Experiment set6IT071 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 2g/L casamino acids

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS08725 +2.1 1.5 Ni/Fe hydrogenase subunit alpha compare
MMP_RS06300 +1.8 5.4 ABC transporter substrate-binding protein compare
MMP_RS08580 +1.8 2.4 flagellin compare
MMP_RS08850 +1.5 10.5 hypothetical protein compare
MMP_RS02805 +1.5 2.5 HEPN domain-containing protein compare
MMP_RS08845 +1.3 4.8 archaellum operon transcriptional activator EarA family protein compare
MMP_RS01945 +1.3 5.3 DUF4350 domain-containing protein compare
MMP_RS05975 +1.3 2.8 hypothetical protein compare
MMP_RS07815 +1.1 2.0 DUF2120 domain-containing protein compare
MMP_RS01940 +1.1 3.3 MoxR family ATPase compare
MMP_RS02290 +1.0 5.0 MBL fold metallo-hydrolase compare
MMP_RS08585 +1.0 2.4 flagellin compare
MMP_RS02595 +1.0 2.0 putative zinc-binding protein compare
MMP_RS00655 +0.9 3.4 hypothetical protein compare
MMP_RS01915 +0.9 3.9 DUF354 domain-containing protein compare
MMP_RS00980 +0.9 4.7 hypothetical protein compare
MMP_RS01525 +0.8 2.0 nucleoside-diphosphate kinase compare
MMP_RS04945 +0.8 2.3 hypothetical protein compare
MMP_RS00185 +0.8 5.8 potassium channel protein compare
MMP_RS01930 +0.8 4.2 hypothetical protein compare
MMP_RS07890 +0.8 1.9 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS01910 +0.8 3.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS05970 +0.7 2.4 class II SORL domain-containing protein compare
MMP_RS01675 +0.7 1.6 hypothetical protein compare
MMP_RS01935 +0.7 3.1 DUF58 domain-containing protein compare
MMP_RS07915 +0.7 2.6 DUF4870 domain-containing protein compare
MMP_RS03740 +0.7 3.4 indolepyruvate oxidoreductase subunit beta compare
MMP_RS03965 +0.7 2.0 hypothetical protein compare
MMP_RS05985 +0.7 2.4 hypothetical protein compare
MMP_RS08670 +0.7 2.3 metallophosphoesterase compare
MMP_RS01055 +0.7 2.6 hypothetical protein compare
MMP_RS08640 +0.7 3.2 TIM barrel protein compare
MMP_RS08310 +0.6 1.6 TMEM165/GDT1 family protein compare
MMP_RS08930 +0.6 1.0 hypothetical protein compare
MMP_RS08160 +0.6 3.3 EamA family transporter compare
MMP_RS06710 +0.6 2.9 selenium-binding protein compare
MMP_RS03390 +0.6 3.1 malate dehydrogenase compare
MMP_RS00450 +0.6 1.3 4Fe-4S binding protein compare
MMP_RS08480 +0.6 3.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS02605 +0.6 0.8 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS01115 +0.6 2.5 molybdopterin molybdotransferase MoeA compare
MMP_RS00290 +0.6 2.5 hypothetical protein compare
MMP_RS01920 +0.6 3.3 glycosyltransferase family 2 protein compare
MMP_RS08265 +0.6 1.6 rubrerythrin compare
MMP_RS06440 +0.6 2.7 CBS domain-containing protein compare
MMP_RS01540 +0.5 1.3 DUF504 domain-containing protein compare
MMP_RS02045 +0.5 1.2 tRNA-Met compare
MMP_RS02470 +0.5 0.8 helix-turn-helix transcriptional regulator compare
MMP_RS06965 +0.5 2.2 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS01100 +0.5 1.0 ABC transporter ATP-binding protein compare
