Experiment set6IT071 for Rhodospirillum rubrum S1H

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Succinic Acid; Light intensity 150 uM

200 most important genes:

  gene name fitness t score description  
Rru_A2574 -2.5 -0.9 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A1771 -2.0 -1.1 Sec-independent periplasmic protein translocase (NCBI) compare
Rru_A2501 -1.6 -1.7 conserved hypothetical cytosolic protein (NCBI) compare
Rru_A0700 -1.4 -0.7 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A2303 -1.4 -0.9 Deoxyribose-phosphate aldolase (NCBI) compare
Rru_A3149 -1.3 -1.1 Protein of unknown function DUF214 (NCBI) compare
Rru_A1786 -1.2 -9.6 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A3594 -1.2 -1.2 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A2424 -1.2 -1.7 Gamma-glutamyltranspeptidase (NCBI) compare
Rru_A3425 -1.2 -4.6 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A3693 -1.1 -1.5 Protein of unknown function UPF0011 (NCBI) compare
Rru_A3451 -1.1 -1.2 hypothetical protein (NCBI) compare
Rru_A0834 -1.1 -2.6 Protein of unknown function DUF196 (NCBI) compare
Rru_A1530 -1.1 -6.6 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A1189 -1.1 -4.7 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A3428 -1.0 -7.2 Tryptophan synthase (NCBI) compare
Rru_A0397 -1.0 -3.5 Argininosuccinate lyase (NCBI) compare
Rru_A3640 -1.0 -0.4 Ham1-like protein (NCBI) compare
Rru_A0617 -1.0 -1.6 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_B0038 -1.0 -0.6 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI) compare
Rru_A3362 -0.9 -2.6 Uroporphyrin-III C-methyltransferase-like (NCBI) compare
Rru_A1000 -0.9 -3.2 hypothetical protein (NCBI) compare
Rru_A1900 -0.9 -1.3 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A0469 -0.9 -4.5 Ketol-acid reductoisomerase (NCBI) compare
Rru_A3019 -0.9 -0.8 hypothetical protein (NCBI) compare
Rru_A3426 -0.9 -6.8 hypothetical protein (NCBI) compare
Rru_A0485 -0.9 -1.0 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A1393 -0.8 -1.8 Nitrogenase (NCBI) compare
Rru_A1265 -0.8 -1.6 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A1618 -0.8 -1.6 hypothetical protein (NCBI) compare
Rru_A0670 -0.8 -0.8 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A1179 -0.8 -0.4 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A3268 -0.8 -0.7 hypothetical protein (NCBI) compare
Rru_A1031 -0.8 -1.8 Ethanolamine ammonia-lyase (NCBI) compare
Rru_A3548 -0.8 -3.8 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A0225 -0.8 -1.7 Metal dependent phosphohydrolase, HD region (NCBI) compare
Rru_A2729 -0.8 -1.4 hypothetical protein (NCBI) compare
Rru_A1928 -0.8 -5.2 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A3227 -0.8 -3.4 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A2400 -0.8 -5.0 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A1027 -0.8 -4.3 (Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase (NCBI) compare
Rru_A3344 -0.8 -1.7 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A0605 -0.8 -2.8 hypothetical protein (NCBI) compare
Rru_A2985 -0.8 -3.9 Hydroxyneurosporene synthase (NCBI) compare
Rru_A1258 -0.8 -1.1 hypothetical protein (NCBI) compare
Rru_A1545 -0.8 -2.2 Putative diguanylate cyclase (GGDEF domain) (NCBI) compare
