Experiment set6IT071 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 2g/L casamino acids

200 most important genes:

  gene name fitness t score description  
MMP_RS08435 -5.6 -3.5 Era-like GTP-binding protein compare
MMP_RS07845 -5.1 -3.6 LL-diaminopimelate aminotransferase compare
MMP_RS06285 -4.9 -4.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03315 -4.8 -1.9 ferrous iron transport protein A compare
MMP_RS05515 -4.7 -13.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03015 -4.7 -16.3 GTP 3' 8-cyclase MoaA compare
MMP_RS06355 -4.4 -4.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05920 -4.3 -1.0 50S ribosomal protein L37e compare
MMP_RS01175 -4.2 -8.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08720 -4.1 -2.8 4Fe-4S binding protein compare
MMP_RS04710 -4.0 -2.9 hypothetical protein compare
MMP_RS06400 -3.8 -2.9 4Fe-4S binding protein compare
MMP_RS06350 -3.8 -12.0 HesA/MoeB/ThiF family protein compare
MMP_RS02010 -3.7 -15.4 PHP domain-containing protein compare
MMP_RS02195 -3.7 -3.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07635 -3.6 -11.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07630 -3.5 -2.7 ATP-binding cassette domain-containing protein compare
MMP_RS09020 -3.5 -2.8 hypothetical protein compare
MMP_RS06475 -3.5 -7.3 FAD-dependent oxidoreductase compare
MMP_RS07755 -3.5 -1.9 DUF555 domain-containing protein compare
MMP_RS06295 -3.4 -9.0 methanogenesis marker 14 protein compare
MMP_RS08460 -3.4 -4.2 proteasome-activating nucleotidase compare
MMP_RS01795 -3.3 -2.7 methanogenesis marker 6 protein compare
MMP_RS06730 -3.3 -2.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS01500 -3.2 -4.1 CBS domain-containing protein compare
MMP_RS01005 -3.2 -2.0 riboflavin synthase compare
MMP_RS01755 -3.2 -2.2 DUF2097 domain-containing protein compare
MMP_RS05845 -3.2 -3.1 tRNA-intron lyase compare
MMP_RS01830 -3.2 -3.0 tRNA-Val compare
MMP_RS00040 -3.2 -6.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS07435 -3.2 -2.9 GMP synthase subunit A compare
MMP_RS02280 -3.1 -1.6 DUF211 domain-containing protein compare
MMP_RS01220 -3.1 -10.5 hypothetical protein compare
MMP_RS04500 -3.1 -20.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01610 -3.0 -5.3 hypothetical protein compare
MMP_RS02800 -3.0 -9.2 nucleotidyltransferase domain-containing protein compare
MMP_RS08300 -3.0 -2.2 metal-sulfur cluster assembly factor compare
MMP_RS01020 -3.0 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03035 -3.0 -5.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07730 -3.0 -3.5 pyruvate synthase subunit beta compare
MMP_RS03400 -3.0 -4.1 archease compare
MMP_RS00110 -2.9 -4.7 hypothetical protein compare
MMP_RS00300 -2.9 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS08715 -2.9 -2.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02240 -2.9 -5.2 methanogenesis marker 7 protein compare
MMP_RS01325 -2.9 -3.0 dihydroneopterin aldolase family protein compare
MMP_RS06020 -2.8 -7.4 archaeoflavoprotein AfpA compare
MMP_RS04685 -2.8 -4.2 DUF126 domain-containing protein compare
MMP_RS07600 -2.8 -3.7 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02145 -2.7 -8.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS03025 -2.7 -6.7 molybdenum cofactor guanylyltransferase compare
MMP_RS08650 -2.7 -4.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03435 -2.7 -2.3 ketol-acid reductoisomerase compare
MMP_RS06625 -2.7 -3.0 DNA primase compare
MMP_RS04780 -2.7 -4.6 ribonuclease P compare
MMP_RS01265 -2.7 -2.3 hypothetical protein compare
MMP_RS03600 -2.6 -3.6 triose-phosphate isomerase compare
MMP_RS07005 -2.6 -1.0 4Fe-4S binding protein compare
MMP_RS03445 -2.6 -1.6 methanogenesis marker 17 protein compare
MMP_RS06270 -2.6 -7.2 TIGR00300 family protein compare
MMP_RS01225 -2.6 -7.5 DUF5379 domain-containing protein compare
MMP_RS08820 -2.5 -7.7 hypothetical protein compare
MMP_RS02900 -2.4 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08105 -2.4 -9.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS08095 -2.4 -8.5 dethiobiotin synthase compare
MMP_RS02345 -2.4 -4.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08100 -2.4 -8.4 8-amino-7-oxononanoate synthase compare