MMP_RS03065 +0.5 1.7 AzlC family ABC transporter permease compare
MMP_RS06535 +0.5 2.5 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS07550 +0.5 3.8 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS00520 +0.5 0.4 RNA polymerase Rpb4 family protein compare
MMP_RS02170 +0.5 2.1 CBS domain-containing protein compare
MMP_RS07100 +0.5 3.2 hypothetical protein compare
MMP_RS04205 +0.5 2.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS07880 +0.5 2.3 AAA family ATPase compare
MMP_RS08475 +0.5 2.7 ABC transporter permease compare
MMP_RS04610 +0.5 2.2 Dabb family protein compare
MMP_RS08260 +0.5 3.2 DUF99 family protein compare
MMP_RS00235 +0.5 3.1 HDIG domain-containing protein compare
MMP_RS09065 +0.5 3.9 hypothetical protein compare
MMP_RS05695 +0.5 3.7 phospholipase D-like domain-containing protein compare
MMP_RS08205 +0.5 3.4 stage II sporulation protein M compare
MMP_RS08285 +0.5 2.9 serine/threonine protein kinase compare
MMP_RS00395 +0.5 1.0 MGMT family protein compare
MMP_RS01630 +0.5 2.9 N-glycosylase/DNA lyase compare
MMP_RS00960 +0.5 2.6 iron export ABC transporter permease subunit FetB compare
MMP_RS08385 +0.5 2.1 ABC transporter substrate-binding protein compare
MMP_RS02675 +0.5 1.8 hypothetical protein compare
MMP_RS01925 +0.5 1.7 DUF1616 domain-containing protein compare
MMP_RS06550 +0.5 3.1 AMP-binding protein compare
MMP_RS08235 +0.4 1.9 hypothetical protein compare
MMP_RS02815 +0.4 1.5 hypothetical protein compare
MMP_RS08325 +0.4 2.8 hypothetical protein compare
MMP_RS06185 +0.4 2.2 thermonuclease family protein compare
MMP_RS03490 +0.4 1.1 DUF2115 domain-containing protein compare
MMP_RS00085 +0.4 2.6 DNA cytosine methyltransferase compare
MMP_RS05170 +0.4 2.3 lysine exporter LysO family protein compare
MMP_RS01635 +0.4 2.5 thiamine pyrophosphate-dependent enzyme compare
MMP_RS01430 +0.4 1.8 mechanosensitive ion channel family protein compare
MMP_RS05715 +0.4 1.8 hypothetical protein compare
MMP_RS07185 +0.4 2.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00540 +0.4 2.3 PLP-dependent aminotransferase family protein compare
MMP_RS02935 +0.4 1.4 A24 family peptidase compare
MMP_RS04265 +0.4 1.1 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00400 +0.4 2.3 tributyrin esterase compare
MMP_RS07840 +0.4 1.1 ribonuclease III compare
MMP_RS08700 +0.4 1.6 hypothetical protein compare
MMP_RS01865 +0.4 0.9 GPR1/FUN34/YaaH family transporter compare
MMP_RS08130 +0.4 2.6 IGHMBP2 family helicase compare
MMP_RS08280 +0.4 1.3 proteasome assembly chaperone family protein compare
MMP_RS08995 +0.4 0.7 hypothetical protein compare
MMP_RS08775 +0.4 1.5 methanogenesis marker 9 domain-containing protein compare
MMP_RS06735 +0.4 2.2 class I SAM-dependent rRNA methyltransferase compare
MMP_RS00295 +0.4 1.2 gamma carbonic anhydrase family protein compare
MMP_RS07905 +0.4 1.5 DUF3343 domain-containing protein compare
MMP_RS01950 +0.4 1.8 hypothetical protein compare
MMP_RS08080 +0.4 1.7 YchF/TatD family DNA exonuclease compare
MMP_RS07985 +0.4 2.7 nitroreductase family protein compare