Rru_A0424 -0.7 -1.5 hypothetical protein (NCBI) compare
Rru_A1827 -0.7 -3.5 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A1491 -0.7 -0.7 hypothetical protein (NCBI) compare
Rru_A1147 -0.7 -1.2 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A3602 -0.7 -1.2 Smr protein/MutS2-like (NCBI) compare
Rru_A2403 -0.7 -4.8 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A1352 -0.7 -0.6 hypothetical protein (NCBI) compare
Rru_A0963 -0.7 -1.6 MifU-like protein, Fe-S cluster formation (NCBI) compare
Rru_A1216 -0.7 -1.7 hypothetical protein (NCBI) compare
Rru_A2974 -0.7 -2.5 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A2404 -0.7 -3.7 Phosphoribulokinase (NCBI) compare
Rru_A0467 -0.7 -4.4 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_AR0042 -0.7 -1.9 5S ribosomal RNA (NCBI) compare
Rru_A1131 -0.7 -3.5 Aminotransferase, class IV (NCBI) compare
Rru_A3581 -0.7 -2.1 Transcriptional coactivator/pterin dehydratase (NCBI) compare
Rru_A2713 -0.7 -1.5 hypothetical protein (NCBI) compare
Rru_A2451 -0.7 -2.2 Putative diguanylate cyclase (GGDEF domain) (NCBI) compare
Rru_A2861 -0.7 -1.4 hypothetical protein (NCBI) compare
Rru_A3466 -0.7 -3.2 Ornithine aminotransferase (NCBI) compare
Rru_A0922 -0.7 -0.7 Protein of unknown function DUF1044 (NCBI) compare
Rru_A1209 -0.7 -1.1 Chromate transporter (NCBI) compare
Rru_A2762 -0.7 -2.2 hypothetical protein (NCBI) compare
Rru_A3264 -0.7 -2.5 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3427 -0.7 -5.0 Tryptophan synthase, beta chain (NCBI) compare
Rru_A0622 -0.6 -2.6 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A2978 -0.6 -2.2 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A2418 -0.6 -3.1 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A2055 -0.6 -0.8 Peptidase S49 (NCBI) compare
Rru_A2833 -0.6 -1.5 hypothetical protein (NCBI) compare
Rru_A3057 -0.6 -2.1 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (NCBI) compare
Rru_A1907 -0.6 -2.1 Protein-methionine-S-oxide reductase (NCBI) compare
Rru_A3742 -0.6 -0.9 CBS (NCBI) compare
Rru_A1736 -0.6 -2.0 hypothetical protein (NCBI) compare
Rru_A3164 -0.6 -0.6 hypothetical protein (NCBI) compare
Rru_A0395 -0.6 -3.2 PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI) compare
Rru_A1797 -0.6 -2.3 hypothetical protein (NCBI) compare
Rru_A2799 -0.6 -1.0 hypothetical protein (NCBI) compare
Rru_A3119 -0.6 -1.9 ATPases involved in chromosome partitioning-like (NCBI) compare
Rru_A2596 -0.6 -1.7 Protein of unknown function DUF1212 (NCBI) compare
Rru_A1424 -0.6 -1.4 NADH dehydrogenase (ubiquinone), 30 kDa subunit (NCBI) compare
Rru_A3335 -0.6 -1.4 Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI) compare
Rru_A3552 -0.6 -1.2 hypothetical protein (NCBI) compare
Rru_A2190 -0.6 -1.5 TRm3 transposase (NCBI) compare
Rru_A3309 -0.6 -1.6 Sulfotransferase (NCBI) compare
Rru_A0282 -0.6 -2.3 Protein of unknown function DUF204 (NCBI) compare
Rru_A0239 -0.6 -2.1 hypothetical protein (NCBI) compare
Rru_A1969 -0.6 -1.2 Esterase, PHB depolymerase (NCBI) compare
Rru_A3651 -0.6 -2.4 ABC transporter component (NCBI) compare
Rru_A0220 -0.6 -1.3 hypothetical protein (NCBI) compare
Rru_A1371 -0.5 -1.4 hypothetical protein (NCBI) compare