MMP_RS06925 -2.4 -4.0 ribonuclease VapC4 compare
MMP_RS03475 -2.4 -1.0 hypothetical protein compare
MMP_RS01800 -2.4 -3.8 TIGR00303 family protein compare
MMP_RS01545 -2.3 -1.7 CBS domain-containing protein compare
MMP_RS07380 -2.3 -3.4 transcription elongation factor Spt5 compare
MMP_RS06370 -2.3 -8.0 biotin synthase BioB compare
MMP_RS06885 -2.3 -4.4 50S ribosome-binding GTPase compare
MMP_RS06630 -2.3 -1.6 UPF0058 family protein compare
MMP_RS08790 -2.3 -2.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS00895 -2.3 -5.5 hypothetical protein compare
MMP_RS00685 -2.3 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06120 -2.2 -3.0 UPF0147 family protein compare
MMP_RS08745 -2.2 -6.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07750 -2.2 -5.1 DUF357 domain-containing protein compare
MMP_RS03700 -2.2 -10.0 sodium:proton antiporter compare
MMP_RS03580 -2.2 -6.5 signal recognition particle-docking protein FtsY compare
MMP_RS03095 -2.2 -8.3 diphthine synthase compare
MMP_RS07355 -2.2 -1.6 transcription factor S compare
MMP_RS05550 -2.1 -1.1 cation:proton antiporter compare
MMP_RS07545 -2.1 -1.8 HTH domain-containing protein compare
MMP_RS01700 -2.1 -1.4 dihydroxy-acid dehydratase compare
MMP_RS08440 -2.1 -3.1 cell division protein SepF compare
MMP_RS03640 -2.1 -4.9 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS04605 -2.0 -4.1 cobalt ECF transporter T component CbiQ compare
MMP_RS00305 -2.0 -2.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS04900 -2.0 -16.0 hypothetical protein compare
MMP_RS00810 -2.0 -9.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08210 -2.0 -3.4 phosphatidylglycerophosphatase A compare
MMP_RS01840 -2.0 -9.2 TIGR00289 family protein compare
MMP_RS07735 -2.0 -1.3 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05925 -2.0 -4.6 small nuclear ribonucleoprotein compare
MMP_RS07605 -2.0 -4.5 diadenylate cyclase compare
MMP_RS01725 -2.0 -3.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS07390 -2.0 -3.2 cell division protein FtsZ compare
MMP_RS08635 -1.9 -2.5 UbiA family prenyltransferase compare
MMP_RS05345 -1.9 -7.5 hypothetical protein compare
MMP_RS04585 -1.9 -10.9 AIR synthase related protein compare
MMP_RS07200 -1.9 -7.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS06975 -1.9 -3.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS04615 -1.9 -4.0 PDGLE domain-containing protein compare
MMP_RS00515 -1.9 -1.4 DUF655 domain-containing protein compare
MMP_RS06130 -1.9 -3.7 peptidylprolyl isomerase compare
MMP_RS08785 -1.9 -1.4 RNA-protein complex protein Nop10 compare
MMP_RS01365 -1.9 -2.6 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS05540 -1.9 -2.2 hypothetical protein compare
MMP_RS04775 -1.8 -3.8 adenosylhomocysteinase compare
MMP_RS07645 -1.8 -7.0 aldehyde dehydrogenase family protein compare
MMP_RS05815 -1.8 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06980 -1.8 -6.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS05555 -1.8 -2.2 DUF4040 domain-containing protein compare
MMP_RS07195 -1.8 -10.1 M20 family metallo-hydrolase compare
MMP_RS02135 -1.8 -4.8 DUF5612 domain-containing protein compare
MMP_RS05245 -1.8 -8.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS06340 -1.7 -8.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06105 -1.7 -9.9 hydrogenase maturation peptidase HycI compare
MMP_RS00915 -1.7 -8.0 DUF116 domain-containing protein compare
MMP_RS02875 -1.7 -10.7 chorismate pyruvate-lyase family protein compare
MMP_RS07090 -1.7 -8.2 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06840 -1.7 -1.2 DNA-directed RNA polymerase subunit N compare
MMP_RS06895 -1.7 -2.1 selenocysteine-specific translation elongation factor compare
MMP_RS00115 -1.7 -9.6 radical SAM protein compare
MMP_RS04870 -1.7 -5.4 TIGR02253 family HAD-type hydrolase compare
MMP_RS02355 -1.6 -4.4 30S ribosomal protein S27ae compare
MMP_RS07420 -1.6 -5.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS04890 -1.6 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00985 -1.6 -5.6 CDC48 family AAA ATPase compare
MMP_RS03140 -1.6 -9.7 hypothetical protein compare