MMP_RS06745 +0.4 1.6 DUF2119 domain-containing protein compare
MMP_RS02725 +0.4 1.4 molybdate ABC transporter permease subunit compare
MMP_RS02965 +0.4 1.5 carboxymuconolactone decarboxylase family protein compare
MMP_RS06585 +0.4 0.8 DMT family protein compare
MMP_RS01320 +0.4 2.0 hypothetical protein compare
MMP_RS00650 +0.4 1.7 ABC transporter ATP-binding protein compare
MMP_RS08085 +0.4 2.2 hypothetical protein compare
MMP_RS00545 +0.4 1.8 XRE family transcriptional regulator compare
MMP_RS06655 +0.4 1.8 glycoside hydrolase family 15 protein compare
MMP_RS00990 +0.4 0.9 hypothetical protein compare
MMP_RS01120 +0.4 1.9 permease compare
MMP_RS08630 +0.4 1.7 archaellar assembly protein FlaJ compare
MMP_RS01060 +0.4 2.7 calcium/sodium antiporter compare
MMP_RS07855 +0.4 2.1 class I SAM-dependent methyltransferase compare
MMP_RS02985 +0.4 0.8 hypothetical protein compare
MMP_RS08625 +0.4 2.2 type II/IV secretion system ATPase subunit compare
MMP_RS00385 +0.4 2.0 P-II family nitrogen regulator compare
MMP_RS08755 +0.4 2.6 sodium:solute symporter family protein compare
MMP_RS07650 +0.4 2.5 TldD/PmbA family protein compare
MMP_RS08620 +0.3 1.3 flagellar accessory protein FlaH compare
MMP_RS00640 +0.3 2.2 ABC transporter substrate-binding protein compare
MMP_RS08940 +0.3 0.6 MetS family NSS transporter small subunit compare
MMP_RS05825 +0.3 1.4 peptidyl-prolyl cis-trans isomerase compare
MMP_RS08890 +0.3 2.0 glycosyltransferase family 4 protein compare
MMP_RS08990 +0.3 1.9 hypothetical protein compare
MMP_RS06500 +0.3 1.8 ATP-binding protein compare
MMP_RS08610 +0.3 2.1 flagellar protein F compare
MMP_RS06760 +0.3 1.2 hypothetical protein compare
MMP_RS07590 +0.3 2.2 hypothetical protein compare
MMP_RS01130 +0.3 1.4 flavoprotein compare
MMP_RS03150 +0.3 2.7 phosphoglycerate mutase compare
MMP_RS06990 +0.3 1.3 CatB-related O-acetyltransferase compare
MMP_RS03885 +0.3 1.8 tyrosine-type recombinase/integrase compare
MMP_RS06010 +0.3 2.5 heavy metal translocating P-type ATPase compare
MMP_RS08405 +0.3 2.5 MFS transporter compare
MMP_RS05235 +0.3 1.9 exodeoxyribonuclease III compare
MMP_RS02360 +0.3 2.2 hypothetical protein compare
MMP_RS03450 +0.3 0.9 glycine synthesis protein GlyXS (from data) compare
MMP_RS08490 +0.3 2.5 hypothetical protein compare
MMP_RS01850 +0.3 2.1 phosphate ABC transporter substrate-binding protein compare
MMP_RS04145 +0.3 0.8 hypothetical protein compare
MMP_RS01650 +0.3 0.4 sulfurtransferase TusA family protein compare
MMP_RS07595 +0.3 1.9 hypothetical protein compare
MMP_RS06720 +0.3 1.8 response regulator transcription factor compare
MMP_RS04280 +0.3 2.0 coenzyme F420-non-reducing hydrogenase subunit gamma compare
MMP_RS00625 +0.3 1.9 hypothetical protein compare
MMP_RS07770 +0.3 1.4 alanine racemase compare
MMP_RS01070 +0.3 2.3 hypothetical protein compare
MMP_RS07155 +0.3 1.6 MFS transporter compare
MMP_RS04740 +0.3 1.3 DUF473 domain-containing protein compare
MMP_RS08485 +0.3 1.8 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS01155 +0.3 1.8 XRE family transcriptional regulator compare