Rru_A0067 -0.5 -2.8 Protein of unknown function DUF123 (NCBI) compare
Rru_A2193 -0.5 -3.2 Abc1 protein (NCBI) compare
Rru_A3398 -0.5 -1.2 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A0270 -0.5 -2.6 Protein of unknown function DUF525 (NCBI) compare
Rru_A1721 -0.5 -1.9 Isochorismatase hydrolase (NCBI) compare
Rru_A0023 -0.5 -0.3 hypothetical protein (NCBI) compare
Rru_A0821 -0.5 -2.3 hypothetical protein (NCBI) compare
Rru_A1896 -0.5 -2.3 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A0352 -0.5 -3.3 RepA (NCBI) compare
Rru_A3334 -0.5 -2.6 Putative ammonia monooxygenase (NCBI) compare
Rru_A0187 -0.5 -2.0 hypothetical protein (NCBI) compare
Rru_A2872 -0.5 -1.2 L-2-amino-thiazoline-4-carboxylic acid hydrolase (NCBI) compare
Rru_A0796 -0.5 -0.8 Radical SAM (NCBI) compare
Rru_A0219 -0.5 -3.1 hypothetical protein (NCBI) compare
Rru_AR0013 -0.5 -1.1 tRNA-Ala (NCBI) compare
Rru_A2282 -0.5 -1.5 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) compare
Rru_A1400 -0.5 -2.2 CheW protein (NCBI) compare
Rru_A3622 -0.5 -3.4 Protein of unknown function DUF255 (NCBI) compare
Rru_A1007 -0.5 -1.4 Nitrogenase-associated protein (NCBI) compare
Rru_A0620 -0.5 -1.3 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A2034 -0.5 -4.3 Phosphate transporter (NCBI) compare
Rru_A2979 -0.5 -1.6 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A3603 -0.5 -1.3 Protein of unknown function DUF162 (NCBI) compare
Rru_A1610 -0.5 -1.8 hypothetical protein (NCBI) compare
Rru_A3065 -0.5 -1.1 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A1518 -0.5 -0.7 hypothetical protein (NCBI) compare
Rru_A3297 -0.5 -1.8 hypothetical protein (NCBI) compare
Rru_A2538 -0.5 -1.4 hypothetical protein (NCBI) compare
Rru_A1040 -0.5 -2.9 Glu/Leu/Phe/Val dehydrogenase (NCBI) compare
Rru_A2478 -0.5 -1.6 ArgK protein (NCBI) compare
Rru_A0722 -0.5 -1.5 Sigma-24 (FecI) (NCBI) compare
Rru_A3580 -0.5 -2.5 Protein of unknown function DUF6, transmembrane (NCBI) compare
Rru_A3157 -0.5 -1.6 hypothetical protein (NCBI) compare
Rru_A2856 -0.5 -2.4 putative flagellar protein FlaF (NCBI) compare
Rru_A2195 -0.5 -1.3 Bacterioferritin (NCBI) compare
Rru_A3368 -0.5 -0.8 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A0696 -0.5 -0.7 RNA methyltransferase TrmH, group 1 (NCBI) compare
Rru_A3184 -0.5 -0.9 hypothetical protein (NCBI) compare
Rru_A0585 -0.5 -0.7 ABC transporter component (NCBI) compare
Rru_A2428 -0.5 -2.1 DSBA oxidoreductase (NCBI) compare
Rru_A2960 -0.5 -1.8 no description compare
Rru_A2083 -0.5 -2.1 CreA (NCBI) compare
Rru_A3441 -0.5 -1.6 Transcriptional Regulator, PadR-like family (NCBI) compare
Rru_A0421 -0.5 -1.0 hypothetical protein (NCBI) compare
Rru_A0350 -0.5 -1.7 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A2524 -0.5 -2.8 Peptidase U32 (NCBI) compare
Rru_A1529 -0.5 -3.3 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A1695 -0.5 -2.3 Protein of unknown function DUF411 (NCBI) compare
Rru_A2824 -0.5 -2.1 Flagellar hook-basal body complex protein FliE (NCBI) compare
Rru_A2388 -0.5 -1.9 ABC-3 transporter component (NCBI) compare
Rru_A3060 -0.5 -1.1 hypothetical protein (NCBI) compare
Rru_A1052 -0.5 -2.1 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A0243 -0.4 -2.1 tRNA/rRNA cytosine-C5-methylase (NCBI) compare
