1.1 FmdB family transcriptional regulator compare
AO353_18665 -1.2 -5.4 histidine kinase compare
AO353_18655 -1.2 -3.5 flagellar assembly protein FliT compare
AO353_05425 -1.2 -4.2 glycine/betaine ABC transporter permease compare
AO353_16805 -1.2 -4.7 recombinase RecA compare
AO353_23785 -1.2 -1.8 hypothetical protein compare
AO353_17295 -1.2 -8.5 multidrug transporter compare
AO353_05625 -1.2 -1.1 transcription elongation factor GreA compare
AO353_05240 -1.2 -1.9 rod shape-determining protein MreD compare
AO353_04240 -1.2 -1.9 chemotaxis protein CheW compare
AO353_22860 -1.2 -5.4 cytochrome C oxidase Cbb3 compare
AO353_17435 -1.2 -4.0 hypothetical protein compare
AO353_17955 -1.2 -5.0 MFS transporter compare
AO353_29145 -1.2 -3.4 HxlR family transcriptional regulator compare
AO353_09240 -1.2 -2.5 acetylglutamate kinase compare
AO353_06720 -1.2 -2.1 NrdR family transcriptional regulator compare
AO353_08685 -1.2 -5.9 N-acetylglutamate synthase compare
AO353_11195 -1.2 -7.6 hemolysin secretion protein D compare
AO353_12420 -1.2 -2.7 predicted FeS cluster maintenance protein (from data) compare


Specific Phenotypes

For 35 genes in this experiment