MMP_RS07800 +0.3 1.5 ATP-binding cassette domain-containing protein compare
MMP_RS09050 +0.3 1.1 CAP domain-containing protein compare
MMP_RS06520 +0.3 1.4 DUF1786 domain-containing protein compare
MMP_RS08390 +0.3 1.1 DUF5400 domain-containing protein compare
MMP_RS02915 +0.3 1.2 amino acid ABC transporter permease compare
MMP_RS05720 +0.3 0.6 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS03575 +0.3 2.1 ECF transporter S component compare
MMP_RS00285 +0.3 1.7 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS08075 +0.3 1.4 DUF749 domain-containing protein compare
MMP_RS08245 +0.3 1.5 DUF4013 domain-containing protein compare
MMP_RS07680 +0.3 1.6 DUF366 family protein compare
MMP_RS09060 +0.3 2.0 hypothetical protein compare
MMP_RS07095 +0.3 0.9 PspC domain-containing protein compare
MMP_RS03355 +0.3 1.6 beta-propeller domain-containing protein compare
MMP_RS07715 +0.3 1.9 YfcE family phosphodiesterase compare
MMP_RS01620 +0.3 1.3 hypothetical protein compare
MMP_RS02785 +0.3 1.2 MarR family transcriptional regulator compare
MMP_RS00855 +0.3 1.4 DUF367 family protein compare
MMP_RS03845 +0.3 1.6 DNA adenine methylase compare
MMP_RS08070 +0.3 0.8 DUF2096 domain-containing protein compare
MMP_RS02770 +0.3 1.6 hypothetical protein compare
MMP_RS05960 +0.3 2.0 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS06365 +0.3 0.6 hypothetical protein compare
MMP_RS04325 +0.3 1.3 MtaA/CmuA family methyltransferase compare
MMP_RS00945 +0.3 0.5 PadR family transcriptional regulator compare
MMP_RS07850 +0.3 0.5 prephenate dehydratase compare
MMP_RS07775 +0.3 1.2 alanine dehydrogenase compare
MMP_RS06910 +0.3 1.6 RlmF-related methyltransferase compare
MMP_RS00660 +0.3 1.9 alkaline phosphatase family protein compare
MMP_RS09030 +0.3 1.3 hypothetical protein compare
MMP_RS05085 +0.3 1.8 AAA family ATPase compare
MMP_RS00800 +0.3 1.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07835 +0.3 1.1 TldD/PmbA family protein compare
MMP_RS06875 +0.3 1.2 FAD-dependent oxidoreductase compare
MMP_RS06070 +0.3 1.6 iron ABC transporter substrate-binding protein compare
MMP_RS08410 +0.3 1.1 DUF169 domain-containing protein compare
MMP_RS06430 +0.3 1.4 6-carboxytetrahydropterin synthase QueD compare
MMP_RS06560 +0.3 1.6 hypothetical protein compare
MMP_RS06190 +0.3 1.8 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS08250 +0.3 1.5 pyruvate kinase compare
MMP_RS07895 +0.3 1.0 cytochrome c compare
MMP_RS05820 +0.2 1.5 RNA-binding transcriptional accessory protein compare
MMP_RS06665 +0.2 1.5 glycogen/starch synthase compare
MMP_RS04415 +0.2 1.4 peptide-methionine (S)-S-oxide reductase MsrA compare
MMP_RS04520 +0.2 0.7 nucleoside deaminase compare
MMP_RS03900 +0.2 1.7 minichromosome maintenance protein MCM compare
MMP_RS01450 +0.2 1.5 tRNA pseudouridine(38-40) synthase TruA compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source casamino acids in Methanococcus maripaludis S2

For nitrogen source casamino acids across organisms