Rru_A0998 -0.4 -1.6 NifT/FixU (NCBI) compare
Rru_A2207 -0.4 -1.7 hypothetical protein (NCBI) compare
Rru_A2000 -0.4 -0.9 hypothetical protein (NCBI) compare
Rru_A0367 -0.4 -2.6 NUDIX hydrolase (NCBI) compare
Rru_A1055 -0.4 -1.1 Protein of unknown function DUF1013 (NCBI) compare
Rru_A3074 -0.4 -1.8 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like (NCBI) compare
Rru_A3120 -0.4 -1.9 hypothetical protein (NCBI) compare
Rru_A0121 -0.4 -1.9 hypothetical protein (NCBI) compare
Rru_A1194 -0.4 -0.8 Protein of unknown function DUF134 (NCBI) compare
Rru_A2405 -0.4 -2.1 transketolase (NCBI) compare
Rru_A1337 -0.4 -1.4 ABC transporter component (NCBI) compare
Rru_A1532 -0.4 -1.5 TPR repeat (NCBI) compare
Rru_A0082 -0.4 -2.3 chemotaxis sensory transducer (NCBI) compare
Rru_A0298 -0.4 -2.2 Aldehyde dehydrogenase (NAD+) (NCBI) compare
Rru_A2803 -0.4 -1.0 putative thioredoxin (NCBI) compare
Rru_A2095 -0.4 -1.4 Secretion protein HlyD (NCBI) compare
Rru_A0854 -0.4 -1.2 Sulfotransferase (NCBI) compare
Rru_A2351 -0.4 -2.3 Macrocin-O-methyltransferase (NCBI) compare
Rru_A2463 -0.4 -1.8 N-formylglutamate amidohydrolase (NCBI) compare
Rru_A3575 -0.4 -3.4 Acetate--CoA ligase (NCBI) compare
Rru_A1847 -0.4 -2.8 Transglutaminase-like (NCBI) compare
Rru_A2272 -0.4 -1.5 TspO and MBR related proteins (NCBI) compare
Rru_A0823 -0.4 -2.3 Cupin region (NCBI) compare
Rru_A2444 -0.4 -1.4 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A3221 -0.4 -0.3 hypothetical protein (NCBI) compare
Rru_A1788 -0.4 -1.1 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A3682 -0.4 -1.2 Cytochrome B561 (NCBI) compare
Rru_A2975 -0.4 -1.4 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A0095 -0.4 -2.2 ABC transporter component (NCBI) compare
Rru_A3634 -0.4 -0.5 Protein of unknown function UPF0001 (NCBI) compare
Rru_A0164 -0.4 -2.3 Sulfate transporter/antisigma-factor antagonist (NCBI) compare
Rru_A2858 -0.4 -2.4 Flagellin-like (NCBI) compare
Rru_A1313 -0.4 -3.6 Membrane protein involved in aromatic hydrocarbon degradation (NCBI) compare
Rru_A2780 -0.4 -1.1 hypothetical protein (NCBI) compare
Rru_A1126 -0.4 -0.9 ISBm1, transposase orfA (NCBI) compare
Rru_A2758 -0.4 -1.0 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A1432 -0.4 -2.1 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A1475 -0.4 -1.7 Citrate transporter (NCBI) compare
Rru_A1167 -0.4 -0.4 putative hydrogenase expression/formation protein HupK (NCBI) compare
Rru_A1845 -0.4 -2.0 Arginyltransferase (NCBI) compare
Rru_A3226 -0.4 -2.5 putative enoyl-acyl carrier protein reductase (NCBI) compare
Rru_A0657 -0.4 -0.6 Lysine exporter protein (LYSE/YGGA) (NCBI) compare
Rru_A3005 -0.4 -2.0 Rubredoxin-type Fe(Cys)4 protein (NCBI) compare
Rru_A1938 -0.4 -1.4 Protein of unknown function DUF519 (NCBI) compare
Rru_A1038 -0.4 -1.7 Patatin (NCBI) compare
Rru_A3710 -0.4 -2.2 Peptidase S16, lon-like (NCBI) compare
Rru_A0645 -0.4 -0.3 Ribose-phosphate pyrophosphokinase (NCBI) compare
Rru_A1734 -0.4 -1.8 hypothetical protein (NCBI) compare
Rru_A1922 -0.4 -1.5 DSBA oxidoreductase (NCBI) compare
Rru_A2525 -0.4 -2.3 Peptidase U32 (NCBI) compare
Rru_A0624 -0.4 -1.2 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in light experiments

For light Succinic Acid across organisms