MMP_RS01380 -1.6 -5.2 PHP domain-containing protein compare
MMP_RS07710 -1.6 -7.1 cell division protein FtsZ compare
MMP_RS06865 -1.5 -1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS01885 -1.5 -6.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07705 -1.5 -8.5 transcriptional regulator compare
MMP_RS00130 -1.5 -1.6 nickel-responsive transcriptional regulator NikR compare
MMP_RS06900 -1.5 -3.7 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS03155 -1.5 -7.3 precorrin-6A reductase compare
MMP_RS05425 -1.5 -5.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03485 -1.5 -4.1 TIGR00267 family protein compare
MMP_RS03145 -1.5 -6.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS00900 -1.5 -2.4 50S ribosomal protein L39e compare
MMP_RS06215 -1.5 -3.7 30S ribosomal protein S6e compare
MMP_RS01890 -1.5 -3.9 nucleotide sugar dehydrogenase compare
MMP_RS01665 -1.5 -3.9 DUF2111 domain-containing protein compare
MMP_RS07860 -1.5 -1.1 hypothetical protein compare
MMP_RS04720 -1.5 -2.8 DedA family protein compare
MMP_RS00050 -1.5 -7.2 AarF/UbiB family protein compare
MMP_RS03205 -1.4 -1.6 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS05635 -1.4 -6.7 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS07525 -1.4 -6.6 4Fe-4S binding protein compare
MMP_RS06230 -1.4 -2.9 helix-turn-helix domain-containing protein compare
MMP_RS02245 -1.4 -3.0 hypothetical protein compare
MMP_RS00675 -1.4 -1.3 nitroreductase family protein compare
MMP_RS07540 -1.4 -3.9 CBS domain-containing protein compare
MMP_RS04955 -1.4 -4.8 DNA topoisomerase I compare
MMP_RS00325 -1.4 -1.7 RNA-binding protein compare
MMP_RS08330 -1.4 -5.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS01385 -1.3 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05850 -1.3 -5.1 Ldh family oxidoreductase compare
MMP_RS05580 -1.3 -9.9 glycosyltransferase compare
MMP_RS05250 -1.3 -1.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07075 -1.3 -2.4 phosphomannomutase/phosphoglucomutase compare
MMP_RS01600 -1.3 -2.4 50S ribosomal protein L15e compare
MMP_RS07580 -1.3 -2.6 DUF356 domain-containing protein compare
MMP_RS06940 -1.3 -2.9 polyprenyl diphosphate synthase compare
MMP_RS01045 -1.3 -5.6 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS06035 -1.2 -7.3 glycosyltransferase family 2 protein compare
MMP_RS08595 -1.2 -1.2 flagellar protein C compare
MMP_RS07820 -1.2 -5.1 UPF0104 family protein compare
MMP_RS07330 -1.2 -9.7 membrane protein compare
MMP_RS08915 -1.2 -3.1 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS05440 -1.2 -6.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS02235 -1.2 -6.5 CBS domain-containing protein compare
MMP_RS02165 -1.2 -6.3 tRNA-dihydrouridine synthase compare
MMP_RS04620 -1.1 -5.4 cobalt transporter CbiM compare
MMP_RS03080 -1.1 -2.2 universal stress protein compare
MMP_RS03250 -1.1 -2.1 MJ1244 family protein compare
MMP_RS05525 -1.1 -4.8 calcium/sodium antiporter compare
MMP_RS06315 -1.1 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06670 -1.1 -3.6 glucose-6-phosphate isomerase compare
MMP_RS07425 -1.1 -5.1 GTP-binding protein compare
MMP_RS01240 -1.1 -1.2 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS05800 -1.1 -5.9 B12-binding domain-containing radical SAM protein compare
MMP_RS07625 -1.1 -2.7 cobalt ECF transporter T component CbiQ compare
MMP_RS01030 -1.1 -2.9 MTAP family purine nucleoside phosphorylase compare
MMP_RS04695 -1.1 -5.8 selenide water dikinase SelD compare
MMP_RS00720 -1.1 -4.9 metal-dependent hydrolase compare
MMP_RS05640 -1.1 -3.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05430 -1.0 -3.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS00320 -1.0 -1.1 class I SAM-dependent methyltransferase compare
MMP_RS05295 -1.0 -5.7 minichromosome maintenance protein MCM compare
MMP_RS02480 -1.0 -2.6 hypothetical protein compare
MMP_RS00555 -1.0 -3.9 MFS transporter compare
MMP_RS08195 -1.0 -5.5 hypothetical protein compare
MMP_RS05950 -1.0 -6.4 nickel-dependent hydrogenase large subunit compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source casamino acids in Methanococcus maripaludis S2

For nitrogen source casamino acids across organisms